BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00004324
         (2730 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum ly...   538   e-150
emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [So...   531   e-148
emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Ni...   530   e-147
emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Ni...   520   e-145
emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Ni...   520   e-145

>ref|NP_001234374.1| PSTVd RNA-binding protein Virp1d [Solanum lycopersicum]
            gi|10179602|gb|AAG13810.1|AF190891_1 PSTVd RNA-binding
            protein Virp1a [Solanum lycopersicum]
            gi|10179604|gb|AAG13811.1|AF190892_1 PSTVd RNA-binding
            protein Virp1b [Solanum lycopersicum]
            gi|10179606|gb|AAG13812.1|AF190893_1 PSTVd RNA-binding
            protein Virp1c [Solanum lycopersicum]
            gi|10179608|gb|AAG13813.1|AF190894_1 PSTVd RNA-binding
            protein Virp1d [Solanum lycopersicum]
            gi|13186132|emb|CAC33448.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186134|emb|CAC33449.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
            gi|13186136|emb|CAC33450.1| PSTVd RNA-biding protein,
            Virp1 [Solanum lycopersicum] gi|13186138|emb|CAC33451.1|
            PSTVd RNA-biding protein, Virp1 [Solanum lycopersicum]
          Length = 602

 Score =  538 bits (1385), Expect = e-150
 Identities = 325/586 (55%), Positives = 381/586 (65%), Gaps = 26/586 (4%)
 Frame = -1

Query: 2496 MASAVLASRNEPSWAH--------MGKXXXXXXXXXXXXXXXXXXXXKQFHHAAGNGVAG 2341
            MASAVLASRNE SWA         MGK                    KQFHH +     G
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTQLNPNHNPNPKKKQKQFHHTSN----G 56

Query: 2340 RYHNNGDSPAITQTASDDAYSFNQ----TSTTRNAVNYGGYLTFNVSSYSKPELYELRKR 2173
            R+ +  DSPA+TQTASDDAYSFNQ    ++T  + +N+GGYLTFNV SY+K E+ ELR R
Sbjct: 57   RHMD--DSPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKAEVNELRSR 114

Query: 2172 LTSELDQIRDLRNRIESSQFNIAENPRSQLKSKKFNGNKRLGAVVSSVP-KKLYDG---- 2008
            L +E++QIR+L++RIES Q +   NPRSQ KSKK +GNKR     SS   KKL +G    
Sbjct: 115  LMAEVEQIRNLKDRIESGQLSTT-NPRSQGKSKKQSGNKRPTPSGSSKDLKKLPNGVENR 173

Query: 2007 -YGNGGS----ELVHFEGLLKECSKIVVKLIKHKHGYIFRTPVDAVAMELHDYHTIVKRP 1843
             +GN G     + +  E ++KEC +I+ KL+KHK+G+IF  PVDA A+ LHDYH I+KRP
Sbjct: 174  NFGNPGGVDGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRP 233

Query: 1842 MDLGTVKSNLSKNLYSSPAEFAADVRLTFNNALLYNPKTDPVNAMAEQLLARFEELFKPI 1663
            MDLGTVKSNL+KN Y SP EFAADVRLTFNNALLYNPKTD VNA AEQLL RFE++F+P+
Sbjct: 234  MDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNAFAEQLLGRFEDMFRPL 293

Query: 1662 QEKMDDIHNQRRERDFHEFRVNDELPFREVEELQGSSWNNHSNQIIASPVRGKKSKPRTS 1483
            Q+KM+ +   RR  D+H            V+ELQGSSWN+     I +P R KK KP   
Sbjct: 294  QDKMNKLEGGRR--DYHP-----------VDELQGSSWNH-----IPTPERVKKPKP--- 332

Query: 1482 PVPIAQVLKNTERMQTPMRAHXXXXXXXXXXXXXXXXXXXPESLPPSPVRAPSMPAKEQK 1303
              P+  + K  ERMQ    A                         PSPVRAP+  AK Q 
Sbjct: 333  -TPVPNISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLST---PSPVRAPA--AKPQS 386

Query: 1302 IGRVAPL-KQPKPRAKDPNKREMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHLSQD 1126
              +V  + KQPKPRAKDPNKREM+M+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL+QD
Sbjct: 387  AAKVPTMGKQPKPRAKDPNKREMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQD 446

