BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00002721
         (3885 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...  1683   0.0  
emb|CBI21137.3| unnamed protein product [Vitis vinifera]             1654   0.0  
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...  1586   0.0  
gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum...  1584   0.0  
ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|2...  1572   0.0  

>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
            vinifera]
          Length = 1198

 Score = 1683 bits (4359), Expect = 0.0
 Identities = 839/1203 (69%), Positives = 977/1203 (81%), Gaps = 9/1203 (0%)
 Frame = -1

Query: 3762 SSISEKFSNGSTKMDFDDYVDFHSSDSEDELDCAMQGLDEGFLKAFCRKASTAFFDQYGL 3583
            SS+ EK SNG  +M+ DD  D   S   D+L+       + +LK FC+K + +FF++YGL
Sbjct: 14   SSMGEKLSNG-VQMEIDD--DLMGSIEIDDLN-------KEYLKTFCKKVAVSFFNEYGL 63

Query: 3582 ISHQINSYNDFVKYGLQEVFDSIGEIMIEPNYNPSKKGDGDWRRASLKFGKVTLDPPTFF 3403
            I HQINS+NDF+K G+Q VFDS GEI +EP Y+PSK+G+GDWR AS++FGKVTL+ P  +
Sbjct: 64   IQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVW 123

Query: 3402 TGEKFSAVEGAQEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVE-KF 3226
             GE        +E L   PRHARLQNMTY+S+++ + H QVYT+ + RSDK+KTG + K+
Sbjct: 124  AGES-----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKY 178

Query: 3225 VEKKIVSEYHDVVNFGRLPVMVKSNLCLMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQI 3046
            VEKK++ E +  +  GR+PVMVKS LC M  VE+ DCE+D GGYF+IKGAEKTFIAQEQI
Sbjct: 179  VEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQI 238

Query: 3045 CLKRLWVAKDPTWTVSYRPVSKRNRVYIKLVP-KLEQVLGGEKILSVYFFVTEIPLWILF 2869
            CLKRLWV+ +PTW V+YRP+ KR RVY+KL P K E   GGEK+L+VYF  TEIP+WILF
Sbjct: 239  CLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILF 298

Query: 2868 FALGVSNDREAVKLIDIDTEDSAIENILIASIYEADKKFEG----FRKGGNAIKHIKELM 2701
            FALG S+D+E V LID + +D+ I NIL+ASI+EAD++ E     FR+ GNAI  + +L+
Sbjct: 299  FALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLV 358

Query: 2700 QDCKFPPTESVEDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKX 2521
            + CKFPP ES+++CI  YLFP+     QKA FL YMVKCLL+AY GRRK DNRDD RNK 
Sbjct: 359  KSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 418

Query: 2520 XXXXXXXXXXXLKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTG 2347
                       L+VHI+HAERRMVKA+Q++L  D+D++ I  YLDASIITNGLSRAFSTG
Sbjct: 419  LELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTG 478

Query: 2346 AWVHPYKRMERTSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCF 2167
             W HP+KRMER SGVVATLRRTNPLQ  ADMRKTRQQV YTG+VGDARYPHPSHWGK+CF
Sbjct: 479  QWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 538

Query: 2166 LSTPDGENCGLVKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLD 1987
            LSTPDGENCGLVKNLA TGLVST VL+   L+ K  +CGME LVDD S    GK+KVFLD
Sbjct: 539  LSTPDGENCGLVKNLAITGLVSTEVLDP--LVDKLFDCGMEKLVDDTSTKLSGKNKVFLD 596

Query: 1986 GDWVGMCKDSSSFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNL 1807
            GDWVG+C+D  SFV +LR +RR  E+P Q+EIKRD+   EVRIF+DAGRILRPLLVV+NL
Sbjct: 597  GDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENL 656

Query: 1806 KKIKELKGD-FMFQSLLDNXXXXXXXXXXXEDCQTAWGIKYLFTAELENPPVKYTHCELD 1630
            KK+K  KGD F FQSLLD            EDC TAWGIKYL     ++PPVKYTHCELD
Sbjct: 657  KKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELD 715

Query: 1629 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPL 1450
             SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTN NIRVDT SHQLYYPQRPL
Sbjct: 716  MSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPL 775

Query: 1449 FRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGM 1270
            FRTM++DCLGK  YS  HKG++PRPE+FN Q AIVAVNVHLGYNQEDSLVMNR+SLERGM
Sbjct: 776  FRTMISDCLGKPGYSEGHKGIVPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGM 835

Query: 1269 FRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGD 1090
            FRSEH+RSYK+E++N E+  KK K+++ V FGKM SKIGRVDSLDDDGFP+IGANLQ GD
Sbjct: 836  FRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGD 895

Query: 1089 IVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMH 910
            IVIG+ A SGVDHSIKLKHTERGMVQKVV+SAND+GKNFAVVSLRQVRTPCLGDKFSSMH
Sbjct: 896  IVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMH 955

