BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00006079
         (1523 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [...   564   e-158
emb|CBI26421.3| unnamed protein product [Vitis vinifera]              562   e-158
dbj|BAA88921.1| sigma factor [Nicotiana tabacum]                      561   e-157
ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-lik...   561   e-157
dbj|BAA88922.1| sigma factor [Nicotiana tabacum]                      557   e-156

>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 508

 Score =  564 bits (1454), Expect = e-158
 Identities = 315/504 (62%), Positives = 362/504 (71%), Gaps = 25/504 (4%)
 Frame = +3

Query: 87   MATAAVFGLSAAKRLLLGSTFYYXXXXXXXXXXXXPLPPXXXXXXXXXXXXXXXXXY--- 257
            MATAAV GLSA KRLL  + +Y              L                   Y   
Sbjct: 1    MATAAVIGLSAGKRLLSSTFYYSDLTEKLSSANEHGLTHYQITSTKTLIVAKKSSNYGPS 60

Query: 258  ----NRRPQSIKALKQHVDTSNPLEPWV--------IHEEDSGEVYLVDAVLLLQKSMLE 401
                NR  QSIKALK+HVDT++              + EE S   Y V+A+LLLQKSMLE
Sbjct: 61   FPSSNRNTQSIKALKEHVDTASAPSTAATQFKTFNDMEEESSDLDYSVEALLLLQKSMLE 120

Query: 402  KQWKLSVIPKXXXXXXXXASK----VTSSGTSARRRRLDCKRRSMTMN------NRSKQW 551
            KQW LS             S+    VT SG SAR+RR++ +R++++ +      N  KQ 
Sbjct: 121  KQWNLSFERTDSSDSPSRKSQKKIPVTCSGVSARQRRINIRRKNLSQSKFTVQANVFKQL 180

Query: 552  KSVISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXXGCEPS 731
            KS +SP+LL N LKGYVKGVVSE+LL+H++VV LS+ IKAG              GC+PS
Sbjct: 181  KSAVSPELLQNRLKGYVKGVVSEELLSHAEVVRLSRIIKAGLSLEDHKSRLKERLGCDPS 240

Query: 732  DDQLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXX 911
            D+Q+A SL+I+R  LQSK I CSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD       
Sbjct: 241  DEQVATSLKISRAELQSKSIACSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLI 300

Query: 912  XXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARL 1091
                  EKFDSSKGF+ISTYVYWWIRQGVSRALVE+SRTLRLP HLHERL LIRNAK RL
Sbjct: 301  GLLRGIEKFDSSKGFRISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKIRL 360

Query: 1092 EERGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNR 1271
            EE+G+TPSIDRIAESLN+SQ+KVRNATEAVSKVFSLDREAFPSLNGLPGET HSYIADN 
Sbjct: 361  EEKGVTPSIDRIAESLNISQKKVRNATEAVSKVFSLDREAFPSLNGLPGETHHSYIADNC 420

Query: 1272 VENNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRER 1451
            +ENNPW+GVD+WALKDEV+KLIN TL+ERE++IIRLYYGLDNE LTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDDWALKDEVNKLINLTLQEREQEIIRLYYGLDNESLTWEDISKRIGLSRER 480

Query: 1452 VRQVGLVALEKLKHAARKRRLDAM 1523
            VRQVGLVALEKLKHAARK++L+AM
Sbjct: 481  VRQVGLVALEKLKHAARKKKLEAM 504


>emb|CBI26421.3| unnamed protein product [Vitis vinifera]
          Length = 555

 Score =  562 bits (1449), Expect = e-158
 Identities = 319/493 (64%), Positives = 360/493 (73%), Gaps = 11/493 (2%)
 Frame = +3

Query: 78   SMIMATAAVFGLSAAKRLLLGSTFY------YXXXXXXXXXXXXPLPPXXXXXXXXXXXX 239
            S +M TAAV GLSA  RLL  S  Y                   P PP            
Sbjct: 70   SHMMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSN 129

Query: 240  XXXXXYNRRPQSIKALKQHVDTSNP---LEPWVIHE--EDSGEVYLVDAVLLLQKSMLEK 404
                  NR  QS+KALK+HV++++     +P +     E   E YLV+A LLLQKSMLEK
Sbjct: 130  YTPSS-NRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEK 188