Query: 1125 GDEIELDIEALDTETLWELDRFVTNWRKMVSKTKRQALMNNNNPVS---GVSIPTTSIAE 955
            GDEIELDIEALDTETLWELDRFVTNW+KMVSKTKRQALMNN  P S     S  TTS+AE
Sbjct: 447  GDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMNNLGPPSASAAASAATTSVAE 506

Query: 954  ADMMTMSDKNDDDSGKKLKXXXXXXXXXXXDMPAESFPPVEIEKDE 817
            AD  T S+KND     K             D PA  FPPVEIEKDE
Sbjct: 507  ADGPTTSEKNDSFKKAKKGDVGEEDVEIEDDEPATHFPPVEIEKDE 552


>emb|CAD43283.1| bromodomain-containing RNA-binding protein 1 [Solanum tuberosum]
          Length = 602

 Score =  531 bits (1368), Expect = e-148
 Identities = 320/587 (54%), Positives = 381/587 (64%), Gaps = 27/587 (4%)
 Frame = -1

Query: 2496 MASAVLASRNEPSWAH--------MGKXXXXXXXXXXXXXXXXXXXXKQFHHAAGNGVAG 2341
            MASAVLASRNE SWA         MGK                    KQFHH +     G
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPFSHTQLNPNHNPNPKKKQKQFHHTSN----G 56

Query: 2340 RYHNNGDSPAITQTASDDAYSFNQ----TSTTRNAVNYGGYLTFNVSSYSKPELYELRKR 2173
            R+ +  +SPA+TQTASDDAYSFNQ    ++T  + +N+GGYLTFNV SY+K E+ ELR R
Sbjct: 57   RHID--ESPAVTQTASDDAYSFNQRPIESTTNVDGLNFGGYLTFNVVSYNKGEVNELRSR 114

Query: 2172 LTSELDQIRDLRNRIESSQFNIAENPRSQLKSKKFNGNKRLGAVVSSV-PKKLYDGY--- 2005
            L +E++QIR+L++RIES Q +   NPRSQ KSKK +GNKR     SS  PKKL +G    
Sbjct: 115  LLAEVEQIRNLKDRIESGQLSTT-NPRSQGKSKKLSGNKRPTPSGSSKDPKKLPNGVENR 173

Query: 2004 ------GNGGSELVHFEGLLKECSKIVVKLIKHKHGYIFRTPVDAVAMELHDYHTIVKRP 1843
                  G GG + +  E ++KEC +I+ KL+KHK+G+IF  PVDA A+ LHDYH I+KRP
Sbjct: 174  NFGNPVGGGGVKAIGTESMMKECRQILAKLMKHKNGWIFNIPVDAEALGLHDYHQIIKRP 233

Query: 1842 MDLGTVKSNLSKNLYSSPAEFAADVRLTFNNALLYNPKTDPVNAMAEQLLARFEELFKPI 1663
            +DLGTVKSNL+KN Y SP EFAADVRLTFNNALLYNPKTD VN  AEQLL RFE++F+P+
Sbjct: 234  IDLGTVKSNLAKNFYPSPFEFAADVRLTFNNALLYNPKTDQVNGFAEQLLGRFEDMFRPL 293

Query: 1662 QEKMDDIHNQRRERDFHEFRVNDELPFREVEELQGSSWNNHSNQIIASPVRGKKSKPRTS 1483
            Q+KM+ +   RR  D+H            V+ELQGSSWN+     I +P R KK  P+ +
Sbjct: 294  QDKMNKLEGGRR--DYHP-----------VDELQGSSWNH-----IPTPERVKK--PKAT 333

Query: 1482 PVPIAQVLKNTERMQTPMRAHXXXXXXXXXXXXXXXXXXXPESLPPSPVRAPSMPAKEQK 1303
            PVP   + K  ERMQ    A                         PSPVRAP  P+K + 
Sbjct: 334  PVP--HISKKQERMQNHSSASTPSLPVPPPNPPARQQSPLST---PSPVRAP--PSKPES 386

Query: 1302 IGRVAPL-KQPKPRAKDPNKREMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHLSQD 1126
              +V  + KQPKPRAKDPNKR M+M+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL+QD
Sbjct: 387  AAKVPAMGKQPKPRAKDPNKRVMNMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLAQD 446

Query: 1125 GDEIELDIEALDTETLWELDRFVTNWRKMVSKTKRQALMNNN----NPVSGVSIPTTSIA 958
            GDEIELDIEALDTETLWELDRFVTNW+KMVSKTKRQALM NN    +  +  S  TTS+A
Sbjct: 447  GDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALMINNLGPPSASAAASAATTSVA 506