Query: 909  GQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYA 730
            GQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ               L++A
Sbjct: 956  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHA 1015

Query: 729  TPFSTPSVEDITSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVK 550
            TPFST SV+ I  QLHR GF+RWG+ERVY+GRTGEM+ SLIFMGPT YQRL HMAEDKVK
Sbjct: 1016 TPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVK 1075

Query: 549  FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICR 370
            FRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS+ MHICR
Sbjct: 1076 FRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICR 1135

Query: 369  KCQNMANVIQRPVFGGRKIRGPFCRFCDSVEHVVRVNVPYGAKLLCQELFSMGISLKFDT 190
            +C+N++NVIQR V GGRK+RGP+CR+C+S E +V+VNVPYGAKLLCQELFSMGISLKF+T
Sbjct: 1136 RCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFET 1195

Query: 189  ELC 181
            +LC
Sbjct: 1196 QLC 1198


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score = 1654 bits (4283), Expect = 0.0
 Identities = 830/1203 (68%), Positives = 967/1203 (80%), Gaps = 9/1203 (0%)
 Frame = -1

Query: 3762 SSISEKFSNGSTKMDFDDYVDFHSSDSEDELDCAMQGLDEGFLKAFCRKASTAFFDQYGL 3583
            SS+ EK SNG  +M+ DD  D   S   D+L+       + +LK FC+K + +FF++YGL
Sbjct: 50   SSMGEKLSNG-VQMEIDD--DLMGSIEIDDLN-------KEYLKTFCKKVAVSFFNEYGL 99

Query: 3582 ISHQINSYNDFVKYGLQEVFDSIGEIMIEPNYNPSKKGDGDWRRASLKFGKVTLDPPTFF 3403
            I HQINS+NDF+K G+Q VFDS GEI +EP Y+PSK+G+GDWR AS++FGKVTL+ P  +
Sbjct: 100  IQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRGEGDWRYASVRFGKVTLERPRVW 159

Query: 3402 TGEKFSAVEGAQEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGVE-KF 3226
             GE        +E L   PRHARLQNMTY+S+++ + H QVYT+ + RSDK+KTG + K+
Sbjct: 160  AGES-----DGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKLVRSDKYKTGKDNKY 214

Query: 3225 VEKKIVSEYHDVVNFGRLPVMVKSNLCLMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQI 3046
            VEKK++ E +  +  GR+PVMVKS LC M  VE+ DCE+D GGYF+IKGAEKTFIAQEQI
Sbjct: 215  VEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFLIKGAEKTFIAQEQI 274

Query: 3045 CLKRLWVAKDPTWTVSYRPVSKRNRVYIKLVP-KLEQVLGGEKILSVYFFVTEIPLWILF 2869
            CLKRLWV+ +PTW V+YRP+ KR RVY+KL P K E   GGEK+L+VYF  TEIP+WILF
Sbjct: 275  CLKRLWVSSNPTWMVAYRPIWKRKRVYVKLEPPKDENNRGGEKVLTVYFSSTEIPIWILF 334

Query: 2868 FALGVSNDREAVKLIDIDTEDSAIENILIASIYEADKKFEG----FRKGGNAIKHIKELM 2701
            FALG S+D+E V LID + +D+ I NIL+ASI+EAD++ E     FR+ GNAI  + +L+
Sbjct: 335  FALGASSDKEVVDLIDFNIDDAGISNILVASIHEADREAEKKGMYFRRQGNAISFVDKLV 394

Query: 2700 QDCKFPPTESVEDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKX 2521
            + CKFPP ES+++CI  YLFP+     QKA FL YMVKCLL+AY GRRK DNRDD RNK 
Sbjct: 395  KSCKFPPGESIQECISKYLFPNFSGVKQKARFLGYMVKCLLQAYTGRRKCDNRDDFRNKR 454

Query: 2520 XXXXXXXXXXXLKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTG 2347
                       L+VHI+HAERRMVKA+Q++L  D+D++ I  YLDASIITNGLSRAFSTG
Sbjct: 455  LELAGELLERELRVHIRHAERRMVKAMQRELYGDRDLRPIENYLDASIITNGLSRAFSTG 514

Query: 2346 AWVHPYKRMERTSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCF 2167
             W HP+KRMER SGVVATLRRTNPLQ  ADMRKTRQQV YTG+VGDARYPHPSHWGK+CF
Sbjct: 515  QWSHPFKRMERISGVVATLRRTNPLQMTADMRKTRQQVQYTGKVGDARYPHPSHWGKVCF 574

Query: 2166 LSTPDGENCGLVKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLD 1987
            LSTPDGENCGLVKNLA TGLVST VL+   L+ K  +CGME LVDD S    GK+KVFLD
Sbjct: 575  LSTPDGENCGLVKNLAITGLVSTEVLDP--LVDKLFDCGMEKLVDDTSTKLSGKNKVFLD 632

Query: 1986 GDWVGMCKDSSSFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNL 1807
            GDWVG+C+D  SFV +LR +RR  E+P Q+EIKRD+   EVRIF+DAGRILRPLLVV+NL
Sbjct: 633  GDWVGVCEDPISFVVELRTKRRHKELPQQVEIKRDEQQGEVRIFSDAGRILRPLLVVENL 692

Query: 1806 KKIKELKGD-FMFQSLLDNXXXXXXXXXXXEDCQTAWGIKYLFTAELENPPVKYTHCELD 1630
            KK+K  KGD F FQSLLD            EDC TAWGIKYL     ++PPVKYTHCELD
Sbjct: 693  KKVKTFKGDDFTFQSLLDKGIVELIGAEEEEDCSTAWGIKYLLKGH-DDPPVKYTHCELD 751

Query: 1629 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPL 1450
             SFLLGLSCG+IP+ANHDHARRVLYQSEKHSQQAIG+STTN NIRVDT SHQLYYPQRPL
Sbjct: 752  MSFLLGLSCGIIPYANHDHARRVLYQSEKHSQQAIGFSTTNPNIRVDTLSHQLYYPQRPL 811

Query: 1449 FRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGM 1270
            FRTM++D              +PRPE+FN Q AIVAVNVHLGYNQEDSLVMNR+SLERGM
Sbjct: 812  FRTMISD--------------LPRPEYFNGQIAIVAVNVHLGYNQEDSLVMNRASLERGM 857

Query: 1269 FRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGD 1090
            FRSEH+RSYK+E++N E+  KK K+++ V FGKM SKIGRVDSLDDDGFP+IGANLQ GD
Sbjct: 858  FRSEHIRSYKSEVDNNESLDKKRKSEDSVHFGKMQSKIGRVDSLDDDGFPFIGANLQNGD 917

Query: 1089 IVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMH 910
            IVIG+ A SGVDHSIKLKHTERGMVQKVV+SAND+GKNFAVVSLRQVRTPCLGDKFSSMH
Sbjct: 918  IVIGRCAESGVDHSIKLKHTERGMVQKVVVSANDDGKNFAVVSLRQVRTPCLGDKFSSMH 977

Query: 909  GQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYA 730
            GQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ               L++A
Sbjct: 978  GQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACGGLLRHA 1037

Query: 729  TPFSTPSVEDITSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVK 550
            TPFST SV+ I  QLHR GF+RWG+ERVY+GRTGEM+ SLIFMGPT YQRL HMAEDKVK
Sbjct: 1038 TPFSTLSVDAIADQLHRAGFSRWGHERVYNGRTGEMLRSLIFMGPTFYQRLIHMAEDKVK 1097

Query: 549  FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICR 370
            FRNTGPVHPLTRQPV+DRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDS+ MHICR
Sbjct: 1098 FRNTGPVHPLTRQPVSDRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSAYMHICR 1157

Query: 369  KCQNMANVIQRPVFGGRKIRGPFCRFCDSVEHVVRVNVPYGAKLLCQELFSMGISLKFDT 190
            +C+N++NVIQR V GGRK+RGP+CR+C+S E +V+VNVPYGAKLLCQELFSMGISLKF+T
Sbjct: 1158 RCKNISNVIQRSVAGGRKVRGPYCRYCESSEEIVKVNVPYGAKLLCQELFSMGISLKFET 1217

Query: 189  ELC 181
            +LC
Sbjct: 1218 QLC 1220


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
            gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
            subunit, putative [Ricinus communis]
          Length = 1203

 Score = 1586 bits (4107), Expect = 0.0
 Identities = 797/1203 (66%), Positives = 944/1203 (78%), Gaps = 5/1203 (0%)
 Frame = -1

Query: 3774 EAGPSSISEKFSNGSTKMDFDDYVDFHSSDSEDELDCAMQGLDEGFLKAFCRKASTAFFD 3595
            + G SS +EK    ST MD D   D  S     +   ++  + E  LK FC KA+T FF+
Sbjct: 13   DIGTSSKTEKLFKASTDMDIDFDSDSGSDCDFMDSSTSLTDIGEAKLKDFCNKAATLFFN 72

Query: 3594 QYGLISHQINSYNDFVKYGLQEVFDSIGEIMIEPNYNPSKKGDGDWRRASLKFGKVTLDP 3415
            +YGLISHQINSYNDF+  G+Q+ FDS GE+++EP Y+PSKKG+ +WR AS+KFGKV L+ 
Sbjct: 73   EYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKGENEWRYASVKFGKVALEK 132

Query: 3414 PTFFTGEKFSAVEGAQEDLALFPRHARLQNMTYASKIRVEAHLQVYTEGISRSDKFKTGV 3235
            PTF++G          ++  + PRHARLQNMTY+SK++V   ++VYT  + RSDKFKTG 
Sbjct: 133  PTFWSGA---------DEHKMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVRSDKFKTGK 183

