BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Scutellaria22_contig00002276
         (4041 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 ...  1237   0.0  
ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinu...  1197   0.0  
ref|XP_004146280.1| PREDICTED: ATP-dependent RNA helicase Dhx29-...  1190   0.0  
ref|XP_002888226.1| helicase domain-containing protein [Arabidop...  1185   0.0  
ref|NP_176103.2| helicase associated domain-containing protein [...  1179   0.0  

>ref|XP_002263889.1| PREDICTED: ATP-dependent RNA helicase DHX29 [Vitis vinifera]
            gi|297739540|emb|CBI29722.3| unnamed protein product
            [Vitis vinifera]
          Length = 1458

 Score = 1237 bits (3200), Expect = 0.0
 Identities = 624/873 (71%), Positives = 731/873 (83%), Gaps = 19/873 (2%)
 Frame = +3

Query: 1098 KHAESVHLKMAQQRKKETRKYKEMLETRSSLPIAALKDDILRSLEENSVVVISGETGCGK 1277
            K AES +LK   + K +  KYK+ML+TRS LPIA LK +IL+ L+E SV+V+ GETG GK
Sbjct: 584  KEAESSYLKQEYENKMKIGKYKDMLKTRSGLPIAELKSEILQVLKEKSVLVVCGETGSGK 643

Query: 1278 TTQVPQYILDNMIEAGFGGYCNVVCTQPRRIAATSVAERVADERCESYPGSNDSLVGYQV 1457
            TTQVPQ+ILD+MIEAG GGYCN++CTQPRRIAA SVAERVADERCE  PGS+ S+VGYQV
Sbjct: 644  TTQVPQFILDDMIEAGNGGYCNIICTQPRRIAAISVAERVADERCEPSPGSDGSVVGYQV 703

Query: 1458 RLDSARSERTKLLFCTTGILLRMISGNKDLTDISHVIVDEVHERSLLGDFLLIVLKNLID 1637
            RLDSA + RTKLLFCTTGILLR ++G+K+L+ I+HVIVDEVHERSLLGDFLLIVLKNLI+
Sbjct: 704  RLDSASNVRTKLLFCTTGILLRKLAGDKNLSGITHVIVDEVHERSLLGDFLLIVLKNLIE 763

Query: 1638 KQQRSRGKSKLKVILMSATVDSYMFSKYFGNCPVVTAQGRTHPVSTQYLEDIYENLNYRL 1817
            KQ       KLKVILMSATVDS +FS+YFG CPV+TA GRTHPVST +LEDIYE+++YRL
Sbjct: 764  KQSTD-STPKLKVILMSATVDSNLFSRYFGGCPVITAVGRTHPVSTYFLEDIYESIDYRL 822

Query: 1818 ASDSPASIDYGVSGTEKSAPVGNRRGKKNLVLSGWGDESLLSEEIINPYYDKSDYLNYSE 1997
            ASDSPASI Y  S  +K++ V NRRGK+NLVLS WGD+S+LSEE INPYY  + Y +YSE
Sbjct: 823  ASDSPASIRYETSIKQKTSAVNNRRGKRNLVLSAWGDDSVLSEECINPYYVPNAYQSYSE 882

Query: 1998 QTRQNLKRLNEXXXXXXXXXXXVCHIDETYAEGAILVFLPGVAEINMLLDKLAASRRFGG 2177
            +T+QNLKRLNE           VC++DETY  GAILVFLPGVAEI MLLDKLAAS RF G
Sbjct: 883  KTQQNLKRLNEDVIDYDLLEDLVCYVDETYPAGAILVFLPGVAEIYMLLDKLAASYRFRG 942

Query: 2178 HSSEWLLPLHSSIAHEDQKKVFQKPPDNIRKVIVATNIAETSITIDDIVYVVDCGKHKEN 2357
             SS+WLLPLHSSIA +DQ+KVF +PP+NIRKVI+ATNIAETSITIDD+VYV+DCGKHKEN
Sbjct: 943  LSSDWLLPLHSSIASDDQRKVFLQPPENIRKVIIATNIAETSITIDDVVYVIDCGKHKEN 1002

Query: 2358 RYNPHKKLSSMVEDWISXXXXXXXXXXXXXVKPGICFCLYTKHRYEKLMRPYQIPEMMRM 2537
            RYNP KKLSSMVEDWIS             VKPGICF LYT +R+EKL+RP+Q+PEM+RM
Sbjct: 1003 RYNPQKKLSSMVEDWISQANAKQRRGRAGRVKPGICFSLYTHYRFEKLLRPFQVPEMLRM 1062

Query: 2538 PLVELCLQVKLLSLGSIKQFLSKALEPPKEEAITSAVSLLYEVGAIEGDEELTPLGYHLA 2717
            PLVELCLQ+KLLSLG+IK FLSKALEPP EEA+TSA+S+LYEVGAIEGDEELTPLG+HLA
Sbjct: 1063 PLVELCLQIKLLSLGNIKPFLSKALEPPTEEAMTSAISVLYEVGAIEGDEELTPLGHHLA 1122

Query: 2718 KLPVDVLIGKMMLYGGIFGCLSPILTISAFLSYKSPFVYPKDEREGVERAKLALLGDQTG 2897
            KLPVDVLIGKMMLYG IFGCLSPIL+ISAFLSYKSPF+ PKDER+ VERAKLALL DQ  
Sbjct: 1123 KLPVDVLIGKMMLYGAIFGCLSPILSISAFLSYKSPFLSPKDERQNVERAKLALLTDQVD 1182

