BLASTX nr result
ID: Scutellaria22_contig00002603
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria22_contig00002603
(3877 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhodode... 2234 0.0
ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, puta... 2233 0.0
gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrh... 2226 0.0
ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 ... 2217 0.0
ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II su... 2209 0.0
>gb|AAZ08457.1| RNA polymerase II second largest subunit [Rhododendron macrophyllum]
Length = 1191
Score = 2234 bits (5789), Expect = 0.0
Identities = 1110/1175 (94%), Positives = 1130/1175 (96%)
Frame = -3
Query: 3659 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 3480
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAETI
Sbjct: 25 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84
Query: 3479 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3300
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 85 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144
Query: 3299 ETQDFTKVFIGKVPIMLRSSYCTLYQNTEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3120
ETQDFTKVFIGKVPIMLRSSYCTLYQN+EKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 145 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 204
Query: 3119 MSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 2940
MSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264
Query: 2939 PYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDY 2760
PYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265 PYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQMMELLRPSLEEAFVIQNQQVALDY 324
Query: 2759 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2580
IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 384
Query: 2579 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2400
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 444
Query: 2399 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2220
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504
Query: 2219 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2040
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 505 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564
Query: 2039 PQATKIFVNGCWVGIHRNPDMLVSTXXXXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCS 1860
PQATKIFVNGCWVGIHR+PDMLV T RVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 565 PQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624
Query: 1859 RPLFIVDKQRLLIKKKDIRALQQRESPEDDGTVXXXXXGWHDLVAKGFXXXXXXXXXXXX 1680
RPLFIV+KQRLLIK+KDI+ALQQRE+PED G WHDLVAKGF
Sbjct: 625 RPLFIVEKQRLLIKRKDIQALQQRETPEDGG--------WHDLVAKGFIEYIDTEEEETT 676
Query: 1679 XXXXXINDLVSAREKPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 1500
INDLVSAR PEEAYS+TYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 677 MISMTINDLVSARLNPEEAYSETYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 736
Query: 1499 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 1320
KQAMGIYVTNYQFRMDT+AYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 737 KQAMGIYVTNYQFRMDTVAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 796
Query: 1319 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLD 1140
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLD
Sbjct: 797 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLD 856
Query: 1139 DDGLAPPGTRVSGEDVIIGKTSPMAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 960
DDGLAPPGTRVSGEDV+IGKT+P+A DEAQG AARYT+RDHSTSLRHSETGMVDQVLLTT
Sbjct: 857 DDGLAPPGTRVSGEDVVIGKTTPIAQDEAQGPAARYTRRDHSTSLRHSETGMVDQVLLTT 916
Query: 959 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHA 780
NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHA
Sbjct: 917 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTMEGITPDIIVNPHA 976
Query: 779 IPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 600
IPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 977 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1036
Query: 599 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 420
TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1037 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1096
Query: 419 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 240
CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP
Sbjct: 1097 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1156
Query: 239 YACKLLFQELMAMAIAPRMLTKDIKLNKEQKKKGA 135
YACKLLFQELM+MAIAPRMLTKD+K K++KKK A
