BLASTX nr result
ID: Scutellaria22_contig00000450
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Scutellaria22_contig00000450
(5081 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2835 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2785 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2785 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2771 0.0
ref|XP_002530639.1| DNA-directed RNA polymerase II largest subun... 2758 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2835 bits (7349), Expect = 0.0
Identities = 1402/1536 (91%), Positives = 1472/1536 (95%)
Frame = -1
Query: 4892 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4713
MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEHSETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 4712 DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 4533
DRKMKCETC ANMA+CPGHFGHLELAKPMFHIGFMKTVLSI+R VCFNCSKILADE++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4532 FKQAMRIRNPKNRLKKILDACKNKSKCEXXXXXXXXXXDTEEPVKKSRGGCGAQQPKISI 4353
FKQA +IRNPKNRLKKILDACKNKSKCE D++EPVKKSRGGCGAQQPK++I
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 4352 DGMKMVAEYKIQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4173
+GMKM+AEYKIQ+KKNDDPEQ+PEPVERKQ LSAE+VL++LKRI+DEDC LLGLNPKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 4172 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 3993
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 3992 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3813
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3812 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3633
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3632 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3453
+DGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3452 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3273
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3272 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN 3093
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGK+PAPAILKPRPLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3092 LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 2913
LLR SAWH E+E GFITPGDTQVRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2912 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADDSTMKKITETISNAKNQVNDLIRAAQEKQL 2733
RKFLGHTQWLVNYWLLQN FSIGIGDTIAD +TM+KI ETIS AKN+V +LIRAAQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2732 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2553
EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2552 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2373
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2372 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2193
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2192 LESLKLKKANFNDIYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ 2013
L+SLK+KK F+ ++KYEID+ NWNP+YMLPE VEDLKTIRE R+VFDAEVQKLEADR+Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2012 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1833
LGTEIATTGDNSWP+PVN+KRL+ NAQKTFKVD RRPSDMHPMEIVEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 1832 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1653
GDD +SMEAQKNATLFFNILLRS ASKRVLKEYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1652 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1473
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 1472 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1293
PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDEE+
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 1292 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1113
P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1112 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDEDDGFKA 933
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K+NKFDE +GFK
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 932 ENEWMLDTEGVNLLAVICHEDVDEKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 753
E EWMLDTEGVNLLAV+CHEDVD +RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 752 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 573
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 572 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMEGSLDFGMTPARSPHMGT 393
LRGVTENIMLGQLAPIGTGDCALYLN++ML+ AIE+ LPSYMEG LDFGMTP+RSP GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEG-LDFGMTPSRSPITGT 1499
Query: 392 PYHDGMMSPSYLLSPNVRLSPVSDAQFSPYVHGMAF 285
PYHDGMMSP+YLLSPN+RLSP++DAQFSPYV GMAF
Sbjct: 1500 PYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2785 bits (7219), Expect = 0.0
Identities = 1376/1536 (89%), Positives = 1456/1536 (94%)
Frame = -1
Query: 4892 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4713
MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4712 DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 4533
DRKMKCETC ANMA+CPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DE++PK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4532 FKQAMRIRNPKNRLKKILDACKNKSKCEXXXXXXXXXXDTEEPVKKSRGGCGAQQPKISI 4353
FKQA+RI+NPKNRL+KILDACKNK+KCE D+++PVKKSRGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4352 DGMKMVAEYKIQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4173
+GMKM AEYK Q+KKNDDPEQ+PEPVERKQ L+AE+VL ILKRITDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4172 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 3993
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 3992 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3813
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3812 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3633
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3632 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3453
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3452 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3273
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3272 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN 3093
LLGCRKITKRDTFI KDVFMNTLMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3092 LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 2913
L R SAWH E+E G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2912 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADDSTMKKITETISNAKNQVNDLIRAAQEKQL 2733
RKFLGHTQWLVNYWLLQNAFSIGIGDTIAD +TM+KI ETIS AKN+V +LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2732 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2553
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2552 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2373
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2372 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2193
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2192 LESLKLKKANFNDIYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ 2013
L+SLK+KK F I++YE ++ NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2012 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1833
LGTEIATTG+NSWP+PVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1832 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1653
