BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00016277
         (2084 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   634   e-179
ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein...   632   e-179
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta...   630   e-178
ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]...   605   e-170
ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein...   603   e-170

>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  634 bits (1636), Expect = e-179
 Identities = 347/604 (57%), Positives = 416/604 (68%), Gaps = 40/604 (6%)
 Frame = +3

Query: 117  YSNRKPSGSQVPLKKRLDPADRDDDRSSQEGDEEYDREH----DSDNDSVGSDLYKDEDD 284
            Y++RKPSGSQVPLKKRLDP +RDDD  SQE  ++  R       SD  ++G DLYKDEDD
Sbjct: 54   YASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDCDGDSSDESNIGDDLYKDEDD 113

Query: 285  REKLSRLTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKTHTRSMRSK 449
            R KLS +TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ 
Sbjct: 114  RRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKVAVPRKQSPPMSSSR-MRAS 172

Query: 450  AERAG------ALDELV------------KXXXXXXXXXXXXXYSPVKRRSFTAATLXXX 575
            A  A       AL+EL             +             +SP KR+ FT+ +L   
Sbjct: 173  ARSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGSRHFSPPKRKPFTSTSLSSS 232

Query: 576  XXXXXXXXXXXXXXXXXXXXXXXE----KLASESKVPTFEDIKEITIRRSKLAKWFMEPF 743
                                   +    +  + S+ P+F+D+KEITIRRSKLAKWFMEPF
Sbjct: 233  SHSESESRSHSDDEGSTGDGGIVDSDDDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPF 292

Query: 744  FDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESS 923
            F+++IVGCFVRVGIG+S++G IYRLC+V+NVDA++PDRQYKL+NKTTYKYLNVVWGNESS
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 924  AARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKRDAIQKTGSFVYSAATVK 1103
            AARWQMAM+SDS PL EEF QWV+EV+RSGG MP++QDVL+K+ AIQK  +FVYSAATVK
Sbjct: 353  AARWQMAMVSDSAPLEEEFKQWVKEVDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1104 QMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIKARLQELEASRQVQEKDS 1283
            QMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERIK RL ELEASRQ ++KD+
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKYDEAEVERIKTRLLELEASRQAKQKDA 472

Query: 1284 KAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRRWTRSRNYY--------- 1436
            KA+KLAEMNRKNR ENFKNASE+K VNT L+AGEAGYDPFSRRWTRSRNYY         
Sbjct: 473  KALKLAEMNRKNRFENFKNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 1437 XXXXXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXXXXDTMAPVDQGTESNLL 1616
                                P+                       DT APVDQGTESN+L
Sbjct: 533  AGNNSVNGNVAGAGSNGTGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 1617 HNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDNDGRRHALTLTVSDYKRR 1796
            HNF+LPISL +LQKFGG QGA AG+MARKQ +EA  G +V +NDGRRHALTLTVSDYKRR
Sbjct: 593  HNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 1797 RGLL 1808
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_003542767.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Glycine
            max]
          Length = 656

 Score =  632 bits (1631), Expect = e-179
 Identities = 346/604 (57%), Positives = 418/604 (69%), Gaps = 40/604 (6%)
 Frame = +3

Query: 117  YSNRKPSGSQVPLKKRLDPADRDDDRSSQE-GDEEYDREHD---SDNDSVGSDLYKDEDD 284
            Y++RKPSGSQVPLKKRLDP +RDDD  SQE  D++   +HD   SD  ++G DLYKDEDD
Sbjct: 54   YASRKPSGSQVPLKKRLDPTERDDDLGSQEEADDDGRSDHDGDSSDESNIGDDLYKDEDD 113

Query: 285  REKLSRLTELEREMILEARATKRSDRDLTEKL--KKRKGQ---DRKGSPPKTHTRSMRSK 449
            R KLS +TEL+REMIL  RATK+ D++L  K+  K+ KG+    RK SPP + +R MR+ 
Sbjct: 114  RRKLSEMTELQREMILSDRATKKDDKNLLGKIASKREKGKAAAPRKQSPPMSSSR-MRAS 172