Query: 3234 EKFVEKKIVSEYHDVVNFGRLPVMVKSNLCLMKNVEKRDCEFDEGGYFVIKGAEKTFIAQ 3055
            +++V+K++++  +  +  G LPVMVKS+LC MK  EK DC+FD GGYF+IKGAEK FIAQ
Sbjct: 184  DQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKGAEKVFIAQ 243

Query: 3054 EQICLKRLWVAKDPTWTVSYRPVSKRNRVYIKLV--PKLEQVLGGEKILSVYFFVTEIPL 2881
            EQICLKRLW++    WTVSY+   KRNR+ ++LV    LE V   +K L+VYF  TEIPL
Sbjct: 244  EQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEKKCLTVYFLSTEIPL 303

Query: 2880 WILFFALGVSNDREAVKLIDIDTEDSAIENILIASIYEADKKFEGFRKGGNAIKHIKELM 2701
            WILFFALGV++D+E + LI   + D+ I NI  ASI++AD+K EGFR+G  A++++   +
Sbjct: 304  WILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASIHDADEKTEGFRRGKEALEYVVRQI 363

Query: 2700 QDCKFPPTESVEDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGRRKVDNRDDLRNKX 2521
            +  +FPP E+ ED    YLFP L S  QKA FL YMVKCLL+AY G+RK +N D  RNK 
Sbjct: 364  RGTRFPPGEN-EDFFLLYLFPTLHSLRQKARFLGYMVKCLLQAYNGQRKCNNWDSFRNKR 422

Query: 2520 XXXXXXXXXXXLKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDASIITNGLSRAFSTG 2347
                       LKVHI HA RRM KA+QKDL  D+D++ I  YLDASI+TNGLSRAFSTG
Sbjct: 423  FELAKELLERELKVHIAHARRRMAKALQKDLYGDRDVRPIEHYLDASIVTNGLSRAFSTG 482

Query: 2346 AWVHPYKRMERTSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDARYPHPSHWGKLCF 2167
            AW HPYKRMER SGVVA L R NPLQ   D+RKTR  V YTG+VGDAR+PHPSHWG++CF
Sbjct: 483  AWSHPYKRMERISGVVANLGRANPLQTMVDLRKTRYHVQYTGKVGDARFPHPSHWGRVCF 542

Query: 2166 LSTPDGENCGLVKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDASFLRDGKHKVFLD 1987
            LSTPDGENCGLVKNLA+TGLVS ++LE   L+ K    GME + +D+    D K KVFL+
Sbjct: 543  LSTPDGENCGLVKNLATTGLVSVNILEP--LIDKLIARGMEKVPEDSHSDLDEKDKVFLN 600

Query: 1986 GDWVGMCKDSSSFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADAGRILRPLLVVQNL 1807
            G+WVG+C+DS  FVA+LRR RR+ ++P Q+EIKRD+   EVRIF+DAGRILRPLLVVQNL
Sbjct: 601  GEWVGVCEDSRLFVAELRRLRRRKKLPQQVEIKRDEQQQEVRIFSDAGRILRPLLVVQNL 660

Query: 1806 KKIKELKG-DFMFQSLLDNXXXXXXXXXXXEDCQTAWGIKYLFTAELENPPVKYTHCELD 1630
             KI+  KG +  FQSLLD            EDC TAWGIK+L +       +KYTHCELD
Sbjct: 661  HKIEAFKGGNCTFQSLLDKGIIEFVGTEEEEDCSTAWGIKFLLSGVDGKQSLKYTHCELD 720

Query: 1629 SSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVDTNSHQLYYPQRPL 1450
             SFLLGLSCG+IPFANHDHARRVLYQ++KHSQQAIG+ TTN NIRVDT SHQLYYPQRPL
Sbjct: 721  MSFLLGLSCGIIPFANHDHARRVLYQAQKHSQQAIGFPTTNPNIRVDTLSHQLYYPQRPL 780

Query: 1449 FRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQEDSLVMNRSSLERGM 1270
            FRT+ +DCLGK   +  H G++P+PE +N Q AIVAVNVHLGYNQEDSLVMNR+SLERGM
Sbjct: 781  FRTVTSDCLGKPGDTRGHNGIVPKPELYNGQNAIVAVNVHLGYNQEDSLVMNRASLERGM 840

Query: 1269 FRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDDGFPYIGANLQTGD 1090
            FRSEH+RSYKA+++N E   K+ K D+ V+FGK+PSKIGRVDSLDDDGFP+IGANLQ+GD
Sbjct: 841  FRSEHIRSYKADVDNKELLDKRRKYDDNVNFGKIPSKIGRVDSLDDDGFPFIGANLQSGD 900

