BLASTX nr result
ID: Scutellaria22_contig00015445
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria22_contig00015445
(3080 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-lik... 1210 0.0
emb|CBI29964.3| unnamed protein product [Vitis vinifera] 1208 0.0
ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-lik... 1117 0.0
ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp.... 1068 0.0
ref|NP_187802.2| Cleavage and polyadenylation specificity factor... 1059 0.0
>ref|XP_002276675.1| PREDICTED: pre-mRNA-splicing factor rse1-like [Vitis vinifera]
Length = 1387
Score = 1210 bits (3130), Expect = 0.0
Identities = 631/907 (69%), Positives = 720/907 (79%), Gaps = 29/907 (3%)
Frame = -2
Query: 3079 SGISVEKLLKTAPIYQGVTGTWTVKMRVSDIYHSFLVLSFVEETRVLSVGVSFSDVTESV 2900
SGISVEKLL+TAPIYQG+TGTWTVKM+V D YHSFLVLSFVEETRVLSVG+SF+DVT+SV
Sbjct: 499 SGISVEKLLRTAPIYQGITGTWTVKMKVIDSYHSFLVLSFVEETRVLSVGLSFTDVTDSV 558
Query: 2899 GFQPDVCTLACGIVADGVLVQIHQSGVRLCLPAGTMPSEGVPLSSSICTSWFPGNMTISL 2720
GFQPDV TLACG+V DG+LVQIH++GV+LCLP EG+PL+S ICTSWFP N++ISL
Sbjct: 559 GFQPDVSTLACGVVDDGLLVQIHKNGVKLCLPTTVAHPEGIPLASPICTSWFPENISISL 618
Query: 2719 GAVGHGMIVVATSSPCFLFILGVRASVTYHYEVYQMHCVKLHNELSCISIPQKHPDLHK- 2543
GAVG+ +IVVATSSPCFLFILGVR+ Y YE+Y+M V+L NE+SCISIP KH D
Sbjct: 619 GAVGYNLIVVATSSPCFLFILGVRSVSAYQYEIYEMQHVRLQNEVSCISIPHKHFDKKPS 678
Query: 2542 -VLMDYAVNNPATPYPSGDRFDNLFVIGTHKPSVEVVCYAHDRGLQVLATGIISLTNTMG 2366
L + N+ A G +FVIGTHKPSVE++ + D GL++LA+G ISLTNT+G
Sbjct: 679 TFLSNLVDNSSAAALLIGVNIGRIFVIGTHKPSVEILSFLPDEGLRILASGAISLTNTLG 738
Query: 2365 TSISGCVPEDVRLVLVDHPYVLSGLRNGMLLRFEWPSASTLSPTGPPTQQTVVGSSSVNF 2186
T++SGCVP+D RLVLVD YVLSGLRNGMLLRFE P+AS + + + V S SVN
Sbjct: 739 TAVSGCVPQDARLVLVDRFYVLSGLRNGMLLRFELPAASMVFSSELSSHSPSVSSCSVND 798
Query: 2185 HDLSNTASPNNKALPMFMSGTSGKTEGELSVNLQLIAVRRIGITPVFLVSLSDSLDADMI 2006
D + + + N+ VNLQLIA+RRIGITPVFLV LSDSL+AD+I
Sbjct: 799 ADTNLSKNINSP------------------VNLQLIAIRRIGITPVFLVPLSDSLEADII 840
Query: 2005 ALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGILFVAENSLHLVEMVPSKRL 1826
ALSDRPWLLQ+ARHSLSYTSISFQPSTHVTPVCS ECP GILFVAENSLHLVEMV SKRL
Sbjct: 841 ALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMECPMGILFVAENSLHLVEMVHSKRL 900
Query: 1825 NVQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCVDPLSGSVLTSFKFDSGET 1646