Query: 450  AERAG------ALDELV------------KXXXXXXXXXXXXXYSPVKRRSFTAATLXXX 575
            A  A       AL+EL             +             +SP KR++FT+ +L   
Sbjct: 173  ARSADRSAKNDALNELRAKRLKQQDPEAHRRLREASRNAGPRHFSPPKRKTFTSTSLSSS 232

Query: 576  XXXXXXXXXXXXXXXXXXXXXXXE----KLASESKVPTFEDIKEITIRRSKLAKWFMEPF 743
                                   +    +  + S+ P+F+DIKEITIRRSKLAKWFMEPF
Sbjct: 233  SHSESESRSHSDDEGSTGDGGIADSDDDRALAGSEGPSFQDIKEITIRRSKLAKWFMEPF 292

Query: 744  FDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATDPDRQYKLDNKTTYKYLNVVWGNESS 923
            F+++IVGCFVRVGIG+S++G IYRLC+V+NVDA++PDRQYKL+NKTTYKYLNVVWGNESS
Sbjct: 293  FEELIVGCFVRVGIGRSKTGPIYRLCMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESS 352

Query: 924  AARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKRDAIQKTGSFVYSAATVK 1103
            AARWQMAM+SDS P+ EEF QWV+EV+ SGG MP++QDVL+K+ AIQK  +FVYSAATVK
Sbjct: 353  AARWQMAMVSDSAPMEEEFKQWVKEVDCSGGRMPSKQDVLEKKQAIQKAITFVYSAATVK 412

Query: 1104 QMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIKARLQELEASRQVQEKDS 1283
            QMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERIK RLQELEASRQ ++KD+
Sbjct: 413  QMLQEKKSASTRPLNVAAEKDRLRRELEIAQSKHDEAEVERIKTRLQELEASRQAKQKDA 472

Query: 1284 KAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRRWTRSRNYY--------- 1436
            KA+KLAEMNRKNR ENFKNASELK VN  L+AGEAGYDPFSRRWTRSRNYY         
Sbjct: 473  KALKLAEMNRKNRFENFKNASELKPVNIGLKAGEAGYDPFSRRWTRSRNYYAAKPGEKAA 532

Query: 1437 XXXXXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXXXXDTMAPVDQGTESNLL 1616
                                P+                       DT APVDQGTESN+L
Sbjct: 533  AGNNIVNGNVAGAGSNATGAPVTAEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNML 592

Query: 1617 HNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDNDGRRHALTLTVSDYKRR 1796
            HNF+LPISL +LQK+GG  GA AG+MARKQ +E+  G +V +NDGRRHALTLTVSDYKRR
Sbjct: 593  HNFELPISLALLQKYGGAPGAQAGFMARKQRIESTVGFRVSENDGRRHALTLTVSDYKRR 652

Query: 1797 RGLL 1808
            RGLL
Sbjct: 653  RGLL 656


>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
            gi|223541691|gb|EEF43239.1| RNA polymerase-associated
            protein RTF1, putative [Ricinus communis]
          Length = 660

 Score =  630 bits (1624), Expect = e-178
 Identities = 348/607 (57%), Positives = 416/607 (68%), Gaps = 43/607 (7%)
 Frame = +3

Query: 117  YSNRKPSGSQVPLKKRLDPADRDDDRSSQ-EGDEE---YDREHDS-DNDSVGSDLYKDED 281
            YS+RKPSGSQVPLKKRLDP +RDDD+ SQ EGD +    DRE DS D   VG DLYK+ED
Sbjct: 54   YSSRKPSGSQVPLKKRLDPTERDDDQGSQDEGDYDDGNSDREGDSSDGSDVGEDLYKNED 113

Query: 282  DREKLSRLTELEREMILEARATKRSDRDLTEKLKKRKGQDR-----KGSPPKTHTRSMRS 446
            DR KL++++ELEREMIL  RA K+ D++LTE+++ ++  +R     K +PP   +R +R+
Sbjct: 114  DRRKLAQMSELEREMILSERADKKGDKNLTERIRSKRESERTTRSRKETPPLPSSRGVRT 173