Query: 2898 DATVAS--SRQSDHLLMMVAYQKWDKMLHMEGVKAAQRFCSSHFLSSSVMYMIRDMRIQF 3071
             A+ ++  +RQSDHL+MMVAY+KW+++LH +G KAAQ FC+S+FLSSSVM+MIRDMR+QF
Sbjct: 1183 GASDSNDGARQSDHLVMMVAYKKWERILHEKGAKAAQHFCNSYFLSSSVMHMIRDMRVQF 1242

Query: 3072 GTLLADIGLINIP---QVGWKKKEKLENWLSDSSQPFNQYSHHSALLKAILCAGLYPNVA 3242
            G LLADIGLI++P   Q+  KKKE L +W SD SQPFN YSHH +++KAILCAGLYPNVA
Sbjct: 1243 GNLLADIGLISLPKKYQIERKKKENLNSWFSDISQPFNTYSHHFSIVKAILCAGLYPNVA 1302

Query: 3243 TTLEG------GN--------TGNRPVWHDGKREVYIHPSSVNSSQKAFQYPFLVFLEKV 3380
             T +G      GN        T  RPVW+DG+REV+IHPSS+N +  AFQYPFLVFLEKV
Sbjct: 1303 ATEQGIAGVALGNIIQSSGSATKGRPVWYDGRREVHIHPSSINGNLNAFQYPFLVFLEKV 1362

Query: 3381 ETTKVFLRDTTIVSPFSILLFGGSINVQHQTGLIIVDNWLNMAAPAQTAVLFKELRFTLH 3560
            ET KVFLRDTTI+SP+SILLFGGSINVQHQ+G++ +D WL +AAPAQ AVLFKELR TLH
Sbjct: 1363 ETNKVFLRDTTIISPYSILLFGGSINVQHQSGMVNIDGWLKLAAPAQIAVLFKELRVTLH 1422

Query: 3561 SILKELISKPQNAVTINNEVIRSIIHLFLEEDK 3659
            S+LKELI KP+ A+ +NNEV++SIIHL LEE+K
Sbjct: 1423 SVLKELIRKPEKAIVVNNEVVKSIIHLLLEEEK 1455



 Score =  184 bits (467), Expect = 2e-43
 Identities = 93/163 (57%), Positives = 116/163 (71%), Gaps = 1/163 (0%)
 Frame = +3

Query: 3   GDPKKIPKAVLHQLCQKSGWEAPKYDKVPXXXXXXXXXXXVLRKASGRGKSRKAGGLTTI 182
           GDP+KIPKAVLHQLCQ+SGWEAPK +KV            VLRK++GRGKSRKAGGLTT+
Sbjct: 403 GDPQKIPKAVLHQLCQRSGWEAPKLNKVLGKENGFCYAVSVLRKSTGRGKSRKAGGLTTL 462

Query: 183 QLPSPDESLNT-EDAQNRVAVYALHCLFPDLPVHFALSEPYASLLLKWKEGELLTTVTDK 359
           +LP   E+  + EDAQN VA YAL+ LFPDLP+H A++EPYAS +++WKEGE    + D 
Sbjct: 463 ELPDQLEAFESAEDAQNAVAAYALYQLFPDLPIHLAITEPYASFVIQWKEGESSIRIEDS 522

Query: 360 PEDRRAGFVDSLLNADKSEHAVETDLIDTSHQKMIQIPHIVEH 488
            EDRRAGFV+S+L+A  S      D+ D S  K  Q+P I E+
Sbjct: 523 EEDRRAGFVNSILDAGDSGSTAFVDVTDNSLPKKFQMPQIEEN 565


>ref|XP_002528999.1| ATP-dependent RNA helicase, putative [Ricinus communis]
            gi|223531539|gb|EEF33369.1| ATP-dependent RNA helicase,
            putative [Ricinus communis]
          Length = 1509

 Score = 1197 bits (3098), Expect = 0.0
 Identities = 595/857 (69%), Positives = 714/857 (83%), Gaps = 19/857 (2%)
 Frame = +3

Query: 1107 ESVHLKMAQQRKKETRKYKEMLETRSSLPIAALKDDILRSLEENSVVVISGETGCGKTTQ 1286
            E+ +L+  Q++KK   KY+E+L+TR +LPIA LK++IL+ L+EN+ +V+ GETG GKTTQ
Sbjct: 586  ENSYLRQEQEKKKNVLKYREILKTRGALPIAGLKNEILQMLKENNCLVVCGETGSGKTTQ 645

Query: 1287 VPQYILDNMIEAGFGGYCNVVCTQPRRIAATSVAERVADERCESYPGSNDSLVGYQVRLD 1466
            VPQ+ILD+MIE+G GG CN++CTQPRRIAA SVAERVA ER E  PGS  SLVGYQVRLD
Sbjct: 646  VPQFILDDMIESGRGGQCNIICTQPRRIAAISVAERVAYERYEPPPGSGGSLVGYQVRLD 705