NVQKF+LGGTPRKVLYH+ESRLLLVMRTEL D+ SSD+CCVDPLSGSVL+SFK + GET
Sbjct: 901 NVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDICCVDPLSGSVLSSFKLELGET 960
Query: 1645 GKCMEFVKVGNENVLVIGTSLCAGPAIMPSGEAESTKGRLVVLCLEHMQNSDTGSMT--- 1475
GK ME V+V NE VLVIGTSL +GPA+MPSGEAESTKGRL+VLCLEHMQNSD+GSMT
Sbjct: 961 GKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRLIVLCLEHMQNSDSGSMTFCS 1020
Query: 1474 ------QRNSP---IGSYAAEQXXXXXXXXXXXXXXXDGVKLEETEAWHLRLAYSTIWPG 1322
QR SP I YAAEQ DGV+LEE+EAW LRLAY+ WPG
Sbjct: 1021 KAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGVRLEESEAWQLRLAYTATWPG 1080
Query: 1321 MVIAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHFTRIAVGD 1142
MV+A+CPYLDRYFLASAGNSFYVCGFPNDN QRVRR AVGRTRF IM+LTAHFTRIAVGD
Sbjct: 1081 MVLAICPYLDRYFLASAGNSFYVCGFPNDNPQRVRRFAVGRTRFMIMSLTAHFTRIAVGD 1140
Query: 1141 CRDGILFYSYHEDSRKLEQIYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLSCANHLE- 965
CRDG++FYSYHEDSRKLEQ+YCDP QRLVADC+LMDVDTA VSDRKGS+ VLSC+NHLE
Sbjct: 1141 CRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCILMDVDTAVVSDRKGSIAVLSCSNHLEE 1200
Query: 964 ------------DNASPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDMLKDCEAGANN 821
DNASPE NLTL+CSYYMGEIAMS++KGSFSYKLPADD+LK C+
Sbjct: 1201 LHGFKFLIISCPDNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLPADDVLKGCDGSNTI 1260
Query: 820 INSSRNCIMASTLLGSIIIFIPITREEYELLEDVQARLVVDPLTAPILGNDHKEFRSRES 641
I+ S N IMA TLLGSII+ IPI+REE+ELLE VQARL V LTAPILGNDH EFRSRE+
Sbjct: 1261 IDFSENSIMAGTLLGSIIMLIPISREEHELLEAVQARLAVHQLTAPILGNDHNEFRSREN 1320
Query: 640 RAGTPKMLDGDILAQFLELTSMQQEDVLALPLGTPNPINRIQKPSM--PVMVNQVVRLLE 467
AG K+LDGD+LAQFLELTSMQQE VLALPLG+ + K ++ P+ VN+VV+LLE
Sbjct: 1321 SAGVSKILDGDMLAQFLELTSMQQEAVLALPLGSLETVTSSSKQTLLSPISVNRVVQLLE 1380
Query: 466 RVHYALN 446
RVHYALN
Sbjct: 1381 RVHYALN 1387
>emb|CBI29964.3| unnamed protein product [Vitis vinifera]
Length = 1363
Score = 1208 bits (3125), Expect = 0.0
Identities = 632/898 (70%), Positives = 718/898 (79%), Gaps = 20/898 (2%)
Frame = -2
Query: 3079 SGISVEKLLKTAPIYQGVTGTWTVKMRVSDIYHSFLVLSFVEETRVLSVGVSFSDVTESV 2900
SGISVEKLL+TAPIYQG+TGTWTVKM+V D YHSFLVLSFVEETRVLSVG+SF+DVT+SV
Sbjct: 499 SGISVEKLLRTAPIYQGITGTWTVKMKVIDSYHSFLVLSFVEETRVLSVGLSFTDVTDSV 558