Query: 1089 IVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQVRTPCLGDKFSSMH 910
            IVIG+ A SG DHSIKLKHTERGMVQKVVLS+NDEGKNFAVVSLRQVR+PCLGDKFSSMH
Sbjct: 901  IVIGRCAESGPDHSIKLKHTERGMVQKVVLSSNDEGKNFAVVSLRQVRSPCLGDKFSSMH 960

Query: 909  GQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXXXXXXXXXXXLKYA 730
            GQKGVLGFLESQENFPFT+QGIVPDIVINPH+FPSRQTPGQ               +KYA
Sbjct: 961  GQKGVLGFLESQENFPFTRQGIVPDIVINPHSFPSRQTPGQLLEAALGKGIACGGSMKYA 1020

Query: 729  TPFSTPSVEDITSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTCYQRLTHMAEDKVK 550
            TPFST SVE IT+QLHR GF+RWGNERVY+GRTGEMV SLIFMGPT YQRL HMAEDKVK
Sbjct: 1021 TPFSTLSVEAITNQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLIHMAEDKVK 1080

Query: 549  FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGAAANLHERLFTLSDSSQMHICR 370
            FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGA+ANLHERLFTLSDSSQMHIC+
Sbjct: 1081 FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQMHICQ 1140

Query: 369  KCQNMANVIQRPVFGGRKIRGPFCRFCDSVEHVVRVNVPYGAKLLCQELFSMGISLKFDT 190
            KC+N+ANVIQR V GGRKIRGP+CR C+SV+ +V+VNVPYGAKLLCQELFSMGISLKF+T
Sbjct: 1141 KCKNVANVIQRAVPGGRKIRGPYCRVCESVDEIVKVNVPYGAKLLCQELFSMGISLKFET 1200

Query: 189  ELC 181
             LC
Sbjct: 1201 RLC 1203


>gb|AAY68206.1| RNA polymerase IV second largest subunit [Solanum lycopersicum]
          Length = 1123

 Score = 1584 bits (4101), Expect = 0.0
 Identities = 797/1127 (70%), Positives = 904/1127 (80%), Gaps = 16/1127 (1%)
 Frame = -1

Query: 3780 LEEAGPSSISEKFSNGSTKMDFD-------DYVDFHSSDSEDELDC----AMQGLDEGFL 3634
            +EE G SS  EK SNGST+MDFD       D  D+   + EDE D      ++ L E FL
Sbjct: 1    MEEVGCSSGKEKISNGSTRMDFDIDDLFEVDDDDWDEDEDEDEDDSHDMVLIKELGESFL 60

Query: 3633 KAFCRKASTAFFDQYGLISHQINSYNDFVKYGLQEVFDSIGEIMIEPNYNPSKKGDGDWR 3454
            K FC+KAST FF++YG ISHQINSYNDF+ YG+Q VFDS+GEI +EP Y+PSK+GDGDW+
Sbjct: 61   KNFCKKASTGFFEKYGSISHQINSYNDFINYGIQRVFDSVGEIHVEPGYDPSKRGDGDWK 120

Query: 3453 RASLKFGKVTLDPPTFFTGEKFSAVEGAQEDLALFPRHARLQNMTYASKIRVEAHLQVYT 3274
             AS+KFGKVTL+ P F+ GEKFS V G +E L L PRHARLQNMTY+++I VE H+QVYT
Sbjct: 121  HASVKFGKVTLERPKFWAGEKFS-VGGGKEYLDLLPRHARLQNMTYSARIMVETHVQVYT 179

Query: 3273 EGISRSDKFKTGVEKFVEKKIVSEYHDVVNFGRLPVMVKSNLCLMKNVEKRDCEFDEGGY 3094
            + + RSDKFKTGV++FV+K+   E    V  GR+PVMV S LC M  V+K DCEFD GGY
Sbjct: 180  KKLVRSDKFKTGVDRFVDKEWEVEGKRDVLIGRIPVMVNSELCWMNGVDKLDCEFDHGGY 239

Query: 3093 FVIKGAEKTFIAQEQICLKRLWVAKDPTWTVSYRPVSKRNRVYIKLVP--KLEQVLGGEK 2920
            F+ KGAEKTFIAQEQ+CLKRLWV+ +PTW V YRP  KR RVYIKL    KLE + GGEK
Sbjct: 240  FIAKGAEKTFIAQEQLCLKRLWVSNNPTWMVGYRPGEKRKRVYIKLTETLKLEHIKGGEK 299

Query: 2919 ILSVYFFVTEIPLWILFFALGVSNDREAVKLIDIDTEDSAIENILIASIYEADKKFEGFR 2740
             LSVY  + E+P+W+LFFALGVS+DRE V LID+D ED+ I NIL+ASI+EADK  E FR
Sbjct: 300  ALSVYI-LAEMPIWVLFFALGVSSDREVVNLIDVDIEDTTIVNILVASIHEADKNCEDFR 358