Sbjct: 1157 YACKLLFQELMSMAIAPRMLTKDVKQAKDKKKKQA 1191
>ref|XP_002519060.1| DNA-directed RNA polymerase II subunit, putative [Ricinus communis]
gi|223541723|gb|EEF43271.1| DNA-directed RNA polymerase
II subunit, putative [Ricinus communis]
Length = 1194
Score = 2233 bits (5787), Expect = 0.0
Identities = 1110/1175 (94%), Positives = 1129/1175 (96%)
Frame = -3
Query: 3659 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 3480
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAETI
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 3479 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3300
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 147
Query: 3299 ETQDFTKVFIGKVPIMLRSSYCTLYQNTEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3120
ETQDFTKVFIGKVPIMLRSSYCTLYQN+EKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 3119 MSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 2940
MSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 267
Query: 2939 PYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDY 2760
PYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSDTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 2759 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2580
IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 2579 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2400
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 2399 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2220
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 2219 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2040
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
Query: 2039 PQATKIFVNGCWVGIHRNPDMLVSTXXXXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCS 1860
PQATKIFVNGCWVGIHR+PDMLV T RVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 568 PQATKIFVNGCWVGIHRDPDMLVKTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
Query: 1859 RPLFIVDKQRLLIKKKDIRALQQRESPEDDGTVXXXXXGWHDLVAKGFXXXXXXXXXXXX 1680
RPLFIV+KQRLLIKKKDI ALQQRES E+ G WHDLVAKGF
Sbjct: 628 RPLFIVEKQRLLIKKKDIHALQQRESSEEGG--------WHDLVAKGFIEYIDTEEEETT 679
Query: 1679 XXXXXINDLVSAREKPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 1500
I+DLV AR PEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 680 MISMTIHDLVQARINPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
Query: 1499 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 1320
KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 740 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 799
Query: 1319 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLD 1140
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLD
Sbjct: 800 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLD 859
Query: 1139 DDGLAPPGTRVSGEDVIIGKTSPMAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 960
DDGLAPPGTRVSGEDVIIGKT+P+A +EAQGQ+ARYT+RDHS SLRHSETG+VDQVLLTT
Sbjct: 860 DDGLAPPGTRVSGEDVIIGKTTPIAQEEAQGQSARYTRRDHSISLRHSETGIVDQVLLTT 919
Query: 959 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHA 780
NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHA
Sbjct: 920 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
Query: 779 IPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 600
IPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 980 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
Query: 599 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 420
TGRRLT+MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1040 TGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
Query: 419 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 240
CMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP
Sbjct: 1100 CMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1159
Query: 239 YACKLLFQELMAMAIAPRMLTKDIKLNKEQKKKGA 135
YACKLLFQELMAMAIAPRMLTKD+K K+QKKKGA
Sbjct: 1160 YACKLLFQELMAMAIAPRMLTKDVKPTKDQKKKGA 1194
>gb|AAY89348.1| RNA polymerase II second largest subunit [Antirrhinum majus]
Length = 1200
Score = 2226 bits (5767), Expect = 0.0
Identities = 1105/1175 (94%), Positives = 1129/1175 (96%)
Frame = -3
Query: 3659 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 3480
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPG QPDFAETI
Sbjct: 34 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGQQPDFAETI 93
Query: 3479 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3300
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 94 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 153