Query: 1467 SARSERTKLLFCTTGILLRMISGNKDLTDISHVIVDEVHERSLLGDFLLIVLKNLIDKQQ 1646
            SAR+ERTKLLFCTTGILLR ++G+++L+ I+HVIVDEVHERSLLGDFLLIVLK+L++KQ 
Sbjct: 706  SARNERTKLLFCTTGILLRRLAGDRNLSGITHVIVDEVHERSLLGDFLLIVLKSLLEKQS 765

Query: 1647 RSRGKSKLKVILMSATVDSYMFSKYFGNCPVVTAQGRTHPVSTQYLEDIYENLNYRLASD 1826
              +G  KLKVILMSATVDS +FS YFG+CPV++AQGRTHPV+T +LEDIYE+++Y LASD
Sbjct: 766  -DQGTPKLKVILMSATVDSTLFSNYFGHCPVLSAQGRTHPVTTYFLEDIYESIDYHLASD 824

Query: 1827 SPASIDYGVSGTEKSAPVGNRRGKKNLVLSGWGDESLLSEEIINPYYDKSDYLNYSEQTR 2006
            SPA++    S   KS PV +RRGKKNLVLSGWGD+SLLSEEIINP++  S+Y +YSEQT+
Sbjct: 825  SPAALGLQTSTIAKSGPVNDRRGKKNLVLSGWGDDSLLSEEIINPHFVSSNYQSYSEQTQ 884

Query: 2007 QNLKRLNEXXXXXXXXXXXVCHIDETYAEGAILVFLPGVAEINMLLDKLAASRRFGGHSS 2186
            +NLKRL+E           + H+D+TY EGAILVFLPG++EI+MLLD+L AS RFGG SS
Sbjct: 885  KNLKRLDEDIIDYDLLEDLIFHVDQTYGEGAILVFLPGMSEIHMLLDRLVASYRFGGPSS 944

Query: 2187 EWLLPLHSSIAHEDQKKVFQKPPDNIRKVIVATNIAETSITIDDIVYVVDCGKHKENRYN 2366
             W+LPLHSSIA  DQKKVF +PP+NIRKVI+ATNIAETSITIDD+VYV+DCGKHKENRYN
Sbjct: 945  NWVLPLHSSIASTDQKKVFLRPPENIRKVIIATNIAETSITIDDVVYVIDCGKHKENRYN 1004

Query: 2367 PHKKLSSMVEDWISXXXXXXXXXXXXXVKPGICFCLYTKHRYEKLMRPYQIPEMMRMPLV 2546
            P KKL+SMVEDWIS             VKPGICFCLYT HR++KLMRPYQ+PEM+RMPLV
Sbjct: 1005 PQKKLTSMVEDWISQANARQRRGRAGRVKPGICFCLYTCHRFKKLMRPYQVPEMLRMPLV 1064

Query: 2547 ELCLQVKLLSLGSIKQFLSKALEPPKEEAITSAVSLLYEVGAIEGDEELTPLGYHLAKLP 2726
            ELCLQ+K+LSLG IK FLSKALEPP++EA+TSA+SLLYEVGAIEGDEELTPLG+HLAKLP
Sbjct: 1065 ELCLQIKILSLGHIKPFLSKALEPPRDEAMTSAISLLYEVGAIEGDEELTPLGHHLAKLP 1124

Query: 2727 VDVLIGKMMLYGGIFGCLSPILTISAFLSYKSPFVYPKDEREGVERAKLALLGDQTGDAT 2906
            VD+LIGKMMLYG IFGCLSPIL+ISAFLSYKSPF+YPKDE++ VERAKLALL D+   + 
Sbjct: 1125 VDLLIGKMMLYGAIFGCLSPILSISAFLSYKSPFMYPKDEKQNVERAKLALLTDKVDGSN 1184

Query: 2907 VAS--SRQSDHLLMMVAYQKWDKMLHMEGVKAAQRFCSSHFLSSSVMYMIRDMRIQFGTL 3080
              +   RQSDH++MMVAY+KWD +LH +GVKAAQ+FCS++FLS+SVM+MIRDMRIQFGTL
Sbjct: 1185 DLNHGDRQSDHIIMMVAYKKWDNILHEKGVKAAQQFCSTYFLSNSVMHMIRDMRIQFGTL 1244

Query: 3081 LADIGLINIP---QVGWKKKEKLENWLSDSSQPFNQYSHHSALLKAILCAGLYPNVATTL 3251
            LADIG IN+P   Q+  + KEK + WLSD SQPFN YSHHS+++KAILCAGLYPNVA T 
Sbjct: 1245 LADIGFINLPQNYQILGRNKEKFDGWLSDKSQPFNTYSHHSSIVKAILCAGLYPNVAATQ 1304

Query: 3252 EG--------------GNTGNRPVWHDGKREVYIHPSSVNSSQKAFQYPFLVFLEKVETT 3389
            +G                    PVW+DG+REV+IHPSS+NS  KAFQ+PFLVFLEKVET 
Sbjct: 1305 QGIIATAINSLKQSTIPAIKGYPVWYDGRREVHIHPSSINSKVKAFQHPFLVFLEKVETN 1364

Query: 3390 KVFLRDTTIVSPFSILLFGGSINVQHQTGLIIVDNWLNMAAPAQTAVLFKELRFTLHSIL 3569
            KVFLRDTTI+SPFSILLFGG INVQHQTGL+ VD WL + APAQ AVLFKE R  +HS+L
Sbjct: 1365 KVFLRDTTIISPFSILLFGGFINVQHQTGLVTVDGWLKLTAPAQYAVLFKEFRSAMHSLL 1424