Query: 2739 KGGNAIKHIKELMQDCKFPPTESVEDCIRNYLFPHLKSPAQKASFLAYMVKCLLEAYRGR 2560
            KG  A+ ++  L+++CKFPP ESVE+CI  YLFP+L    QKA FL YMVKCLL ++ GR
Sbjct: 359  KGKKALAYVDRLIKNCKFPPQESVEECINAYLFPNLSGFKQKARFLGYMVKCLLHSFIGR 418

Query: 2559 RKVDNRDDLRNKXXXXXXXXXXXXLKVHIKHAERRMVKAIQKDL--DKDIQSIGLYLDAS 2386
            RKVDNRDD RNK            L+ HIKHAERRMVKA+Q+DL  D+ +Q I  YLDAS
Sbjct: 419  RKVDNRDDFRNKRLELAGELLERELRAHIKHAERRMVKAMQRDLYGDRQVQPIEHYLDAS 478

Query: 2385 IITNGLSRAFSTGAWVHPYKRMERTSGVVATLRRTNPLQAAADMRKTRQQVSYTGRVGDA 2206
            IITNGLSRAFSTG W HPYKRMER SGVVATLRRTNPLQ  ADMRK+RQQV+YTG+VGDA
Sbjct: 479  IITNGLSRAFSTGHWCHPYKRMERVSGVVATLRRTNPLQMTADMRKSRQQVTYTGKVGDA 538

Query: 2205 RYPHPSHWGKLCFLSTPDGENCGLVKNLASTGLVSTHVLEREVLLRKFQECGMENLVDDA 2026
            RYPHPSHWGKLCFLSTPDGENCGLVKNLAS GLVST +L+    L     CGM+ LVDD 
Sbjct: 539  RYPHPSHWGKLCFLSTPDGENCGLVKNLASMGLVSTIILKP--FLETLFRCGMQKLVDDC 596

Query: 2025 SFLRDGKHKVFLDGDWVGMCKDSSSFVAKLRRRRRKVEVPHQIEIKRDKHHAEVRIFADA 1846
            S    GK KV LDG+WVG+C+DS+ FV+KLRR+RR+ EVPHQ+E+KRD+   EVRIF+D 
Sbjct: 597  STSLHGKQKVLLDGEWVGVCEDSALFVSKLRRKRRRNEVPHQVEVKRDELQGEVRIFSDP 656

Query: 1845 GRILRPLLVVQNLKKIKELKG-DFMFQSLLDNXXXXXXXXXXXEDCQTAWGIKYLFTAEL 1669
            GRILRPLLVV NLKKIK LKG D+ FQSLLDN           EDC+TAWG++Y+  A+ 
Sbjct: 657  GRILRPLLVVSNLKKIKALKGGDYGFQSLLDNGIIELIGPEEEEDCRTAWGVEYILKADK 716

Query: 1668 ENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKHSQQAIGYSTTNSNIRVD 1489
            ENPP KYTHCELD SFLLGLSCG+IPFANHDHARRVLYQSEKHSQQAIG+ST N N RVD
Sbjct: 717  ENPPAKYTHCELDMSFLLGLSCGIIPFANHDHARRVLYQSEKHSQQAIGFSTVNPNNRVD 776

Query: 1488 TNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNSQCAIVAVNVHLGYNQED 1309
            TN+HQLYYPQRPLFRTMLAD LGK   + + KGM+PRPE+FN QCAIVAVNVHLGYNQED
Sbjct: 777  TNTHQLYYPQRPLFRTMLADSLGKPKCAQYQKGMLPRPEYFNGQCAIVAVNVHLGYNQED 836

Query: 1308 SLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVSFGKMPSKIGRVDSLDDD 1129
            SLVMNR+SLERGMFRSEHVRSYKAE++N EA  KK+K ++ V+FGK  SKIGRVDSLDDD
Sbjct: 837  SLVMNRASLERGMFRSEHVRSYKAEVDNKEAMAKKLKIEDSVNFGKTQSKIGRVDSLDDD 896

Query: 1128 GFPYIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVLSANDEGKNFAVVSLRQV 949
            GFP+IGANLQ+GDI+IGK + SG DHS+KLKHTERGMVQKV+LSANDEGKNFAVVSLRQV
Sbjct: 897  GFPFIGANLQSGDIIIGKFSESGADHSVKLKHTERGMVQKVLLSANDEGKNFAVVSLRQV 956

Query: 948  RTPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQXXXXXX 769
            R+PCLGDKFSSMHGQKGVLGFLESQENFPFT QGIVPDIVINPHAFPSRQTPGQ      
Sbjct: 957  RSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGIVPDIVINPHAFPSRQTPGQLLEAAL 1016