Query: 2899 GFQPDVCTLACGIVADGVLVQIHQSGVRLCLPAGTMPSEGVPLSSSICTSWFPGNMTISL 2720
GFQPDV TLACG+V DG+LVQIH++GV+LCLP EG+PL+S ICTSWFP N++ISL
Sbjct: 559 GFQPDVSTLACGVVDDGLLVQIHKNGVKLCLPTTVAHPEGIPLASPICTSWFPENISISL 618
Query: 2719 GAVGHGMIVVATSSPCFLFILGVRASVTYHYEVYQMHCVKLHNELSCISIPQKHPDLHK- 2543
GAVG+ +IVVATSSPCFLFILGVR+ Y YE+Y+M V+L NE+SCISIP KH D
Sbjct: 619 GAVGYNLIVVATSSPCFLFILGVRSVSAYQYEIYEMQHVRLQNEVSCISIPHKHFDKKPS 678
Query: 2542 -VLMDYAVNNPATPYPSGDRFDNLFVIGTHKPSVEVVCYAHDRGLQVLATGIISLTNTMG 2366
L + N+ A G +FVIGTHKPSVE++ + D GL++LA+G ISLTNT+G
Sbjct: 679 TFLSNLVDNSSAAALLIGVNIGRIFVIGTHKPSVEILSFLPDEGLRILASGAISLTNTLG 738
Query: 2365 TSISGCVPEDVRLVLVDHPYVLSGLRNGMLLRFEWPSASTLSPTGPPTQQTVVGSSSVNF 2186
T++SGCVP+D RLVLVD YVLSGLRNGMLLRFE P+AS +V SS ++
Sbjct: 739 TAVSGCVPQDARLVLVDRFYVLSGLRNGMLLRFELPAAS------------MVFSSELSS 786
Query: 2185 HDLS-NTASPNNKALPMFMSGTSGKTEGELSVNLQLIAVRRIGITPVFLVSLSDSLDADM 2009
H S N SP VNLQLIA+RRIGITPVFLV LSDSL+AD+
Sbjct: 787 HSPSTNINSP---------------------VNLQLIAIRRIGITPVFLVPLSDSLEADI 825
Query: 2008 IALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGILFVAENSLHLVEMVPSKR 1829
IALSDRPWLLQ+ARHSLSYTSISFQPSTHVTPVCS ECP GILFVAENSLHLVEMV SKR
Sbjct: 826 IALSDRPWLLQSARHSLSYTSISFQPSTHVTPVCSMECPMGILFVAENSLHLVEMVHSKR 885
Query: 1828 LNVQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCVDPLSGSVLTSFKFDSGE 1649
LNVQKF+LGGTPRKVLYH+ESRLLLVMRTEL D+ SSD+CCVDPLSGSVL+SFK + GE
Sbjct: 886 LNVQKFYLGGTPRKVLYHSESRLLLVMRTELSQDTYSSDICCVDPLSGSVLSSFKLELGE 945
Query: 1648 TGKCMEFVKVGNENVLVIGTSLCAGPAIMPSGEAESTKGRLVVLCLEHMQNSDTGSMT-- 1475
TGK ME V+V NE VLVIGTSL +GPA+MPSGEAESTKGRL+VLCLEHMQNSD+GSMT
Sbjct: 946 TGKSMELVRVVNEQVLVIGTSLSSGPAMMPSGEAESTKGRLIVLCLEHMQNSDSGSMTFC 1005
Query: 1474 -------QRNSP---IGSYAAEQXXXXXXXXXXXXXXXDGVKLEETEAWHLRLAYSTIWP 1325
QR SP I YAAEQ DGV+LEE+EAW LRLAY+ WP
Sbjct: 1006 SKAGSSSQRTSPFREIVGYAAEQLSGSSLCSSPDDTSCDGVRLEESEAWQLRLAYTATWP 1065
Query: 1324 GMVIAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHFTRIAVG 1145
GMV+A+CPYLDRYFLASAGNSFYVCGFPNDN QRVRR AVGRTRF IM+LTAHFTRIAVG
Sbjct: 1066 GMVLAICPYLDRYFLASAGNSFYVCGFPNDNPQRVRRFAVGRTRFMIMSLTAHFTRIAVG 1125
Query: 1144 DCRDGILFYSYHEDSRKLEQIYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLSCANHLE 965
DCRDG++FYSYHEDSRKLEQ+YCDP QRLVADC+LMDVDTA VSDRKGS+ VLSC+NHLE