Query: 3570 KELISKPQNAVTINNEV 3620
            KEL+ KP+NA  ++NE+
Sbjct: 1425 KELVQKPKNAAIVDNEM 1441



 Score =  184 bits (467), Expect = 2e-43
 Identities = 92/138 (66%), Positives = 107/138 (77%), Gaps = 1/138 (0%)
 Frame = +3

Query: 3   GDPKKIPKAVLHQLCQKSGWEAPKYDKVPXXXXXXXXXXXVLRKASGRGKSRKAGGLTTI 182
           GDPKKIPKAVLHQLCQKSGWEAPK+ KV            +LRKASGRGKSRKAGGL T+
Sbjct: 405 GDPKKIPKAVLHQLCQKSGWEAPKFKKVHERRKGFSYSVSILRKASGRGKSRKAGGLITL 464

Query: 183 QLPSPDESL-NTEDAQNRVAVYALHCLFPDLPVHFALSEPYASLLLKWKEGELLTTVTDK 359
           QLP  DE+  + EDAQNR+A +ALH LFPDLPVH  +S+PY SL+L+WKEGE  + V + 
Sbjct: 465 QLPDQDETYESAEDAQNRIAAFALHQLFPDLPVHLIVSDPYDSLILQWKEGESSSKVENT 524

Query: 360 PEDRRAGFVDSLLNADKS 413
            +DRRAGFVD LLNAD+S
Sbjct: 525 VDDRRAGFVDWLLNADES 542


>ref|XP_004146280.1| PREDICTED: ATP-dependent RNA helicase Dhx29-like [Cucumis sativus]
          Length = 1642

 Score = 1190 bits (3078), Expect = 0.0
 Identities = 590/875 (67%), Positives = 712/875 (81%), Gaps = 19/875 (2%)
 Frame = +3

Query: 1095 NKHAESVHLKMAQQRKKETRKYKEMLETRSSLPIAALKDDILRSLEENSVVVISGETGCG 1274
            N   ES  L++  + K  T+KY+EML+ R++LPIA+L+ D+LR L+EN+V+V+ G+TG G
Sbjct: 767  NTQNESSRLRLEHENKMRTKKYQEMLKNRAALPIASLRGDMLRLLKENNVLVVCGDTGSG 826

Query: 1275 KTTQVPQYILDNMIEAGFGGYCNVVCTQPRRIAATSVAERVADERCESYPGSNDSLVGYQ 1454
            KTTQVPQ+ILD MIE+G GG CN+VCTQPRRIAA SVAERV+DERCE  PGSN SLVGY 
Sbjct: 827  KTTQVPQFILDEMIESGCGGLCNIVCTQPRRIAAISVAERVSDERCEPAPGSNGSLVGYH 886

Query: 1455 VRLDSARSERTKLLFCTTGILLRMISGNKDLTDISHVIVDEVHERSLLGDFLLIVLKNLI 1634
            VRLD+AR+E TKLLFCTTGILLR I G++ LT I+H+IVDEVHERSLLGDFLL+VLKNLI
Sbjct: 887  VRLDNARNENTKLLFCTTGILLRKIVGDETLTGITHIIVDEVHERSLLGDFLLVVLKNLI 946

Query: 1635 DKQQRSRGKSKLKVILMSATVDSYMFSKYFGNCPVVTAQGRTHPVSTQYLEDIYENLNYR 1814
            +K+      S LKV+LMSATVDS +FS YFGNCPV+TA+GR HPV+T +LEDIYE+  Y 
Sbjct: 947  EKRS-VESSSPLKVVLMSATVDSNLFSGYFGNCPVITAEGRMHPVTTYFLEDIYESTGYH 1005

Query: 1815 LASDSPASIDYGVSGTEKSAPVGNRRGKKNLVLSGWGDESLLSEEIINPYYDKSDYLNYS 1994
            LASDSPA++ Y VS  +K+APV  RRGKKNL+LSGWGD++LLSE   NPYY+   Y +YS
Sbjct: 1006 LASDSPAAVRYEVSSGKKNAPVNYRRGKKNLILSGWGDDALLSEACTNPYYNSDCYQSYS 1065

Query: 1995 EQTRQNLKRLNEXXXXXXXXXXXVCHIDETYAEGAILVFLPGVAEINMLLDKLAASRRFG 2174
            E T++NL+RLNE           V H+D+T+ EGAILVFLPGV+EI++L D+LAAS +FG
Sbjct: 1066 ELTQKNLERLNEHIIDYDLLEDLVIHVDKTFDEGAILVFLPGVSEIHLLYDRLAASYQFG 1125

Query: 2175 GHSSEWLLPLHSSIAHEDQKKVFQKPPDNIRKVIVATNIAETSITIDDIVYVVDCGKHKE 2354
            G +S+W+LPLHSSIA  DQKKVF +PP  IRKVI+ATNIAETSITIDD+VYV+D G+HKE
Sbjct: 1126 GQASDWILPLHSSIASTDQKKVFLRPPYGIRKVIIATNIAETSITIDDVVYVIDSGRHKE 1185