Query: 447  KA---ERAGALDELV-----------------KXXXXXXXXXXXXXYSPVKRRSFTAATL 566
             A   +RA A D+ +                 K             +SP+KR+ FT+A+L
Sbjct: 174  SARSADRAAAKDDALNELKARRLKQQDPEAHRKLRDASRRGSGSRGFSPIKRKRFTSASL 233

Query: 567  XXXXXXXXXXXXXXXXXXXXXXXXXXEKLASE--SKVPTFEDIKEITIRRSKLAKWFMEP 740
                                           E  S+ PTF+DI+EITIRRSKLAKWFMEP
Sbjct: 234  SSSSSESESRSHSEDEGSTGDGGMADSDDDGEPGSQGPTFDDIREITIRRSKLAKWFMEP 293

Query: 741  FFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATDPDRQYKLDNKTTYKYLNVVWGNES 920
            +F+++IVGCFVRVGIG+S+SG IYRLC+VRNVDA DPDR YKL+NKTTYKYLNV+WGNES
Sbjct: 294  WFEELIVGCFVRVGIGRSKSGPIYRLCLVRNVDAADPDRPYKLENKTTYKYLNVIWGNES 353

Query: 921  SAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKRDAIQKTGSFVYSAATV 1100
            SAARWQMAMISDS P  +E+ QWVREVERSGG MPT+QD+L+K++AI+K+ +FVYSAATV
Sbjct: 354  SAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPTKQDILEKKEAIRKSNTFVYSAATV 413

Query: 1101 KQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIKARLQELEASRQVQEKD 1280
            KQMLQEKKSA+ RPLNVAAEK+RLRR LEVA+   DDAEVERI+AR+QELEASRQ Q KD
Sbjct: 414  KQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQDDAEVERIRARIQELEASRQTQGKD 473

Query: 1281 SKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRRWTRSRNYY-----XXX 1445
            +KAI+LAEMNRKNR ENF+NASELK VNTSL+AGEAGYDPFSRRWTRSRNYY        
Sbjct: 474  AKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPAGGD 533

Query: 1446 XXXXXXXXXXXXXXXXXPLPTAIXXXXXXXXXXXXXXXXXXXDTMAPVD------QGTES 1607
                                +A                    D    VD      QGTES
Sbjct: 534  AAAATNNEASGTVAVANKTESAAGVSAEAGMAATAAALEAAADAGKLVDTAAPVDQGTES 593

Query: 1608 NLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDNDGRRHALTLTVSDY 1787
            N LHNF+LPISLT LQKFGG QGA AG+MARKQ +EA  G +V +ND +RH LTLTVSDY
Sbjct: 594  NTLHNFELPISLTALQKFGGAQGAQAGFMARKQRIEATIGCRVSENDEKRHVLTLTVSDY 653

Query: 1788 KRRRGLL 1808
            KRRRGLL
Sbjct: 654  KRRRGLL 660


>ref|XP_002305685.1| PAF1 complex component [Populus trichocarpa]
            gi|222848649|gb|EEE86196.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 662

 Score =  605 bits (1560), Expect = e-170
 Identities = 328/608 (53%), Positives = 412/608 (67%), Gaps = 44/608 (7%)
 Frame = +3

Query: 117  YSNRKPSGSQVPLKKRLDPADRDDDRSSQ-EGDEE---YDREHDSDNDS-VGSDLYKDED 281
            Y+NRKPSGSQVPLKKRL+  +RD +  SQ EGD +    DRE  S ++S +G DLYKDED
Sbjct: 55   YANRKPSGSQVPLKKRLETNERDGEEGSQDEGDYDGGGSDREGGSSDESDIGDDLYKDED 114

Query: 282  DREKLSRLTELEREMILEARATKRSDRDLTEKLKKRKGQD-----RKGSPPKTHTRSMRS 446
            DR+KL++++EL+RE+IL  RA K+ D+ LTEK++ ++  D     RK +PP   +R +RS
Sbjct: 115  DRKKLAQMSELDRELILADRADKKGDKHLTEKIRLKRDNDKPTRSRKETPPLPSSRGVRS 174