Query: 3299 ETQDFTKVFIGKVPIMLRSSYCTLYQNTEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3120
ETQDFTKVFIGKVPIMLRSSYCTLYQN+EKDLTELGECP DQGGYFIINGSEKVLIAQEK
Sbjct: 154 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEK 213
Query: 3119 MSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 2940
MSTNHVYVFKKRQPNKYAYVAEVRSMAE QNRPPSTMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 214 MSTNHVYVFKKRQPNKYAYVAEVRSMAEAQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 273
Query: 2939 PYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDY 2760
PYIRTEIPIIIVFRALGFVADKDILEHIC+N DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 274 PYIRTEIPIIIVFRALGFVADKDILEHICFNSSDTQMMELLRPSLEEAFVIQNQQVALDY 333
Query: 2759 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2580
IGKRG+TVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 334 IGKRGSTVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 393
Query: 2579 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2400
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQF IKAKTI
Sbjct: 394 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFXIKAKTI 453
Query: 2399 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2220
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRL+SPIGREGKLAKPRQL
Sbjct: 454 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLBSPIGREGKLAKPRQL 513
Query: 2219 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2040
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 514 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 573
Query: 2039 PQATKIFVNGCWVGIHRNPDMLVSTXXXXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCS 1860
PQATKIFVNG WVGIHRNPDMLVST RVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 574 PQATKIFVNGLWVGIHRNPDMLVSTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 633
Query: 1859 RPLFIVDKQRLLIKKKDIRALQQRESPEDDGTVXXXXXGWHDLVAKGFXXXXXXXXXXXX 1680
RPLFIV+KQRLLIKKKD++ALQQRESP+D G WH+LVAKGF
Sbjct: 634 RPLFIVEKQRLLIKKKDVQALQQRESPDDGG--------WHELVAKGFIEYIDTEEEETT 685
Query: 1679 XXXXXINDLVSAREKPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 1500
INDL+SA+ P EAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 686 MISMTINDLLSAKVNPTEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 745
Query: 1499 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 1320
KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN
Sbjct: 746 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 805
Query: 1319 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLD 1140
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR+NTMGMRHGSYDKLD
Sbjct: 806 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRSNTMGMRHGSYDKLD 865
Query: 1139 DDGLAPPGTRVSGEDVIIGKTSPMAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 960
DDGLAPPGTR SGEDVIIGKT+P++PD+AQGQAARYTKRDHSTSLRHSETGMVDQVLLTT
Sbjct: 866 DDGLAPPGTRCSGEDVIIGKTTPISPDDAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 925
Query: 959 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHA 780
NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHA
Sbjct: 926 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGISPDIIVNPHA 985
Query: 779 IPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 600
IPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 986 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1045
Query: 599 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 420
TGRRL+SMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1046 TGRRLSSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1105
Query: 419 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 240
CMIAHGAAHFLKERLFDQSDAYRIHVCE+CGLIAIANLKKNSFECRGCKNKTDIVQVHIP
Sbjct: 1106 CMIAHGAAHFLKERLFDQSDAYRIHVCEQCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1165
Query: 239 YACKLLFQELMAMAIAPRMLTKDIKLNKEQKKKGA 135
YACKLLFQELM+MAIAPRMLTKDIK +KEQ+KK A
Sbjct: 1166 YACKLLFQELMSMAIAPRMLTKDIKQSKEQRKKAA 1200
>ref|NP_001233889.1| DNA-directed RNA polymerase II subunit RPB2 [Solanum lycopersicum]
gi|11134656|sp|Q42877.1|RPB2_SOLLC RecName:
Full=DNA-directed RNA polymerase II subunit RPB2;
Short=RNA polymerase II subunit 2; Short=RNA polymerase
II subunit B2; AltName: Full=DNA-directed RNA polymerase
II 135 kDa polypeptide gi|1049068|gb|AAC49273.1| RNA
polymerase II subunit 2 [Solanum lycopersicum]
Length = 1191
Score = 2217 bits (5745), Expect = 0.0
Identities = 1098/1175 (93%), Positives = 1128/1175 (96%)
Frame = -3