Query: 2355 NRYNPHKKLSSMVEDWISXXXXXXXXXXXXXVKPGICFCLYTKHRYEKLMRPYQIPEMMR 2534
            NRYNP KKLSSMVEDWIS             V+PG CFCLYT HRYEKLMRP+Q+PEM+R
Sbjct: 1186 NRYNPQKKLSSMVEDWISQANARQRRGRAGRVRPGTCFCLYTHHRYEKLMRPFQVPEMLR 1245

Query: 2535 MPLVELCLQVKLLSLGSIKQFLSKALEPPKEEAITSAVSLLYEVGAIEGDEELTPLGYHL 2714
            MPLVELCLQ+KLLSLG I+ FLSKALEPP+EEA+ SA+SLLYEVGA+EG+EELTPLG HL
Sbjct: 1246 MPLVELCLQIKLLSLGYIRPFLSKALEPPREEAMASAISLLYEVGALEGNEELTPLGQHL 1305

Query: 2715 AKLPVDVLIGKMMLYGGIFGCLSPILTISAFLSYKSPFVYPKDEREGVERAKLALLGDQT 2894
            AKLPVDVLIGKMMLYGGIFGCLS IL+ISAFLSYKSPF+YPKDE++ VERAK ALL D+ 
Sbjct: 1306 AKLPVDVLIGKMMLYGGIFGCLSSILSISAFLSYKSPFIYPKDEKQNVERAKSALLSDEG 1365

Query: 2895 GDA--TVASSRQSDHLLMMVAYQKWDKMLHMEGVKAAQRFCSSHFLSSSVMYMIRDMRIQ 3068
              +  +  + +QSDHL+M+ AY+KW+K+LH +G KAAQ+FC SHFLSSSVMYMIRDMR+Q
Sbjct: 1366 NGSGESCGNDKQSDHLIMVNAYKKWEKILHQKGAKAAQQFCKSHFLSSSVMYMIRDMRVQ 1425

Query: 3069 FGTLLADIGLINIP---QVGWKKKEKLENWLSDSSQPFNQYSHHSALLKAILCAGLYPNV 3239
            FGTLLADIGL+++P     G   KE L++W SDSSQPFN YS H +++KA+LCAGLYPN+
Sbjct: 1426 FGTLLADIGLVDLPIRSCFGRTTKEDLDSWFSDSSQPFNMYSDHPSIVKAVLCAGLYPNI 1485

Query: 3240 ATTLE--------------GGNTGNRPVWHDGKREVYIHPSSVNSSQKAFQYPFLVFLEK 3377
            A   E              G  T  RPV +DG+REVYIHPSSVNS+ KAFQYPF VFLEK
Sbjct: 1486 AAGEEGITEAALNSLGRSFGPATTARPVLYDGRREVYIHPSSVNSNLKAFQYPFHVFLEK 1545

Query: 3378 VETTKVFLRDTTIVSPFSILLFGGSINVQHQTGLIIVDNWLNMAAPAQTAVLFKELRFTL 3557
            VET KVF+RDT++VSP+SILLFGGSIN+QHQ+G++I+D WL + APAQ AVLFKELR TL
Sbjct: 1546 VETNKVFIRDTSVVSPYSILLFGGSINIQHQSGIVIIDGWLKLTAPAQIAVLFKELRLTL 1605

Query: 3558 HSILKELISKPQNAVTINNEVIRSIIHLFLEEDKP 3662
            HSILKELI +P+ ++ I NEV++SI+ L LEEDKP
Sbjct: 1606 HSILKELIRRPETSIIIKNEVLKSIVRLLLEEDKP 1640



 Score =  167 bits (424), Expect = 2e-38
 Identities = 86/144 (59%), Positives = 104/144 (72%), Gaps = 1/144 (0%)
 Frame = +3

Query: 3   GDPKKIPKAVLHQLCQKSGWEAPKYDKVPXXXXXXXXXXXVLRKASGRGKSRKAGGLTTI 182
           GD  KIPKAVLHQLCQK GW+APK++K+            VLRKASGRGK+RKAGGL T+
Sbjct: 432 GDTLKIPKAVLHQLCQKEGWDAPKFNKIHRKENGFFYAVSVLRKASGRGKNRKAGGLITL 491

Query: 183 QLPSPDESL-NTEDAQNRVAVYALHCLFPDLPVHFALSEPYASLLLKWKEGELLTTVTDK 359
           Q P+ DE   + EDAQN+VA +AL  LFPDLPVH AL EPYASL+++WK GE ++ V D 
Sbjct: 492 QFPNEDEIFESAEDAQNKVAAFALCHLFPDLPVHVALIEPYASLVMQWKAGESISKVDDD 551

Query: 360 PEDRRAGFVDSLLNADKSEHAVET 431
            +DRRA FVDSLL+A     A +T
Sbjct: 552 EKDRRASFVDSLLDASNIGSASKT 575


>ref|XP_002888226.1| helicase domain-containing protein [Arabidopsis lyrata subsp. lyrata]
            gi|297334067|gb|EFH64485.1| helicase domain-containing
            protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1458

 Score = 1185 bits (3065), Expect = 0.0
 Identities = 586/871 (67%), Positives = 712/871 (81%), Gaps = 18/871 (2%)
 Frame = +3