Sbjct: 1126 DCRDGVVFYSYHEDSRKLEQLYCDPEQRLVADCILMDVDTAVVSDRKGSIAVLSCSNHLE 1185
Query: 964 DNASPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDMLKDCEAGANNINSSRNCIMAST 785
DNASPE NLTL+CSYYMGEIAMS++KGSFSYKLPADD+LK C+ I+ S N IMA T
Sbjct: 1186 DNASPECNLTLNCSYYMGEIAMSIKKGSFSYKLPADDVLKGCDGSNTIIDFSENSIMAGT 1245
Query: 784 LLGSIIIFIPITREEYELLEDVQARLVVDPLTAPILGNDHKEFRSRES---RAGTPKMLD 614
LLGSII+ IPI+REE+ELLE VQARL V LTAPILGNDH EFRSRE+ +AG K+LD
Sbjct: 1246 LLGSIIMLIPISREEHELLEAVQARLAVHQLTAPILGNDHNEFRSRENSVRKAGVSKILD 1305
Query: 613 GDILAQFLELTSMQQEDVLALPLGTPNPINRIQKPSM--PVMVNQVVRLLERVHYALN 446
GD+LAQFLELTSMQQE VLALPLG+ + K ++ P+ VN+VV+LLERVHYALN
Sbjct: 1306 GDMLAQFLELTSMQQEAVLALPLGSLETVTSSSKQTLLSPISVNRVVQLLERVHYALN 1363
>ref|XP_004136549.1| PREDICTED: pre-mRNA-splicing factor RSE1-like [Cucumis sativus]
Length = 1376
Score = 1117 bits (2888), Expect = 0.0
Identities = 579/901 (64%), Positives = 694/901 (77%), Gaps = 23/901 (2%)
Frame = -2
Query: 3079 SGISVEKLLKTAPIYQGVTGTWTVKMRVSDIYHSFLVLSFVEETRVLSVGVSFSDVTESV 2900
+GISVE LL+T+PIYQG+T WT+KM+ SD YHS+LVLSFVEETRVLSVG+SF DVT+SV
Sbjct: 495 NGISVENLLRTSPIYQGITSIWTIKMKRSDTYHSYLVLSFVEETRVLSVGLSFIDVTDSV 554
Query: 2899 GFQPDVCTLACGIVADGVLVQIHQSGVRLCLPAGTMPSEGVPLSSSICTSWFPGNMTISL 2720
GFQ D CTLACG++ DG+++QIHQ+ VRLCLP SEG+ LSS CTSWFP N+ ISL
Sbjct: 555 GFQSDTCTLACGLLDDGLVIQIHQNAVRLCLPTKIAHSEGIELSSPACTSWFPDNIGISL 614
Query: 2719 GAVGHGMIVVATSSPCFLFILGVRASVTYHYEVYQMHCVKLHNELSCISIPQKH--PDLH 2546
GAVGH +IVV+TS+PCFLFILGVR Y YE+Y+ ++L ELSCISIP+KH
Sbjct: 615 GAVGHNVIVVSTSNPCFLFILGVRKVSGYDYEIYEKQYLRLQYELSCISIPEKHFAKKES 674
Query: 2545 KVLMDYAVNNPATPYPSGDRFDNLFVIGTHKPSVEVVCYAHDRGLQVLATGIISLTNTMG 2366
M+ N+ + + D + VIGTH+PSVE++ + GL VLA+G ISL N +G
Sbjct: 675 NFPMNSVENSIMSTLLNEVSCDTIIVIGTHRPSVEILSFVPSIGLTVLASGTISLMNILG 734
Query: 2365 TSISGCVPEDVRLVLVDHPYVLSGLRNGMLLRFEWPSASTLSPTGPPTQQTVV------- 2207
++SGC+P+DVRLVLVD YVL+GLRNGMLLRFEWP +T++ + P TVV
Sbjct: 735 NAVSGCIPQDVRLVLVDRFYVLTGLRNGMLLRFEWPHTATMNSSDMP--HTVVPFLLSCS 792
Query: 2206 GSSSVNFHDLSNTASPNNKALPMFMSGTSGKTEGELSVNLQLIAVRRIGITPVFLVSLSD 2027
S S FH+ + K E E+ LQLIA+RRIGITPVFLV L+D
Sbjct: 793 DSFSKEFHN----------------ADILEKHEDEIPSCLQLIAIRRIGITPVFLVPLTD 836
Query: 2026 SLDADMIALSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGILFVAENSLHLVE 1847