Query: 405  QWKLSVIPKXXXXXXXXASKVTSSGTSARRRRLDCKRRSMTMNNRSKQWKSVISPQLLHN 584
            QW LS   +          +VT SGTSAR+RR+  ++R M   ++S+    V +   + N
Sbjct: 189  QWNLSFKARQKRR------EVTCSGTSARQRRISGRKRVMNEKSKSR----VRAALGVEN 238

Query: 585  SLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXXGCEPSDDQLAASLRIT 764
             LKGYVKGVVSE+LLTH+QVVLLS KIKAG              G EP+D+Q+AASLR++
Sbjct: 239  RLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAASLRMS 298

Query: 765  RPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXXXXXXEKFDS 944
            R  LQSK+IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD             EKFDS
Sbjct: 299  RAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGIEKFDS 358

Query: 945  SKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEERGITPSIDR 1124
            SKGFKISTYVYWWIRQGVSRALVE+SRTLRLP+HLHERLSLIRNAK RLEE+GITPSIDR
Sbjct: 359  SKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGITPSIDR 418

Query: 1125 IAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVENNPWNGVDE 1304
            IAE LNMSQ+KVRNATEA+SKVFSLDREAFPSLNGLPGETLHSYIAD R+ENNPW+GVDE
Sbjct: 419  IAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPWHGVDE 478

Query: 1305 WALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGLVALEK 1484
            WALKDEV+KLIN TL ERERDIIRLYYGLDNECLTWEDIS+RIGLSRERVRQVGLVALEK
Sbjct: 479  WALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGLVALEK 538

Query: 1485 LKHAARKRRLDAM 1523
            LK+AARK R++AM
Sbjct: 539  LKNAARKGRMEAM 551


>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
          Length = 508

 Score =  561 bits (1446), Expect = e-157
 Identities = 310/504 (61%), Positives = 363/504 (72%), Gaps = 24/504 (4%)
 Frame = +3

Query: 84   IMATAAVFGLSAAKRLLLGSTFYYXXXXXXXXXXXXPLPPXXXXXXXXXXXXXXXXXYN- 260
            +M+TAAV GLSA KRLL  S +Y              LP                  Y+ 
Sbjct: 1    MMSTAAVIGLSAGKRLLSSSFYYSDLNEKLTCTSDHSLPCHHVPSIKNVITAKKSSDYSP 60

Query: 261  -----RRPQSIKALKQHVD-TSNPLE--PWV-----IHEEDSGEVYLVDAVLLLQKSMLE 401
                 R+ QS K+LK+HVD T++P +   W      +  E   E   V+ +LLLQKSMLE
Sbjct: 61   SCVSSRKSQSAKSLKEHVDITADPSDVPSWFEMYEQLQNESDDEDESVEVLLLLQKSMLE 120

Query: 402  KQWKLSV----IPKXXXXXXXXASKVTSSGTSARRRRLDCKRR------SMTMNNRSKQW 551
            KQW LS+                  +T SGTSARRRR+D ++R      S T  + +K  
Sbjct: 121  KQWNLSLEQTLTASPQHEKKSKKMHITCSGTSARRRRMDSRQRVLDRHSSATPTSAAKPL 180

Query: 552  KSVISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXXGCEPS 731
            +S+I P+LL N LKGYVKGVVSE+LLTH++V+ LS+KI+ G              GCEPS
Sbjct: 181  RSIIGPELLQNRLKGYVKGVVSEELLTHAEVLQLSKKIQVGLYLEEQKSRLKERLGCEPS 240

Query: 732  DDQLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXX 911
            DDQLA SL+++R  LQS +IECSLARE+LAMSNVRLVMSIAQRYDN+GAEMAD       
Sbjct: 241  DDQLAVSLKMSRTDLQSTLIECSLARERLAMSNVRLVMSIAQRYDNVGAEMADLVQGGLI 300

Query: 912  XXXXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARL 1091
                  EKFD SKG+KISTYVYWWIRQGVSRALVE+SRTLRLPT+LHERLSLIRNAKARL
Sbjct: 301  GLLRGIEKFDPSKGYKISTYVYWWIRQGVSRALVENSRTLRLPTYLHERLSLIRNAKARL 360