Query: 1104 AESVHLKMAQQRKKETRKYKEMLETRSSLPIAALKDDILRSLEENSVVVISGETGCGKTT 1283
            AE + L+  Q+ KK T+KYK+ML+TR++LPI+ +K+ IL+ L+E  V+V+ GETG GKTT
Sbjct: 585  AECLSLQRKQENKKRTQKYKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTT 644

Query: 1284 QVPQYILDNMIEAGFGGYCNVVCTQPRRIAATSVAERVADERCESYPGSNDSLVGYQVRL 1463
            QVPQ+ILD+MI++G GGYCN++CTQPRRIAA SVA+RVADERCES PGS+DSLVGYQVRL
Sbjct: 645  QVPQFILDDMIDSGHGGYCNIICTQPRRIAAISVAQRVADERCESSPGSDDSLVGYQVRL 704

Query: 1464 DSARSERTKLLFCTTGILLRMISGNKDLTDISHVIVDEVHERSLLGDFLLIVLKNLIDKQ 1643
            +SARS++T+LLFCTTGILLR ++G+K L D++H+IVDEVHERSLLGDFLLI+LK LI+KQ
Sbjct: 705  ESARSDKTRLLFCTTGILLRKLAGDKTLNDVTHIIVDEVHERSLLGDFLLIILKTLIEKQ 764

Query: 1644 QRSRGKSKLKVILMSATVDSYMFSKYFGNCPVVTAQGRTHPVSTQYLEDIYENLNYRLAS 1823
                   KLKVILMSATVD+ +FS+YFG+CPV+TAQGRTHPV+T +LE+IYE++NY LA 
Sbjct: 765  SCDNTSRKLKVILMSATVDADLFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAP 824

Query: 1824 DSPASIDYGVSGTEKSAPVGNRRGKKNLVLSGWGDESLLSEEIINPYYDKSDYLNYSEQT 2003
            DSPA++    S  EK   V +RRGKKNLVL+GWGD+ LLSE+ +NP+Y  S+Y +YS+QT
Sbjct: 825  DSPAALRSDSSIKEKLGSVNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQT 884

Query: 2004 RQNLKRLNEXXXXXXXXXXXVCHIDETYAEGAILVFLPGVAEINMLLDKLAASRRFGGHS 2183
            +QNLKRLNE           +CHID+T  EGAIL+FLPGV+EI MLLD++AAS RF G +
Sbjct: 885  QQNLKRLNEDRIDYELLEELICHIDDTCEEGAILIFLPGVSEIYMLLDRIAASYRFRGPA 944

Query: 2184 SEWLLPLHSSIAHEDQKKVFQKPPDNIRKVIVATNIAETSITIDDIVYVVDCGKHKENRY 2363
            ++WLLPLHSSIA  +Q+KVF +PP  IRKVI ATNIAETSITIDD+VYV+D GKHKENRY
Sbjct: 945  ADWLLPLHSSIASTEQRKVFLRPPKGIRKVIAATNIAETSITIDDVVYVIDSGKHKENRY 1004

Query: 2364 NPHKKLSSMVEDWISXXXXXXXXXXXXXVKPGICFCLYTKHRYEKLMRPYQIPEMMRMPL 2543
            NP KKLSSMVEDWIS             VKPGICF LYT++R+EKLMRPYQ+PEM+RMPL
Sbjct: 1005 NPQKKLSSMVEDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPL 1064

Query: 2544 VELCLQVKLLSLGSIKQFLSKALEPPKEEAITSAVSLLYEVGAIEGDEELTPLGYHLAKL 2723
            VELCLQ+KLL LG IK FLSKALEPP E A+TSA+SLL+EVGA+EGDEELTPLG+HLAKL
Sbjct: 1065 VELCLQIKLLGLGHIKPFLSKALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKL 1124

Query: 2724 PVDVLIGKMMLYGGIFGCLSPILTISAFLSYKSPFVYPKDEREGVERAKLALLGDQTGDA 2903
            PVDVLIGKM+LYGGIFGCLSPIL+I+AFLSYKSPF+YPKDE++ V+R KLALL D  G +
Sbjct: 1125 PVDVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYPKDEKQNVDRVKLALLSDNLGSS 1184

Query: 2904 TVASS--RQSDHLLMMVAYQKWDKMLHMEGVKAAQRFCSSHFLSSSVMYMIRDMRIQFGT 3077
            +  ++  RQSDHLLMMVAY KW K+L   G+ AAQRFC S FLSSSVM MIRDMR+QFGT
Sbjct: 1185 SDLNNNDRQSDHLLMMVAYDKWVKILQERGMNAAQRFCESKFLSSSVMRMIRDMRVQFGT 1244

Query: 3078 LLADIGLINIPQVG---WKKKEKLENWLSDSSQPFNQYSHHSALLKAILCAGLYPNVAT- 3245
            LLADIGLIN+P+ G    +KKE L+ W SD +QPFN YS    ++KAILCAGLYPN+A  
Sbjct: 1245 LLADIGLINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLYPNIAAN 1304

Query: 3246 ------------TLEGGNTGNRPVWHDGKREVYIHPSSVNSSQKAFQYPFLVFLEKVETT 3389
                        T +G  T +   W+DG+REV+IHPSS+NS+ KAFQYPFLVFLEKVET 
Sbjct: 1305 DKGITETAFNSLTKQGNQTKSYSAWYDGRREVHIHPSSINSNFKAFQYPFLVFLEKVETN 1364