LD+D+IALSDRPWLL +ARHSLSYTSISFQPSTHVTPVCS +CP G+LFVAE+SLHLVE
Sbjct: 837 RLDSDIIALSDRPWLLHSARHSLSYTSISFQPSTHVTPVCSADCPSGLLFVAESSLHLVE 896
Query: 1846 MVPSKRLNVQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCVDPLSGSVLTSF 1667
MV +KRLNVQKFHLGGTPRKVLYH+ES+LLLVMRT+L ND+ SSD+CCVDPLSGS+L+S
Sbjct: 897 MVHTKRLNVQKFHLGGTPRKVLYHSESKLLLVMRTQLINDTSSSDICCVDPLSGSILSSH 956
Query: 1666 KFDSGETGKCMEFVKVGNENVLVIGTSLCAGPAIMPSGEAESTKGRLVVLCLEHMQNSDT 1487
K + GETGK ME V+ GNE VLV+GTSL +GPAIM SGEAESTKGRL+VLCLEH+QNSDT
Sbjct: 957 KLEIGETGKSMELVRNGNEQVLVVGTSLSSGPAIMASGEAESTKGRLIVLCLEHVQNSDT 1016
Query: 1486 GSMT---------QRNSP---IGSYAAEQXXXXXXXXXXXXXXXDGVKLEETEAWHLRLA 1343
GSMT + SP I YA EQ DG+KLEETEAW LR+
Sbjct: 1017 GSMTFCSKAGLSSLQASPFREIVGYATEQLSSSSLCSSPDDASSDGIKLEETEAWQLRVV 1076
Query: 1342 YSTIWPGMVIAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHF 1163
YST PGMV+A+CPYLDRYFLASAGN+FYVCGFPND+ QRV+R AVGRTRF I +LTAH
Sbjct: 1077 YSTSLPGMVLAICPYLDRYFLASAGNAFYVCGFPNDSFQRVKRFAVGRTRFMITSLTAHV 1136
Query: 1162 TRIAVGDCRDGILFYSYHEDSRKLEQIYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLS 983
RIAVGDCRDGILF+SY ED++KLEQIY DP QRLVADC L+DVDTA VSDRKGS+ +LS
Sbjct: 1137 NRIAVGDCRDGILFFSYQEDAKKLEQIYSDPSQRLVADCTLLDVDTAVVSDRKGSIAILS 1196
Query: 982 CANHLEDNASPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDMLKDCEAGANNINSSRN 803
C++ LEDNASPE NLTL+C+YYMGEIAM++RKGSFSYKLPADD+L+ C ++ +SS N
Sbjct: 1197 CSDRLEDNASPECNLTLNCAYYMGEIAMTLRKGSFSYKLPADDLLRGCAVPGSDFDSSHN 1256
Query: 802 CIMASTLLGSIIIFIPITREEYELLEDVQARLVVDPLTAPILGNDHKEFRSRESRAGTPK 623
I+ASTLLGSI+IF P++R+EYELLE VQA+L V PLT+PILGNDH E+RSRE+ G PK
Sbjct: 1257 TIIASTLLGSIVIFTPLSRDEYELLEAVQAKLAVHPLTSPILGNDHYEYRSRENPIGVPK 1316
Query: 622 MLDGDILAQFLELTSMQQEDVLALPLGTPNPINRIQKPSMP--VMVNQVVRLLERVHYAL 449
+LDGDIL QFLELTSMQQE VL+ +G+ + + K SMP + +NQVV+LLER+HYAL
Sbjct: 1317 ILDGDILTQFLELTSMQQELVLSSSVGSLSAVKPSSK-SMPASIPINQVVQLLERIHYAL 1375
Query: 448 N 446
N
Sbjct: 1376 N 1376
>ref|XP_002882757.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328597|gb|EFH59016.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1384
Score = 1068 bits (2761), Expect = 0.0
Identities = 553/907 (60%), Positives = 680/907 (74%), Gaps = 29/907 (3%)
Frame = -2
Query: 3079 SGISVEKLLKTAPIYQGVTGTWTVKMRVSDIYHSFLVLSFVEETRVLSVGVSFSDVTESV 2900