Query: 3659 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 3480
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAETI
Sbjct: 25 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 84
Query: 3479 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3300
YKI+FGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT
Sbjct: 85 YKINFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 144
Query: 3299 ETQDFTKVFIGKVPIMLRSSYCTLYQNTEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3120
ETQDFTKVFIGKVPIMLRSSYCTLYQN+EKDLTELGECP DQGGYFIINGSEKVLIAQEK
Sbjct: 145 ETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQEK 204
Query: 3119 MSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 2940
MSTNHVYVFKKRQPNKYA+VAEVRSMA+TQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL
Sbjct: 205 MSTNHVYVFKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 264
Query: 2939 PYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDY 2760
PYIRTEIPIIIVFRALGFVADKDILEHICY+F DTQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 265 PYIRTEIPIIIVFRALGFVADKDILEHICYDFNDTQMMELLRPSLEEAFVIQNQQVALDY 324
Query: 2759 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2580
IGKRGATVGVT+EKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 325 IGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 384
Query: 2579 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2400
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 385 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 444
Query: 2399 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2220
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 445 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 504
Query: 2219 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2040
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 505 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 564
Query: 2039 PQATKIFVNGCWVGIHRNPDMLVSTXXXXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCS 1860
PQATKIFVNG WVGIHR+PDMLV T RVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 565 PQATKIFVNGTWVGIHRDPDMLVRTLRRLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 624
Query: 1859 RPLFIVDKQRLLIKKKDIRALQQRESPEDDGTVXXXXXGWHDLVAKGFXXXXXXXXXXXX 1680
RPLFIV+KQRL+IKKKDI+ LQQRESP++ G WHDLVAKG+
Sbjct: 625 RPLFIVEKQRLMIKKKDIQTLQQRESPDEGG--------WHDLVAKGYIEYIDTEEEETT 676
Query: 1679 XXXXXINDLVSAREKPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 1500
INDLV AR P +AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 677 MISMTINDLVQARLNPGDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 736
Query: 1499 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 1320
KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAI+CYSGYN
Sbjct: 737 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAISCYSGYN 796
Query: 1319 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLD 1140
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR +TMGMRHGSYDKLD
Sbjct: 797 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRASTMGMRHGSYDKLD 856
Query: 1139 DDGLAPPGTRVSGEDVIIGKTSPMAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 960
DDGLAPPGTRVSGEDVIIGKT+P++ D+AQGQA+RYT++DHSTSLRHSETGMVDQVLLTT
Sbjct: 857 DDGLAPPGTRVSGEDVIIGKTTPISQDDAQGQASRYTRKDHSTSLRHSETGMVDQVLLTT 916
Query: 959 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHA 780
NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHA
Sbjct: 917 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 976
Query: 779 IPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 600
IPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 977 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1036
Query: 599 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 420
TGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1037 TGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1096
Query: 419 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 240
CMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP
Sbjct: 1097 CMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 1156
Query: 239 YACKLLFQELMAMAIAPRMLTKDIKLNKEQKKKGA 135
YACKLLFQELMAMAIAPRMLTKD+KL K+QKKKGA
Sbjct: 1157 YACKLLFQELMAMAIAPRMLTKDVKLAKDQKKKGA 1191
>ref|XP_003533774.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB2-like [Glycine
max]
Length = 1192
Score = 2209 bits (5725), Expect = 0.0
Identities = 1098/1175 (93%), Positives = 1123/1175 (95%)
Frame = -3
Query: 3659 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQPDFAETI 3480
AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQ DFAETI
Sbjct: 28 AWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDESADIEIRPESQHNPGHQSDFAETI 87
Query: 3479 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEVT 3300
YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDV+KRVIKKGHDGEEVT
Sbjct: 88 YKISFGQIYLSKPMMTESDGETATLFPKAARLRNLTYSAPLYVDVSKRVIKKGHDGEEVT 147
Query: 3299 ETQDFTKVFIGKVPIMLRSSYCTLYQNTEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 3120
E QDFTKVFIGKVPIMLRSSYCTLYQN+EKDLTELGECPYDQGGYFIINGSEKVLIAQEK
Sbjct: 148 EAQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPYDQGGYFIINGSEKVLIAQEK 207
Query: 3119 MSTNHVYVFKKRQPNKYAYVAEVRSMAETQNRPPSTMFVRMLSRTSAKGGSSGQYIRATL 2940
MSTNHVYVFKKRQPNKYAYVAEVRSMAE+QNRPPSTMFVRMLSRTS+KGGSSGQYIRATL
Sbjct: 208 MSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPSTMFVRMLSRTSSKGGSSGQYIRATL 267
Query: 2939 PYIRTEIPIIIVFRALGFVADKDILEHICYNFQDTQMMELLRPSLEEAFVIQNQQVALDY 2760
PYIRTEIPIIIVFRALGFVADKDILEHICY+F TQMMELLRPSLEEAFVIQNQQVALDY
Sbjct: 268 PYIRTEIPIIIVFRALGFVADKDILEHICYDFSYTQMMELLRPSLEEAFVIQNQQVALDY 327
Query: 2759 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 2580
IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR
Sbjct: 328 IGKRGATVGVTKEKRIKYAKEILQKEMLPHVGVGEYCETKKAYYFGYIIHRLLLCALGRR 387
Query: 2579 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQKCVDNGKDVNLQFAIKAKTI 2400
AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR YVQKCVDNGKDVNLQFAIKAKTI
Sbjct: 388 AEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNGKDVNLQFAIKAKTI 447
Query: 2399 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 2220
TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL
Sbjct: 448 TSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYASTLSHLRRLNSPIGREGKLAKPRQL 507
Query: 2219 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 2040
HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI
Sbjct: 508 HNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAAYPILEFLEEWGTENFEEISPAVI 567
Query: 2039 PQATKIFVNGCWVGIHRNPDMLVSTXXXXXXRVDVNTEVGVVRDIRLKELRIYTDYGRCS 1860
PQATKIFVNGCW+GIHR+PDMLV T RVDVNTEVGVVRDIRLKELRIYTDYGRCS
Sbjct: 568 PQATKIFVNGCWMGIHRDPDMLVRTLKKLRRRVDVNTEVGVVRDIRLKELRIYTDYGRCS 627
Query: 1859 RPLFIVDKQRLLIKKKDIRALQQRESPEDDGTVXXXXXGWHDLVAKGFXXXXXXXXXXXX 1680
RPLFIVDKQRLLIKKKDI ALQQRESPED G WHDLV+KGF
Sbjct: 628 RPLFIVDKQRLLIKKKDIHALQQRESPEDGG--------WHDLVSKGFIEYIDTEEEETT 679
Query: 1679 XXXXXINDLVSAREKPEEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 1500
INDLV AR PE+AYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG
Sbjct: 680 MISMTINDLVQARINPEDAYSDTYTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMG 739
Query: 1499 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVAIACYSGYN 1320
KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIV+IACYSGYN
Sbjct: 740 KQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINAIVSIACYSGYN 799
Query: 1319 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRTNTMGMRHGSYDKLD 1140
QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR NTMGMRHGSYDKLD
Sbjct: 800 QEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDRANTMGMRHGSYDKLD 859
Query: 1139 DDGLAPPGTRVSGEDVIIGKTSPMAPDEAQGQAARYTKRDHSTSLRHSETGMVDQVLLTT 960
DDGLAPPGTRVSGEDVIIGKT+P++ +EAQGQA RYT+RDHS SLRHSETG+VDQVLLTT
Sbjct: 860 DDGLAPPGTRVSGEDVIIGKTTPISQEEAQGQALRYTRRDHSISLRHSETGIVDQVLLTT 919
Query: 959 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTLEGICPDIIVNPHA 780
NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWT+EGI PDIIVNPHA
Sbjct: 920 NADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHA 979
Query: 779 IPSRMTIGQLIECVMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 600
IPSRMTIGQLIEC+MGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH
Sbjct: 980 IPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQMRGFETMYNGH 1039
Query: 599 TGRRLTSMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 420
TGRRL++MIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD
Sbjct: 1040 TGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERD 1099
Query: 419 CMIAHGAAHFLKERLFDQSDAYRIHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVHIP 240
CMIAHGAAHFLKERLFDQSDAYR+HVCERCGLIAIANLKKNSFECRGCKNKTDIVQV+IP
Sbjct: 1100 CMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNSFECRGCKNKTDIVQVYIP 1159
Query: 239 YACKLLFQELMAMAIAPRMLTKDIKLNKEQKKKGA 135
YACKLLFQELMAMAIAPRMLTK++K + KKGA
Sbjct: 1160 YACKLLFQELMAMAIAPRMLTKEVKTTNQ--KKGA 1192