Query: 3390 KVFLRDTTIVSPFSILLFGGSINVQHQTGLIIVDNWLNMAAPAQTAVLFKELRFTLHSIL 3569
            KV+LRDTT+VSPFSILLFGGSINV HQ+G + +D WL +AAPAQTAVLFKELR TLHSIL
Sbjct: 1365 KVYLRDTTVVSPFSILLFGGSINVHHQSGSVTIDGWLKVAAPAQTAVLFKELRLTLHSIL 1424

Query: 3570 KELISKPQNAVTINNEVIRSIIHLFLEEDKP 3662
            K+LI KP+ +  ++NEVI+S++ L +EE KP
Sbjct: 1425 KDLIRKPEKSGIVHNEVIKSMVDLLIEEGKP 1455



 Score =  173 bits (439), Expect = 3e-40
 Identities = 86/150 (57%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
 Frame = +3

Query: 3   GDPKKIPKAVLHQLCQKSGWEAPKYDKVPXXXXXXXXXXXVLRKASGRGKSRKAGGLTTI 182
           GD +KIPKA LHQLCQ+SGWEAPK++KV            +LRKASGRGK+R+AGGL T+
Sbjct: 405 GDAQKIPKAFLHQLCQRSGWEAPKFNKVTGEERNFSYAVSILRKASGRGKNRQAGGLVTL 464

Query: 183 QLPSPDESLNT-EDAQNRVAVYALHCLFPDLPVHFALSEPYASLLLKWKEGELLTTVTDK 359
           QLP  D++  + EDAQN+VA +ALH LF DLPVHFA++EPYASL+L WK+ ELL T+   
Sbjct: 465 QLPLKDDNFESIEDAQNKVAAFALHKLFSDLPVHFAITEPYASLVLNWKQEELLCTIQST 524

Query: 360 PEDRRAGFVDSLLNADKSEHAVETDLIDTS 449
            EDRRA FVD LL  D       +  ID +
Sbjct: 525 EEDRRANFVDKLLEEDNFSLTASSSSIDNA 554


>ref|NP_176103.2| helicase associated domain-containing protein [Arabidopsis thaliana]
            gi|332195372|gb|AEE33493.1| helicase associated
            domain-containing protein [Arabidopsis thaliana]
          Length = 1459

 Score = 1179 bits (3049), Expect = 0.0
 Identities = 583/871 (66%), Positives = 711/871 (81%), Gaps = 18/871 (2%)
 Frame = +3

Query: 1104 AESVHLKMAQQRKKETRKYKEMLETRSSLPIAALKDDILRSLEENSVVVISGETGCGKTT 1283
            AE + L+  Q+ KK T+KYK+ML+TR++LPI+ +K+ IL+ L+E  V+V+ GETG GKTT
Sbjct: 586  AECLSLQRKQENKKRTQKYKDMLKTRTALPISEVKNGILQHLKEKDVLVVCGETGSGKTT 645

Query: 1284 QVPQYILDNMIEAGFGGYCNVVCTQPRRIAATSVAERVADERCESYPGSNDSLVGYQVRL 1463
            QVPQ+ILD+MI++G GGYCN++CTQPRRIAA SVA+RVADERCES PG +DSLVGYQVRL
Sbjct: 646  QVPQFILDDMIDSGHGGYCNIICTQPRRIAAISVAQRVADERCESSPGLDDSLVGYQVRL 705

Query: 1464 DSARSERTKLLFCTTGILLRMISGNKDLTDISHVIVDEVHERSLLGDFLLIVLKNLIDKQ 1643
            +SARS++T+LLFCTTGILLR ++G++ L D++H+IVDEVHERSLLGDFLLI+LK+LI+KQ
Sbjct: 706  ESARSDKTRLLFCTTGILLRKLAGDRTLNDVTHIIVDEVHERSLLGDFLLIILKSLIEKQ 765

Query: 1644 QRSRGKSKLKVILMSATVDSYMFSKYFGNCPVVTAQGRTHPVSTQYLEDIYENLNYRLAS 1823
                   KLKVILMSATVD+ +FS+YFG+CPV+TAQGRTHPV+T +LE+IYE++NY LA 
Sbjct: 766  SCDNTSRKLKVILMSATVDADLFSRYFGHCPVITAQGRTHPVTTHFLEEIYESINYLLAP 825

Query: 1824 DSPASIDYGVSGTEKSAPVGNRRGKKNLVLSGWGDESLLSEEIINPYYDKSDYLNYSEQT 2003
            DSPA++    S  +K   V +RRGKKNLVL+GWGD+ LLSE+ +NP+Y  S+Y +YS+QT
Sbjct: 826  DSPAALRSDTSIKDKLGSVNDRRGKKNLVLAGWGDDYLLSEDCLNPFYVSSNYNSYSDQT 885

Query: 2004 RQNLKRLNEXXXXXXXXXXXVCHIDETYAEGAILVFLPGVAEINMLLDKLAASRRFGGHS 2183
            +QNLKRLNE           +CHID+T  EGAIL+FLPGVAEI MLLD LAAS RF G +
Sbjct: 886  QQNLKRLNEDRIDYELLEELICHIDDTCEEGAILIFLPGVAEIYMLLDMLAASYRFRGPA 945