SGI+VEKLLKTAP+YQG+TGTWTVKM+++D+YHSFLVLSFVEETRVLSVG+SF DVT+SV
Sbjct: 502 SGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSV 561
Query: 2899 GFQPDVCTLACGIVADGVLVQIHQSGVRLCLPAGTMPSEGVPLSSSICTSWFPGNMTISL 2720
GFQ DVCTLACG+VADG+LVQIHQ +RLC+P S+G+P+SS +SWFP N++ISL
Sbjct: 562 GFQSDVCTLACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPDNVSISL 621
Query: 2719 GAVGHGMIVVATSSPCFLFILGVRASVTYHYEVYQMHCVKLHNELSCISIPQKHPDLHKV 2540
GAVG +IVV+TS+PCFL ILGV++ + E+Y++ V L E+SCIS+PQKH +
Sbjct: 622 GAVGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRS 681
Query: 2539 LMDYAVNNPATPYPSGDRFDNLFVIGTHKPSVEVVCYAHDR-GLQVLATGIISLTNTMGT 2363
N+ PSG F+IGTHKPSVEV+ ++ D G++VLA+G++SLTNTMG
Sbjct: 682 CASSPDNSCKAAIPSGMEQGYSFLIGTHKPSVEVLSFSEDGVGVRVLASGLVSLTNTMGA 741
Query: 2362 SISGCVPEDVRLVLVDHPYVLSGLRNGMLLRFEWPSASTLSPTGPPTQQTVVGSSSVNFH 2183
ISGC+P+DVRLVLVD YVLSGLRNGMLLRFEWP S +S +N
Sbjct: 742 VISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWPLFSN--------------ASGLNCP 787
Query: 2182 DLSNTASPNNKALPMFMSGTSGKTEGELSVNLQLIAVRRIGITPVFLVSLSDSLDADMIA 2003
D + M GK + L +NL LIA RRIGITPVFLV SDSLD+D+IA
Sbjct: 788 DYFSYCKEE-------MDIVVGKKDN-LPINLLLIATRRIGITPVFLVPFSDSLDSDIIA 839
Query: 2002 LSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGILFVAENSLHLVEMVPSKRLN 1823
LSDRPWLLQTAR SLSYTSISFQPSTH TPVCS+ECP+GILFV+EN LHLVEMV SKR N
Sbjct: 840 LSDRPWLLQTARQSLSYTSISFQPSTHATPVCSSECPQGILFVSENCLHLVEMVHSKRRN 899
Query: 1822 VQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCVDPLSGSVLTSFKFDSGETG 1643
QKFHLGGTPRKV+YH+ES+LL+VMRT+L D+C+SD+CCVDPLSGSVL+S+K GETG
Sbjct: 900 AQKFHLGGTPRKVIYHSESKLLIVMRTDL-YDTCTSDICCVDPLSGSVLSSYKLKPGETG 958
Query: 1642 KCMEFVKVGNENVLVIGTSLCAGPAIMPSGEAESTKGRLVVLCLEHMQNSDTGSMT---- 1475
K ME V+VGNE+VLV+GTSL +GPAI+PSGEAESTKGRL++LCLEH QNSD+GSMT
Sbjct: 959 KSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRLIILCLEHTQNSDSGSMTICSK 1018
Query: 1474 -----QRNSP---IGSYAAEQXXXXXXXXXXXXXXXDGVKLEETEAWHLRLAYSTIWPGM 1319
QR SP + Y EQ DG+K +E E W LRLA +T WPGM
Sbjct: 1019 AGSSSQRTSPFRDVVGYTTEQLSSSSHCSSPDDNSYDGIKFDEAETWQLRLASATTWPGM 1078
Query: 1318 VIAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHFTRIAVGDC 1139
V+A+CPYLD YFLASAGN+FYVCGFPND+ +R++R AVGRTRF I +L +FTRI VGDC
Sbjct: 1079 VLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDC 1138