Query: 957  EADMMTMSDKNDDDSGKKLKXXXXXXXXXXXDMPAESFPPVEIEKDE 817
            EAD  T S+KND     K             D PA  FPPVEIEKDE
Sbjct: 507  EADGPTTSEKNDSFKKPKKGDVGEEDVEIEDDEPATHFPPVEIEKDE 553


>emb|CAD43284.1| bromodomain-containing RNA-binding protein 1 [Nicotiana benthamiana]
          Length = 615

 Score =  530 bits (1364), Expect = e-147
 Identities = 320/595 (53%), Positives = 385/595 (64%), Gaps = 35/595 (5%)
 Frame = -1

Query: 2496 MASAVLASRNEPSWAH--------MGKXXXXXXXXXXXXXXXXXXXXKQFHHAAGNGVAG 2341
            MASAVLASRNE SWA         MGK                    KQFHHA+ NG   
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPKPKKKQKQFHHAS-NG--- 56

Query: 2340 RYHNNGDSPAITQTASDDAYSFNQ----TSTTRNAVNYGGYLTFNVSSYSKPELYELRKR 2173
                N +SPA+TQTASDDAYSFNQ    +ST  + +N GGY+T+NV+SY+K EL+ELR R
Sbjct: 57   --RQNDESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELRSR 114

Query: 2172 LTSELDQIRDLRNRIESSQFNIAENPRSQLKSKKFNGNKRLGAVVSSV-PKKLYDG---- 2008
            L +EL+QIR L++RIES Q + + NPRS  KSKK +GNKR     SS  PKKL +G    
Sbjct: 115  LVAELEQIRSLKDRIESGQLSTS-NPRSHGKSKKLSGNKRATPSGSSKDPKKLPNGVDNR 173

Query: 2007 -YGNGGSE----LVHFEGLLKECSKIVVKLIKHKHGYIFRTPVDAVAMELHDYHTIVKRP 1843
             +GN G      ++  E ++KEC +++ KL+KHK G+IF TPVDA A+ LHDYH I+KRP
Sbjct: 174  NFGNPGGVGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYHQIIKRP 233

Query: 1842 MDLGTVKSNLSKNLYSSPAEFAADVRLTFNNALLYNPKTDPVNAMAEQLLARFEELFKPI 1663
            MDLGTVKSNLS   Y +P EFAADVRLTFNNALLYNPKTD V+  AEQLLARFE++F+PI
Sbjct: 234  MDLGTVKSNLSNCFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRPI 293

Query: 1662 QEKMDDIHNQRRERDFHEFRVNDELPFREVEELQGSSWNNHSNQIIASPVRGKKSKPRTS 1483
            Q+K++ +      RDFH             +ELQG SWN+     I +P R KK KP  +
Sbjct: 294  QDKLNKLDGGSDRRDFHP-----------TDELQGISWNH-----IPTPERVKKPKPTPA 337

Query: 1482 PVPIAQVLKNTERMQTPMRAHXXXXXXXXXXXXXXXXXXXPESL--PPSPVRAPSMPAKE 1309
            P     + K  ERM   M+ H                    +SL   PSPVRAP  P  +
Sbjct: 338  P----HISKKQERM---MQNHSSALTLPVQQPPDNTPVVRQQSLLSTPSPVRAPPAPKPQ 390

Query: 1308 QKIG-RVAPL-KQPKPRAKDPNKREMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHL 1135
              +  +V P+ KQPKPRAKDPNKREMSM+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL
Sbjct: 391  SSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHL 450

Query: 1134 SQDGDEIELDIEALDTETLWELDRFVTNWRKMVSKTKRQALMNN-----NNPVSGVSIPT 970
            +QDGDEIELDIEALDTETLWELDRFVTNW+KMVSKTKRQAL+NN     +   +  +  T
Sbjct: 451  AQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATT 510

Query: 969  TSIAEADMMTMSDKNDDDSGKKLKXXXXXXXXXXXDM----PAESFPPVEIEKDE 817
            TS+AEAD  + S+KN  DS KK K           ++    PA  FPPVEI+KDE
Sbjct: 511  TSVAEADAPSTSEKN--DSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIDKDE 563


>emb|CAD43285.1| bromodomain-containing RNA-binding protein 2 [Nicotiana benthamiana]
          Length = 613