Query: 447  KA---ERAGALDELV-----------------KXXXXXXXXXXXXXYSPVKRRSFTAATL 566
             A   +RA A D+ +                 K             +S VK+ +FT+A+L
Sbjct: 175  SARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDVSRGSAGSRGFSQVKKNNFTSASL 234

Query: 567  XXXXXXXXXXXXXXXXXXXXXXXXXX--EKLASESKVPTFEDIKEITIRRSKLAKWFMEP 740
                                        E +   SK PT+EDIKEITIRR+KLAKWFMEP
Sbjct: 235  SSSSSESGSRSHSEDEGSTGDGGMADSDEDVEPGSKGPTYEDIKEITIRRTKLAKWFMEP 294

Query: 741  FFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATDPDRQYKLDNKTTYKYLNVVWGNES 920
            +F+++I+GCFVRVGIG+S+SG +YRLC+VRNVDA +PD+ YKL+NK+TYKYLNV WG ++
Sbjct: 295  WFEELIIGCFVRVGIGRSKSGPVYRLCMVRNVDAAEPDKPYKLENKSTYKYLNVTWGADT 354

Query: 921  SAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKRDAIQKTGSFVYSAATV 1100
            SAARWQMAM+SDS P  EE+ QWVREVE  GG +P++QD+L+K++AI+K+ +FVYSAATV
Sbjct: 355  SAARWQMAMVSDSGPTEEEYKQWVREVECGGGRLPSKQDILEKKEAIRKSNTFVYSAATV 414

Query: 1101 KQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIKARLQELEASRQVQEKD 1280
            KQMLQEKKSA+ RPLNVAAEK+RLRR LE+A+   D+AEVERI AR++ELEASR  + KD
Sbjct: 415  KQMLQEKKSASSRPLNVAAEKDRLRRELEIAQSKHDEAEVERINARIEELEASRHAKVKD 474

Query: 1281 SKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRRWTRSRNYYXXXXXXXX 1460
            +KAI+LAEMNRKNRVENF+NASE+K VNT L+AGEAGYDPFSRRWTRSRNYY        
Sbjct: 475  AKAIRLAEMNRKNRVENFRNASEMKPVNTGLKAGEAGYDPFSRRWTRSRNYYVSKPAEAD 534

Query: 1461 XXXXXXXXXXXXPLPTA------------IXXXXXXXXXXXXXXXXXXXDTMAPVDQGTE 1604
                         +  A                                DT APVDQGTE
Sbjct: 535  DPVATKISEANETVAVAASNQVVAGVMSEAGVAATEAALEAAADAGKLVDTSAPVDQGTE 594

Query: 1605 SNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDNDGRRHALTLTVSD 1784
            SN +H+F+L ISL  LQ+FGGPQGA AG+MARKQ +EA  G +VP+NDGRRHALTLTV D
Sbjct: 595  SNTMHSFELEISLIALQEFGGPQGAQAGFMARKQRIEATVGCRVPENDGRRHALTLTVGD 654

Query: 1785 YKRRRGLL 1808
            YKRRRGLL
Sbjct: 655  YKRRRGLL 662


>ref|XP_004149150.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Cucumis
            sativus] gi|449517636|ref|XP_004165851.1| PREDICTED: RNA
            polymerase-associated protein RTF1 homolog [Cucumis
            sativus]
          Length = 660

 Score =  603 bits (1555), Expect = e-170
 Identities = 337/608 (55%), Positives = 411/608 (67%), Gaps = 44/608 (7%)
 Frame = +3

Query: 117  YSNRKPSGSQVPLKKRLDPADRDDDRSSQEGDEEYD----REHDSDNDS-VGSDLYKDED 281
            Y++RKPSGSQVPLKKRLDP +RDDD  SQE  E+ D    RE DS ++S VG DLYKD+D
Sbjct: 54   YASRKPSGSQVPLKKRLDPTERDDDGGSQEEGEDEDVGSEREGDSSDESDVGDDLYKDDD 113