Query: 1138 RDGILFYSYHEDSRKLEQIYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLSCANHLE-- 965
RDG+LFYSYHE+S+KL QIYCDP QRLVADC LMD ++ VSDRKGS+ +LSC +H E
Sbjct: 1139 RDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCQDHSEFG 1198
Query: 964 ------------DNASPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDMLKDCEAGANN 821
+ +SPE NL L+C+YYMGEIAM+++KG YKLPADD+L+ + +
Sbjct: 1199 TKHLAFSPRDDPEYSSPESNLNLNCAYYMGEIAMAIKKGCNIYKLPADDVLRSYGL-SKS 1257
Query: 820 INSSRNCIMASTLLGSIIIFIPITREEYELLEDVQARLVVDPLTAPILGNDHKEFRSRES 641
I+++ + I+A TLLGSI +F PI+ EEYELLE VQA+L + PLTAP+LGNDH EFR RE+
Sbjct: 1258 IDTADDTIIAGTLLGSIFVFAPISSEEYELLEAVQAKLGIHPLTAPVLGNDHNEFRGREN 1317
Query: 640 RAGTPKMLDGDILAQFLELTSMQQEDVLALPLGTP--NPINRIQKPSMPVMVNQVVRLLE 467
+ K+LDGD+LAQFLELT+ QQE VL P +P + + Q+ S P+M++QVV+LLE
Sbjct: 1318 PSQATKILDGDMLAQFLELTNRQQESVLLTPQPSPSTSKASSKQRSSPPLMLHQVVQLLE 1377
Query: 466 RVHYALN 446
RVHYAL+
Sbjct: 1378 RVHYALH 1384
>ref|NP_187802.2| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein [Arabidopsis thaliana] gi|29824376|gb|AAP04148.1|
unknown protein [Arabidopsis thaliana]
gi|110739103|dbj|BAF01468.1| hypothetical protein
[Arabidopsis thaliana] gi|332641608|gb|AEE75129.1|
Cleavage and polyadenylation specificity factor (CPSF) A
subunit protein [Arabidopsis thaliana]
Length = 1379
Score = 1059 bits (2739), Expect = 0.0
Identities = 551/899 (61%), Positives = 674/899 (74%), Gaps = 21/899 (2%)
Frame = -2
Query: 3079 SGISVEKLLKTAPIYQGVTGTWTVKMRVSDIYHSFLVLSFVEETRVLSVGVSFSDVTESV 2900
SGI+VEKLLKTAP+YQG+TGTWTVKM+++D+YHSFLVLSFVEETRVLSVG+SF DVT+SV
Sbjct: 505 SGINVEKLLKTAPVYQGITGTWTVKMKLTDVYHSFLVLSFVEETRVLSVGLSFKDVTDSV 564
Query: 2899 GFQPDVCTLACGIVADGVLVQIHQSGVRLCLPAGTMPSEGVPLSSSICTSWFPGNMTISL 2720
GFQ DVCT ACG+VADG+LVQIHQ +RLC+P S+G+P+SS +SWFP N++ISL
Sbjct: 565 GFQSDVCTFACGLVADGLLVQIHQDAIRLCMPTMDAHSDGIPVSSPFFSSWFPENVSISL 624
Query: 2719 GAVGHGMIVVATSSPCFLFILGVRASVTYHYEVYQMHCVKLHNELSCISIPQKHPDLHKV 2540
GAVG +IVV+TS+PCFL ILGV++ + E+Y++ V L E+SCIS+PQKH +
Sbjct: 625 GAVGQNLIVVSTSNPCFLSILGVKSVSSQCCEIYEIQRVTLQYEVSCISVPQKHIGKKRS 684
Query: 2539 LMDYAVNNPATPYPSGDRFDNLFVIGTHKPSVEVVCYAHDR-GLQVLATGIISLTNTMGT 2363
N PS F+IGTHKPSVEV+ + D G++VLA+G++SLTNTMGT
Sbjct: 685 RDSSPDNFCKAAIPSAMEQGYTFLIGTHKPSVEVLSFTEDGVGVRVLASGLVSLTNTMGT 744