 Score =  520 bits (1339), Expect = e-145
 Identities = 316/593 (53%), Positives = 378/593 (63%), Gaps = 33/593 (5%)
 Frame = -1

Query: 2496 MASAVLASRNEPSWAH--------MGKXXXXXXXXXXXXXXXXXXXXKQFHHAAGNGVAG 2341
            MASAVLASRNE SWA         MGK                    KQFHHA+ NG   
Sbjct: 1    MASAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPNPKKKQKQFHHAS-NGC-- 57

Query: 2340 RYHNNGDSPAITQTASDDAYSFNQ----TSTTRNAVNYGGYLTFNVSSYSKPELYELRKR 2173
               +N + PA+TQTASDDAYSFNQ    +S   + +N GGY+T+NV+SYSK EL++LR R
Sbjct: 58   ---HNDELPAVTQTASDDAYSFNQRPIESSANVDGLNLGGYMTYNVASYSKTELHDLRSR 114

Query: 2172 LTSELDQIRDLRNRIESSQFNIAENPRSQLKSKKFNGNKRLGAVVSSV-PKKLYDGY--- 2005
            L +EL+QIR+L++RIES Q + + NPRS  KSKK +GNKR     SS  PKKL +G    
Sbjct: 115  LVAELEQIRNLKDRIESGQLSTS-NPRSHGKSKKLSGNKRPTPSGSSKDPKKLPNGVDNR 173

Query: 2004 ------GNGGSELVHFEGLLKECSKIVVKLIKHKHGYIFRTPVDAVAMELHDYHTIVKRP 1843
                  G G   ++  E ++KEC +++ KL+KHK G+IF TPVDA A+ LHDY  I+KRP
Sbjct: 174  NFGNPGGGGVKGIIGMENMMKECRQVLGKLMKHKSGWIFNTPVDAEALGLHDYRQIIKRP 233

Query: 1842 MDLGTVKSNLSKNLYSSPAEFAADVRLTFNNALLYNPKTDPVNAMAEQLLARFEELFKPI 1663
            MDLGTVKSNLS NLY +P EFAADVRLTFNNALLYNPKTD V+  AE LL RFE++F+P 
Sbjct: 234  MDLGTVKSNLSNNLYPTPFEFAADVRLTFNNALLYNPKTDQVHVFAELLLTRFEDMFRPF 293

Query: 1662 QEKMDDIHNQRRERDFHEFRVNDELPFREVEELQGSSWNNHSNQIIASPVRGKKSKPRTS 1483
            Q+K++ +      RDFH            ++ELQGSSWN+     I +P R KK KP  +
Sbjct: 294  QDKLNKLDGGSGRRDFHA-----------IDELQGSSWNH-----IPTPERVKKPKPTPA 337

Query: 1482 PVPIAQVLKNTERM-QTPMRAHXXXXXXXXXXXXXXXXXXXPESLPPSPVRAPSMPAKEQ 1306
            P     + K  ERM Q    A                         PSPVRAP     + 
Sbjct: 338  P----HISKKQERMMQNHSSASTPSLPVQQPPDNPPVVQQQSPLSTPSPVRAPPAAKPQS 393

Query: 1305 KIG-RVAPL-KQPKPRAKDPNKREMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHLS 1132
             +  +V P+ KQPKPRAKDPNKREMSM+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL+
Sbjct: 394  SVAAKVPPMEKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHLA 453

Query: 1131 QDGDEIELDIEALDTETLWELDRFVTNWRKMVSKTKRQALMNN-NNPVS---GVSIPTTS 964
            QDGDEIELDIEALDTETLWELDRFVTNW+KMVSKTKRQAL+NN   P S     S  TTS
Sbjct: 454  QDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATTS 513

Query: 963  IAEADMMTMSDKNDDDSGKKLKXXXXXXXXXXXDM----PAESFPPVEIEKDE 817
            +AEAD  + S+KN  DS KK K           ++    PA  FPPVEI+KDE
Sbjct: 514  VAEADGPSTSEKN--DSFKKPKKGGDAGDEDDVEIEDDEPATQFPPVEIDKDE 564


>emb|CAD43286.1| bromodomain-containing RNA-binding protein 1 [Nicotiana tabacum]
          Length = 617

 Score =  520 bits (1339), Expect = e-145
 Identities = 315/595 (52%), Positives = 379/595 (63%), Gaps = 35/595 (5%)
 Frame = -1