Query: 1092 EERGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNR 1271
            EE+GITPS++ IA SLNMSQ+KVRNATEA SK++SLDREAFPSLNGLPGETLHSYIADN 
Sbjct: 361  EEKGITPSVNNIAASLNMSQKKVRNATEASSKMYSLDREAFPSLNGLPGETLHSYIADNH 420

Query: 1272 VENNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRER 1451
            +ENNPW+GVD WALKDEV+ LI++TLR+RER+IIRLYYGLDNECLTWEDIS+RIGLSRER
Sbjct: 421  LENNPWHGVDVWALKDEVNNLISSTLRDREREIIRLYYGLDNECLTWEDISKRIGLSRER 480

Query: 1452 VRQVGLVALEKLKHAARKRRLDAM 1523
            VRQVGLVALEKLKHAARKR+LDAM
Sbjct: 481  VRQVGLVALEKLKHAARKRQLDAM 504


>ref|XP_002264964.2| PREDICTED: RNA polymerase sigma-B factor-like isoform 2 [Vitis
            vinifera]
          Length = 497

 Score =  561 bits (1445), Expect = e-157
 Identities = 319/498 (64%), Positives = 359/498 (72%), Gaps = 18/498 (3%)
 Frame = +3

Query: 84   IMATAAVFGLSAAKRLLLGSTFY------YXXXXXXXXXXXXPLPPXXXXXXXXXXXXXX 245
            +M TAAV GLSA  RLL  S  Y                   P PP              
Sbjct: 1    MMGTAAVIGLSAGNRLLASSHHYSDVAEKLSSYVNDVGFPHHPSPPPKNLISAKKPSNYT 60

Query: 246  XXXYNRRPQSIKALKQHVDTSNP---LEPWVIHE--EDSGEVYLVDAVLLLQKSMLEKQW 410
                NR  QS+KALK+HV++++     +P +     E   E YLV+A LLLQKSMLEKQW
Sbjct: 61   PSS-NRSIQSMKALKEHVESASAPSTADPDLSSSSSEVEDEEYLVEAFLLLQKSMLEKQW 119

Query: 411  KLSVIPKXXXXXXXXASK-------VTSSGTSARRRRLDCKRRSMTMNNRSKQWKSVISP 569
             LS   +          K       VT SGTSAR+RR+  ++R M   ++S+    V + 
Sbjct: 120  NLSFEEEEEEEEEDMGKKARQKRREVTCSGTSARQRRISGRKRVMNEKSKSR----VRAA 175

Query: 570  QLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXXGCEPSDDQLAA 749
              + N LKGYVKGVVSE+LLTH+QVVLLS KIKAG              G EP+D+Q+AA
Sbjct: 176  LGVENRLKGYVKGVVSEELLTHAQVVLLSNKIKAGLLLEDHKSRLKERIGSEPTDEQVAA 235

Query: 750  SLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXXXXXX 929
            SLR++R  LQSK+IECSLAREKLAMSNVRLVMSIAQRYDNMGAEMAD             
Sbjct: 236  SLRMSRAELQSKLIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADLVQGGLIGLLRGI 295

Query: 930  EKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEERGIT 1109
            EKFDSSKGFKISTYVYWWIRQGVSRALVE+SRTLRLP+HLHERLSLIRNAK RLEE+GIT
Sbjct: 296  EKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPSHLHERLSLIRNAKIRLEEKGIT 355

Query: 1110 PSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVENNPW 1289
            PSIDRIAE LNMSQ+KVRNATEA+SKVFSLDREAFPSLNGLPGETLHSYIAD R+ENNPW
Sbjct: 356  PSIDRIAECLNMSQKKVRNATEAISKVFSLDREAFPSLNGLPGETLHSYIADVRLENNPW 415

Query: 1290 NGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVRQVGL 1469
            +GVDEWALKDEV+KLIN TL ERERDIIRLYYGLDNECLTWEDIS+RIGLSRERVRQVGL
Sbjct: 416  HGVDEWALKDEVNKLINTTLGERERDIIRLYYGLDNECLTWEDISKRIGLSRERVRQVGL 475