Query: 768  XXXXXXXXXLKYATPFSTPSVEDITSQLHRLGFTRWGNERVYDGRTGEMVDSLIFMGPTC 589
                      KYATPFST SV+ I  QL   GFTRWGNERVY+GRTGEMV SLIFMGPT 
Sbjct: 1017 GKGIALGGGQKYATPFSTLSVDAIMEQLQGRGFTRWGNERVYNGRTGEMVHSLIFMGPTF 1076

Query: 588  YQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 448
            YQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL
Sbjct: 1077 YQRLIHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCL 1123


>ref|XP_002324332.1| predicted protein [Populus trichocarpa] gi|222865766|gb|EEF02897.1|
            predicted protein [Populus trichocarpa]
          Length = 1160

 Score = 1572 bits (4070), Expect = 0.0
 Identities = 781/1172 (66%), Positives = 928/1172 (79%), Gaps = 6/1172 (0%)
 Frame = -1

Query: 3681 EDELDCA-MQGLDEGFLKAFCRKASTAFFDQYGLISHQINSYNDFVKYGLQEVFDSIGEI 3505
            ED +D   +  L +  L++FC+KA++ FFD+YGLISHQINSYN F+  GLQ VFDS GE+
Sbjct: 7    EDLMDTTNLNELGKETLQSFCKKAASLFFDEYGLISHQINSYNSFINSGLQRVFDSFGEV 66

Query: 3504 MIEPNYNPSKKGDGDWRRASLKFGKVTLDPPTFFTGEKFSAVEGAQEDLALFPRHARLQN 3325
             +EP Y+ SK+ DG+WRRAS++FGKVTLD P+F+ G    A         +FPRHARLQN
Sbjct: 67   AVEPGYDSSKQKDGEWRRASVRFGKVTLDRPSFWGGTSSDAEHN------MFPRHARLQN 120

Query: 3324 MTYASKIRVEAHLQVYTEGISRSDKFKTGVEKFVEKKIVSEYHDVVNFGRLPVMVKSNLC 3145
            MTY++++++  ++QVYT+ + RSDKFKTG++K V+K +V   +  +  GR+PVMVKS+LC
Sbjct: 121  MTYSARMKIHVNVQVYTQTVGRSDKFKTGIDKVVQKNVVHTENREIIIGRIPVMVKSDLC 180

Query: 3144 LMKNVEKRDCEFDEGGYFVIKGAEKTFIAQEQICLKRLWVAKDPTWTVSYRPVSKRNRVY 2965
             +  VEK DC+FD GGYF+IKGAEK FIAQEQIC+KRLW++    WTVSY+   KRNR+ 
Sbjct: 181  WLTTVEKGDCDFDHGGYFLIKGAEKVFIAQEQICMKRLWISNSQGWTVSYKSEVKRNRLI 240

Query: 2964 IKLVP--KLEQVLGGEKILSVYFFVTEIPLWILFFALGVSNDREAVKLIDIDTEDSAIEN 2791
            ++LV   KLE + G +K L VYF  TEIPLWILFFALGV +D+E + LID  + D++I N
Sbjct: 241  VRLVELSKLEYIKGEKKGLCVYFLSTEIPLWILFFALGVRSDKEVIDLIDYASNDASIVN 300

Query: 2790 ILIASIYEADKKFEGFRKGGNAIKHIKELMQDCKFPPTESVEDCIRNYLFPHLKSPAQKA 2611
            I  ASI++AD+K E FR+   A+ ++ +L++  +FPP ES+ED I  YLFP L S   KA
Sbjct: 301  IFFASIHDADEKCEHFRREDRALDYVDKLLKKTRFPPKESIEDAISAYLFPRLNSRRHKA 360

Query: 2610 SFLAYMVKCLLEAYRGRRKVDNRDDLRNKXXXXXXXXXXXXLKVHIKHAERRMVKAIQKD 2431
             FL YMVKCLLEAY G RK DNRD  RNK            LKVH+ HA RRM KA+Q+D
Sbjct: 361  RFLGYMVKCLLEAYTGHRKCDNRDSFRNKRFELASELLERELKVHVSHALRRMTKALQRD 420

Query: 2430 L--DKDIQSIGLYLDASIITNGLSRAFSTGAWVHPYKRMERTSGVVATLRRTNPLQAAAD 2257
            L  D+D+  I  YLDASI+TNGL+RAFSTGAW HP+K MER SGVV  L R NPLQ   D
Sbjct: 421  LYGDRDVHPIEHYLDASIVTNGLTRAFSTGAWCHPFKWMERVSGVVGNLGRANPLQTMID 480

Query: 2256 MRKTRQQVSYTGRVGDARYPHPSHWGKLCFLSTPDGENCGLVKNLASTGLVSTHVLEREV 2077
            +RKTRQQV YTG+VGDARYPHPSHWG++CFLSTPDGENCGLVKNLA TG+VST++ E   
Sbjct: 481  LRKTRQQVLYTGKVGDARYPHPSHWGRVCFLSTPDGENCGLVKNLAVTGVVSTNISES-- 538