Query: 2496 MASAVLASRNEPSWAH--------MGKXXXXXXXXXXXXXXXXXXXXKQFHHAAGNGVAG 2341
            MA AVLASRNE SWA         MGK                    KQFHHA+     G
Sbjct: 1    MAFAVLASRNESSWAQSGGAGGGFMGKTPYSHTHLNPNSNPNPKKKQKQFHHASN----G 56

Query: 2340 RYHNNGDSPAITQTASDDAYSFNQ----TSTTRNAVNYGGYLTFNVSSYSKPELYELRKR 2173
            R+  N +SPA+TQTASDDAYSFNQ    +ST  + +N GGY+T+NV+SY+K EL+ELR R
Sbjct: 57   RH--NDESPAVTQTASDDAYSFNQRPIESSTNVDGLNLGGYMTYNVASYNKTELHELRSR 114

Query: 2172 LTSELDQIRDLRNRIESSQFNIAENPRSQLKSKKFNGNKRLGAVVSSVP-KKLYDGY--- 2005
            L +EL+QIR+L++RIES Q + + NPRS  KSKK +GNKR     SS   KKL +G    
Sbjct: 115  LVAELEQIRNLKDRIESGQLSTS-NPRSHGKSKKLSGNKRPTPSGSSKDRKKLLNGVDNR 173

Query: 2004 -------GNGGSELVHFEGLLKECSKIVVKLIKHKHGYIFRTPVDAVAMELHDYHTIVKR 1846
                   G G   ++  E ++KEC +++ KL+KHK G+IF TPVDA AM LHDYH I+KR
Sbjct: 174  NFGNPGGGGGVKGIIGMENMMKECRQVLAKLMKHKSGWIFNTPVDAKAMGLHDYHQIIKR 233

Query: 1845 PMDLGTVKSNLSKNLYSSPAEFAADVRLTFNNALLYNPKTDPVNAMAEQLLARFEELFKP 1666
            PMDLGTVKSNL  N Y +P EFAADVRLTFNNALLYNPKTD V+  AEQLLARFE++F+P
Sbjct: 234  PMDLGTVKSNLINNFYPTPFEFAADVRLTFNNALLYNPKTDQVHGFAEQLLARFEDMFRP 293

Query: 1665 IQEKMDDIHNQRRERDFHEFRVNDELPFREVEELQGSSWNNHSNQIIASPVRGKKSKPRT 1486
            IQ+K++ +      RDF           R ++ELQGSSWN+     I +P R KK KP  
Sbjct: 294  IQDKLNKLDGGTGRRDF-----------RAIDELQGSSWNH-----IPTPERVKKPKPTP 337

Query: 1485 SPVPIAQVLKNTERM-QTPMRAHXXXXXXXXXXXXXXXXXXXPESLPPSPVRAPSMPAKE 1309
            +P     + K  ERM Q    A                         PSPVRAP     +
Sbjct: 338  AP----HISKKQERMMQNHSSASTPSLPVQQPPDNPPVVRQQSPLSTPSPVRAPPAAKPQ 393

Query: 1308 QKIG-RVAPL-KQPKPRAKDPNKREMSMDEKQKLGIGLQSLPQEKMPQLVQIIRKRNEHL 1135
              +  +V P+ KQPKPRAKDPNKREMSM+EK KLG+GLQSLPQEKMPQLVQIIRKRNEHL
Sbjct: 394  SSVAAKVPPMGKQPKPRAKDPNKREMSMEEKHKLGVGLQSLPQEKMPQLVQIIRKRNEHL 453

Query: 1134 SQDGDEIELDIEALDTETLWELDRFVTNWRKMVSKTKRQALMNN-----NNPVSGVSIPT 970
            +QDGDEIELDIEALDTETLWELDRFVTNW+KMVSKTKRQAL+NN     +   +  +  T
Sbjct: 454  AQDGDEIELDIEALDTETLWELDRFVTNWKKMVSKTKRQALINNLGQPPSASAAASAATT 513

Query: 969  TSIAEADMMTMSDKNDDDSGKKLKXXXXXXXXXXXDM----PAESFPPVEIEKDE 817
            TS+AEAD  + S+KN  DS KK K           ++    PA  FPPVEIE D+
Sbjct: 514  TSVAEADGPSTSEKN--DSFKKPKKGGDAGDEDDVEIEDDEPATHFPPVEIEIDK 566