Query: 1470 VALEKLKHAARKRRLDAM 1523
            VALEKLK+AARK R++AM
Sbjct: 476  VALEKLKNAARKGRMEAM 493


>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
          Length = 502

 Score =  557 bits (1435), Expect = e-156
 Identities = 312/502 (62%), Positives = 355/502 (70%), Gaps = 27/502 (5%)
 Frame = +3

Query: 99   AVFGLSAAKRLLLGSTFYYXXXXXXXXXXXXPLP------PXXXXXXXXXXXXXXXXXYN 260
            A+ GLSA  R+L  S+FYY             LP      P                  N
Sbjct: 3    AIIGLSAGNRIL-SSSFYYSVLTEKFCVSDHALPCHHFPSPKNVINAKNSSNYSPSYVSN 61

Query: 261  RRPQSIKALKQHVDTSN----PLEPWV----------IHEEDSGEVYLVDAVLLLQKSML 398
            R+ QS+KALK+HVD ++      EPWV            EEDS EV     +LLLQKSML
Sbjct: 62   RKKQSVKALKEHVDIASNRDSDTEPWVQMFKQLQNGSCSEEDSVEV-----LLLLQKSML 116

Query: 399  EKQWKLSVIPKXXXXXXXXAS-KVTSSGTSARRRRLDCKRR------SMTMNNRSKQWKS 557
            EKQW LS               ++T SGTSARRRR+D ++R      S T ++ SK+ +S
Sbjct: 117  EKQWNLSAEKAMTNENNCKKKMQITCSGTSARRRRMDTRKRDLLPKNSATSDSSSKRLRS 176

Query: 558  VISPQLLHNSLKGYVKGVVSEQLLTHSQVVLLSQKIKAGXXXXXXXXXXXXXXGCEPSDD 737
            VI P+LL N  KGY+ GVV ++LLTH++VV LS+KIK G              GCEPSDD
Sbjct: 177  VIGPELLQNRSKGYINGVVGQELLTHTEVVQLSKKIKFGLYLEEQKSRLKERLGCEPSDD 236

Query: 738  QLAASLRITRPALQSKMIECSLAREKLAMSNVRLVMSIAQRYDNMGAEMADXXXXXXXXX 917
            QLA SL+I+R  L+S +IECSLAREKLAMSNVRLVMSIAQRYD  G EMAD         
Sbjct: 237  QLAISLKISRADLRSTLIECSLAREKLAMSNVRLVMSIAQRYDTNGTEMADLIQGGLIGL 296

Query: 918  XXXXEKFDSSKGFKISTYVYWWIRQGVSRALVESSRTLRLPTHLHERLSLIRNAKARLEE 1097
                EKFD S+GFKISTYVYWWIRQGVSRALVE+SRTLRLP HLHERLSLIRNAK +L+E
Sbjct: 297  LRGIEKFDHSRGFKISTYVYWWIRQGVSRALVENSRTLRLPIHLHERLSLIRNAKIKLKE 356

Query: 1098 RGITPSIDRIAESLNMSQRKVRNATEAVSKVFSLDREAFPSLNGLPGETLHSYIADNRVE 1277
             GITPSI++IAE LNMSQ+KVRNATEA SKVFSLDREAFPSLNGLPGETLHSYIADNR+E
Sbjct: 357  NGITPSIEKIAECLNMSQKKVRNATEASSKVFSLDREAFPSLNGLPGETLHSYIADNRLE 416

Query: 1278 NNPWNGVDEWALKDEVDKLINATLRERERDIIRLYYGLDNECLTWEDISRRIGLSRERVR 1457
            N PW+GVDEW LKDEV+ LI++TLRERER+I+RLYYGLDNECLTWEDISRRIGLSRERVR
Sbjct: 417  NIPWHGVDEWMLKDEVNNLISSTLREREREIVRLYYGLDNECLTWEDISRRIGLSRERVR 476

Query: 1458 QVGLVALEKLKHAARKRRLDAM 1523
            QVGLVALEKLKHAARKRRLDAM
Sbjct: 477  QVGLVALEKLKHAARKRRLDAM 498