Query: 2076 LLRKFQECGMENLVDDASFLRDGKHKVFLDGDWVGMCKDSSSFVAKLRRRRRKVEVPHQI 1897
            L+ K  + GME LVDD     DGKHKVFL+G+WVG+C+DS  FV +LR  RR+ E+P+Q+
Sbjct: 539  LVDKLFDSGMEKLVDDTYTKLDGKHKVFLNGEWVGVCEDSCLFVGELRSMRRRRELPYQV 598

Query: 1896 EIKRDKHHAEVRIFADAGRILRPLLVVQNLKKIKELKG-DFMFQSLLDNXXXXXXXXXXX 1720
            EIKRD+   EVRIF+DAGRILRPLLVV+NL KIK  KG +++F SLLD            
Sbjct: 599  EIKRDEQQREVRIFSDAGRILRPLLVVENLDKIKAFKGGNYIFTSLLDKGIIEFIGTEEE 658

Query: 1719 EDCQTAWGIKYLFTAELENPPVKYTHCELDSSFLLGLSCGLIPFANHDHARRVLYQSEKH 1540
            EDC TAWGIK+L        P+KY+HCELD SFLLGLSCG+IPFANHDHARRVLYQ++KH
Sbjct: 659  EDCCTAWGIKFLLADIEGKQPMKYSHCELDMSFLLGLSCGIIPFANHDHARRVLYQAQKH 718

Query: 1539 SQQAIGYSTTNSNIRVDTNSHQLYYPQRPLFRTMLADCLGKSTYSHHHKGMIPRPEFFNS 1360
            SQQAIG+STTN NIRVDT SHQL+YPQRPLFRTM++DCL           ++P+PE FN 
Sbjct: 719  SQQAIGFSTTNPNIRVDTLSHQLHYPQRPLFRTMISDCL-----------VLPKPELFNG 767

Query: 1359 QCAIVAVNVHLGYNQEDSLVMNRSSLERGMFRSEHVRSYKAELENAEAGGKKVKTDELVS 1180
            Q AIVAVNVHLGYNQEDSLVMNR+SLERGMFRSEH+RSYKAE++N E   K+ K+++ ++
Sbjct: 768  QNAIVAVNVHLGYNQEDSLVMNRASLERGMFRSEHIRSYKAEVDNKELTDKRRKSEDSIT 827

Query: 1179 FGKMPSKIGRVDSLDDDGFPYIGANLQTGDIVIGKHAASGVDHSIKLKHTERGMVQKVVL 1000
            FGK+ SKIGRVDSLDDDGFP+IGAN+Q+GDIVIGK A SG DHS+KLKHTERGMVQKVVL
Sbjct: 828  FGKIQSKIGRVDSLDDDGFPFIGANMQSGDIVIGKCAESGADHSVKLKHTERGMVQKVVL 887

Query: 999  SANDEGKNFAVVSLRQVRTPCLGDKFSSMHGQKGVLGFLESQENFPFTKQGIVPDIVINP 820
            S+NDEGKNFAVVSLRQVR+PCLGDKFSSMHGQKGVLGFLESQENFPFT QG+VPDIVINP
Sbjct: 888  SSNDEGKNFAVVSLRQVRSPCLGDKFSSMHGQKGVLGFLESQENFPFTIQGVVPDIVINP 947

Query: 819  HAFPSRQTPGQXXXXXXXXXXXXXXXLKYATPFSTPSVEDITSQLHRLGFTRWGNERVYD 640
            HAFPSRQTPGQ                +YATPFST SV+DI  QLHR  F+RWGNERVY+
Sbjct: 948  HAFPSRQTPGQLLEAALGKGIACGGSKRYATPFSTLSVDDIIDQLHRAKFSRWGNERVYN 1007

Query: 639  GRTGEMVDSLIFMGPTCYQRLTHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 460
            GRTGEMV SLIFMGPT YQRL HMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME
Sbjct: 1008 GRTGEMVRSLIFMGPTFYQRLVHMAEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEME 1067

Query: 459  RDCLIAHGAAANLHERLFTLSDSSQMHICRKCQNMANVIQRPVFGGRKIRGPFCRFCDSV 280
            RDCLIAHGA+ANLHERLFTLSDSS+MHIC+KC+N+ANVIQR V GGRKIRGP+CR C+SV
Sbjct: 1068 RDCLIAHGASANLHERLFTLSDSSEMHICQKCKNVANVIQRGVPGGRKIRGPYCRVCESV 1127

Query: 279  EHVVRVNVPYGAKLLCQELFSMGISLKFDTEL 184
            + +V+V+VPYGAKLLCQELFSMGISLKFDT +
Sbjct: 1128 DDLVKVSVPYGAKLLCQELFSMGISLKFDTRV 1159