Query: 282  DREKLSRLTELEREMILEARATKRSDRDLTEKLKKR--KGQD---RKGSPP--KTHTRSM 440
            DR KL+ ++EL+REMIL  RA+K++D+ L E L+ +  KG+    RK +PP   +  RS 
Sbjct: 114  DRRKLAGMSELQREMILSDRASKKNDKHLYESLRAKMDKGKSAPSRKETPPLPSSRIRSS 173

Query: 441  RSKAERAGALDELV-----------------KXXXXXXXXXXXXXYSPVKRRSFTAATLX 569
               A+RA A D+ +                 K             +SP KR+ FTA +L 
Sbjct: 174  ARSADRAAAKDDALNELRAKRLKQQDPEAHRKLRDASRGNANSRRFSPTKRKPFTAPSLS 233

Query: 570  XXXXXXXXXXXXXXXXXXXXXXXXX----EKLASESKVPTFEDIKEITIRRSKLAKWFME 737
                                         E+    S  PTFEDIKE+TIRRSKLAKW ME
Sbjct: 234  SSSQSESESRFQSDDEGSTGDGGMIDSDDERSIPGSDGPTFEDIKEVTIRRSKLAKWLME 293

Query: 738  PFFDDMIVGCFVRVGIGKSRSGSIYRLCVVRNVDATDPDRQYKLDNKTTYKYLNVVWGNE 917
            PFF+++IVGCFVRVGIG+SRSG IYRLC+VRNVDAT+PDRQYKL+NK T+KYLNV+WGNE
Sbjct: 294  PFFEELIVGCFVRVGIGRSRSGPIYRLCLVRNVDATEPDRQYKLENKITHKYLNVIWGNE 353

Query: 918  SSAARWQMAMISDSPPLREEFDQWVREVERSGGHMPTRQDVLDKRDAIQKTGSFVYSAAT 1097
            +SAARWQMAM+SDS PL +E+ QWV+EVER+GG M ++QD+L+K++AIQK  +FVYSAAT
Sbjct: 354  ASAARWQMAMVSDSAPLEDEYKQWVKEVERTGGRMLSKQDILEKKEAIQKVNNFVYSAAT 413

Query: 1098 VKQMLQEKKSATWRPLNVAAEKERLRRALEVAKENDDDAEVERIKARLQELEASRQVQEK 1277
            VKQMLQ+KKSA+ RPLN+AAEK+RLRR ++VA   +D+AEVERIK RLQ+LEASR++Q K
Sbjct: 414  VKQMLQDKKSASARPLNIAAEKDRLRREMDVAVSKNDEAEVERIKTRLQQLEASRRLQMK 473

Query: 1278 DSKAIKLAEMNRKNRVENFKNASELKRVNTSLQAGEAGYDPFSRRWTRSRN-YYXXXXXX 1454
            D+KAI+LAEMNRKNRVENFKNASEL+ +   L+AGEAGYDPFSRRWTRSRN Y       
Sbjct: 474  DAKAIRLAEMNRKNRVENFKNASELRPLK-DLKAGEAGYDPFSRRWTRSRNYYVSNAGEA 532

Query: 1455 XXXXXXXXXXXXXXPL----------PTAIXXXXXXXXXXXXXXXXXXXDTMAPVDQGTE 1604
                          P            +                     DT APVD GTE
Sbjct: 533  NGAAEAAGNSDNVTPALENTRTEAGGTSDAGMAATAAALEAAAGAGKLVDTNAPVDGGTE 592

Query: 1605 SNLLHNFDLPISLTVLQKFGGPQGAHAGYMARKQMVEAIYGVKVPDNDGRRHALTLTVSD 1784
            SN LHNF+LPISL +LQKFGG  GA AG++ARKQ +EA  G +VP+NDGRRHALTLTVSD
Sbjct: 593  SNSLHNFELPISLAMLQKFGGALGAQAGFLARKQRIEATVGRQVPENDGRRHALTLTVSD 652

Query: 1785 YKRRRGLL 1808
            YKRRRGLL
Sbjct: 653  YKRRRGLL 660