Query: 2184 SEWLLPLHSSIAHEDQKKVFQKPPDNIRKVIVATNIAETSITIDDIVYVVDCGKHKENRY 2363
            ++WLLPLHSSIA  +Q+KVF +PP  +RKVI ATNIAETSITIDD+VYV+D GKHKENRY
Sbjct: 946  ADWLLPLHSSIASSEQRKVFLRPPKGLRKVIAATNIAETSITIDDVVYVIDSGKHKENRY 1005

Query: 2364 NPHKKLSSMVEDWISXXXXXXXXXXXXXVKPGICFCLYTKHRYEKLMRPYQIPEMMRMPL 2543
            NP KKLSSMVEDWIS             VKPGICF LYT++R+EKLMRPYQ+PEM+RMPL
Sbjct: 1006 NPQKKLSSMVEDWISQANARQRTGRAGRVKPGICFSLYTRYRFEKLMRPYQVPEMLRMPL 1065

Query: 2544 VELCLQVKLLSLGSIKQFLSKALEPPKEEAITSAVSLLYEVGAIEGDEELTPLGYHLAKL 2723
            VELCLQ+KLL LG IK FLS+ALEPP E A+TSA+SLL+EVGA+EGDEELTPLG+HLAKL
Sbjct: 1066 VELCLQIKLLGLGHIKPFLSRALEPPSEGAMTSAISLLHEVGAVEGDEELTPLGHHLAKL 1125

Query: 2724 PVDVLIGKMMLYGGIFGCLSPILTISAFLSYKSPFVYPKDEREGVERAKLALLGDQTGDA 2903
            PVDVLIGKM+LYGGIFGCLSPIL+I+AFLSYKSPF+YPKDE++ V+R KLALL D    +
Sbjct: 1126 PVDVLIGKMLLYGGIFGCLSPILSIAAFLSYKSPFIYPKDEKQNVDRVKLALLSDNGVSS 1185

Query: 2904 TVASS--RQSDHLLMMVAYQKWDKMLHMEGVKAAQRFCSSHFLSSSVMYMIRDMRIQFGT 3077
            +  ++  RQSDHLLMMVAY KW K+L   G+KAAQRFC S FLSSSVM MIRDMR+QFGT
Sbjct: 1186 SDLNNNDRQSDHLLMMVAYDKWVKILQERGMKAAQRFCESKFLSSSVMRMIRDMRVQFGT 1245

Query: 3078 LLADIGLINIPQVG---WKKKEKLENWLSDSSQPFNQYSHHSALLKAILCAGLYPNVAT- 3245
            LLADIGLIN+P+ G    +KKE L+ W SD +QPFN YS    ++KAILCAGLYPN+A  
Sbjct: 1246 LLADIGLINLPKTGEFSGRKKENLDVWFSDPTQPFNMYSQQPEVVKAILCAGLYPNIAAN 1305

Query: 3246 ------------TLEGGNTGNRPVWHDGKREVYIHPSSVNSSQKAFQYPFLVFLEKVETT 3389
                        T +G  T +   W+DG+REV+IHPSS+NS+ KAFQ PFLVFLEKVET 
Sbjct: 1306 DKGITETTFNSLTKQGNQTKSYSAWYDGRREVHIHPSSINSNFKAFQNPFLVFLEKVETN 1365

Query: 3390 KVFLRDTTIVSPFSILLFGGSINVQHQTGLIIVDNWLNMAAPAQTAVLFKELRFTLHSIL 3569
            KV+LRDTTIVSPFSILLFGGSINV HQ+G + +D WL +AAPAQTAVLFKELR TLHSIL
Sbjct: 1366 KVYLRDTTIVSPFSILLFGGSINVHHQSGSVTIDGWLKVAAPAQTAVLFKELRLTLHSIL 1425

Query: 3570 KELISKPQNAVTINNEVIRSIIHLFLEEDKP 3662
            K+LI KP+ +  ++NEV++S++HL +EE KP
Sbjct: 1426 KDLIRKPEKSGIVHNEVVKSMVHLLIEEGKP 1456



 Score =  166 bits (419), Expect = 6e-38
 Identities = 84/137 (61%), Positives = 102/137 (74%), Gaps = 2/137 (1%)
 Frame = +3

Query: 3   GDPKKIPKAVLHQLCQKSGWEAPKYDKVPXXXXXXXXXXXVLRKASGRGKSRKAGGLTTI 182
           G+ +KIPKA LHQLCQ+SGWEAPK++K             +LRKASGRGK+R+AGGL T+
Sbjct: 405 GEAQKIPKAFLHQLCQRSGWEAPKFNKETGEGRNFSYTVSILRKASGRGKNRQAGGLVTL 464

Query: 183 QLPSPDESLNT-EDAQNRVAVYALHCLFPDLPVHFALSEPYASLLLKWKEGELL-TTVTD 356
           QLP  DE+  + EDAQN+VA +ALH LF DLPVHFA++EPYASL+L WK+ ELL TT+  
Sbjct: 465 QLPPKDENFESIEDAQNKVAAFALHKLFSDLPVHFAITEPYASLVLIWKQEELLCTTIQS 524

Query: 357 KPEDRRAGFVDSLLNAD 407
             EDRRA FVD LL  D
Sbjct: 525 TEEDRRANFVDKLLEED 541