Query: 2362 SISGCVPEDVRLVLVDHPYVLSGLRNGMLLRFEWPSASTLSPTGPPTQQTVVGSSSVNFH 2183
ISGC+P+DVRLVLVD YVLSGLRNGMLLRFEW S SS +N
Sbjct: 745 VISGCIPQDVRLVLVDQLYVLSGLRNGMLLRFEWAPFS--------------NSSGLNCP 790
Query: 2182 DLSNTASPNNKALPMFMSGTSGKTEGELSVNLQLIAVRRIGITPVFLVSLSDSLDADMIA 2003
D + M GK + L VNL LIA RRIGITPVFLV SDSLD+D+IA
Sbjct: 791 DYFSHCKEE-------MDTVVGKKD-NLPVNLLLIATRRIGITPVFLVPFSDSLDSDIIA 842
Query: 2002 LSDRPWLLQTARHSLSYTSISFQPSTHVTPVCSTECPRGILFVAENSLHLVEMVPSKRLN 1823
LSDRPWLLQTAR SLSYTSISFQPSTH TPVCS ECP+GILFV+EN LHLVEMV SKR N
Sbjct: 843 LSDRPWLLQTARQSLSYTSISFQPSTHATPVCSFECPQGILFVSENCLHLVEMVHSKRRN 902
Query: 1822 VQKFHLGGTPRKVLYHNESRLLLVMRTELDNDSCSSDVCCVDPLSGSVLTSFKFDSGETG 1643
QKF LGGTPRKV+YH+ES+LL+VMRT+L D+C+SD+CCVDPLSGSVL+S+K GETG
Sbjct: 903 AQKFQLGGTPRKVIYHSESKLLIVMRTDL-YDTCTSDICCVDPLSGSVLSSYKLKPGETG 961
Query: 1642 KCMEFVKVGNENVLVIGTSLCAGPAIMPSGEAESTKGRLVVLCLEHMQNSDTGSMT---- 1475
K ME V+VGNE+VLV+GTSL +GPAI+PSGEAESTKGR+++LCLEH QNSD+GSMT
Sbjct: 962 KSMELVRVGNEHVLVVGTSLSSGPAILPSGEAESTKGRVIILCLEHTQNSDSGSMTICSK 1021
Query: 1474 -----QRNSP---IGSYAAEQXXXXXXXXXXXXXXXDGVKLEETEAWHLRLAYSTIWPGM 1319
QR SP + Y E DG+KL+E E W LRLA ST WPGM
Sbjct: 1022 ACSSSQRTSPFHDVVGYTTENLSSSSLCSSPDDYSYDGIKLDEAETWQLRLASSTTWPGM 1081
Query: 1318 VIAVCPYLDRYFLASAGNSFYVCGFPNDNSQRVRRLAVGRTRFTIMTLTAHFTRIAVGDC 1139
V+A+CPYLD YFLASAGN+FYVCGFPND+ +R++R AVGRTRF I +L +FTRI VGDC
Sbjct: 1082 VLAICPYLDHYFLASAGNAFYVCGFPNDSPERMKRFAVGRTRFMITSLRTYFTRIVVGDC 1141
Query: 1138 RDGILFYSYHEDSRKLEQIYCDPVQRLVADCVLMDVDTAFVSDRKGSVVVLSCANHLE-- 965
RDG+LFYSYHE+S+KL QIYCDP QRLVADC LMD ++ VSDRKGS+ +LSC +H +
Sbjct: 1142 RDGVLFYSYHEESKKLHQIYCDPAQRLVADCFLMDANSVAVSDRKGSIAILSCKDHSDFG 1201
Query: 964 ----DNASPERNLTLSCSYYMGEIAMSMRKGSFSYKLPADDMLKDCEAGANNINSSRNCI 797
+ +SPE NL L+C+YYMGEIAMS++KG YKLPADD+L+ + +I+++ + I
Sbjct: 1202 MKHLEYSSPESNLNLNCAYYMGEIAMSIKKGCNIYKLPADDVLRSYGL-SKSIDTADDTI 1260
Query: 796 MASTLLGSIIIFIPITREEYELLEDVQARLVVDPLTAPILGNDHKEFRSRESRAGTPKML 617
+A TLLGSI +F PI+ EEYELLE VQA+L + PLTAP+LGNDH EFR RE+ + K+L
Sbjct: 1261 IAGTLLGSIFVFAPISSEEYELLEGVQAKLGIHPLTAPVLGNDHNEFRGRENPSQARKIL 1320
Query: 616 DGDILAQFLELTSMQQEDVLALPLGTP--NPINRIQKPSMPVMVNQVVRLLERVHYALN 446
DGD+LAQFLELT+ QQE VL+ P +P + + Q+ P+M++QVV+LLERVHYAL+
Sbjct: 1321 DGDMLAQFLELTNRQQESVLSTPQPSPSTSKASSKQRSFPPLMLHQVVQLLERVHYALH 1379