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1652 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1473
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1472 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1293
P+ +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1292 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1113
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1112 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDEDDGFKA 933
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K+NKFDE++GFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 932 ENEWMLDTEGVNLLAVICHEDVDEKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 753
E EWMLDTEGVNLLAV+ HEDVD +RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 752 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 573
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 572 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMEGSLDFGMTPARSPHMGT 393
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++G LDFGMTP+RSP GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDG-LDFGMTPSRSPISGT 1499
Query: 392 PYHDGMMSPSYLLSPNVRLSPVSDAQFSPYVHGMAF 285
PYH+GMMSP+YLLSPN+RLSP+SDAQFSPYV GMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2785 bits (7219), Expect = 0.0
Identities = 1376/1536 (89%), Positives = 1456/1536 (94%)
Frame = -1
Query: 4892 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4713
MDLRFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+ GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 4712 DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 4533
DRKMKCETC ANMA+CPGHFGHLELAKPMFHIGFMKTVL+I+RSVCFNCSKIL DE++PK
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 4532 FKQAMRIRNPKNRLKKILDACKNKSKCEXXXXXXXXXXDTEEPVKKSRGGCGAQQPKISI 4353
FKQA+RI+NPKNRL+KILDACKNK+KCE D+++PVKKSRGGCGAQQPKISI
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 4352 DGMKMVAEYKIQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4173
+GMKM AEYK Q+KKNDDPEQ+PEPVERKQ L+AE+VL ILKRITDEDC+LLGLNPKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 4172 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 3993
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 3992 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3813
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3812 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3633
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3632 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3453
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3452 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3273
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3272 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN 3093
LLGCRKITKRDTFI KDVFMNTLMWWEDFDGK+PAPAILKP+PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 3092 LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 2913
L R SAWH E+E G ITPGDT VRIEKGELLSGTLCKK LGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2912 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADDSTMKKITETISNAKNQVNDLIRAAQEKQL 2733
RKFLGHTQWLVNYWLLQNAFSIGIGDTIAD +TM+KI ETIS AKN+V +LI+ AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2732 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2553
E EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2552 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2373
ACVGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2372 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2193
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2192 LESLKLKKANFNDIYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ 2013
L+SLK+KK F I++YE ++ NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2012 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1833
LGTEIATTG+NSWP+PVN+KRL+ NAQKTFK+DFRR SDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1832 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1653
G+D LS+EAQKNATLFFNILLRS ASKRVL EYRLTREAFEWVIGEIESRFLQSLVA G
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 1652 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1473
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 1472 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1293
P+ +KTKERAK VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED++FVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 1292 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1113
P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1112 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDEDDGFKA 933
NDEAPKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK K+NKFDE++GFK
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 932 ENEWMLDTEGVNLLAVICHEDVDEKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 753
E EWMLDTEGVNLLAV+ HEDVD +RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 752 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 573
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 572 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMEGSLDFGMTPARSPHMGT 393
LRGVTENIMLGQLAPIGTG CALYLN+EMLK AIE+ LPSY++G LDFGMTP+RSP GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDG-LDFGMTPSRSPISGT 1499
Query: 392 PYHDGMMSPSYLLSPNVRLSPVSDAQFSPYVHGMAF 285
PYH+GMMSP+YLLSPN+RLSP+SDAQFSPYV GMAF
Sbjct: 1500 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2771 bits (7184), Expect = 0.0
Identities = 1369/1536 (89%), Positives = 1450/1536 (94%)
Frame = -1
Query: 4892 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4713
MD+RFPFSPAEVAKVR+VQFGILSPDEIRQMSVV IEH ETTERGKPK+GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 4712 DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 4533
DRK+KCETC A+MA+CPGHFGHLELAKPMFHIGF+KTVL+I+R VCFNCSKILADE++ K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 4532 FKQAMRIRNPKNRLKKILDACKNKSKCEXXXXXXXXXXDTEEPVKKSRGGCGAQQPKISI 4353
FKQA+RIRNPKNRLKKILDACKNKSKCE DT+EPVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 4352 DGMKMVAEYKIQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4173
+GMKM+AEYK Q+KK+DD EQ+PEPVERKQ LSAE+VL +LKRI+DEDCQLLGLNPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 4172 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 3993
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 3992 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3813
EFAQLLQFH+ATYFDN+LPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3812 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3633
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3632 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3453
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3452 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3273
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3272 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN 3093
LLGCRKITKRDTFI KDVFMN LMWWEDFDGKVPAPAILKP PLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 3092 LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 2913
L+RYS+WH E+E+G ITPGDT VRIEKGELL+GTLCKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2912 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADDSTMKKITETISNAKNQVNDLIRAAQEKQL 2733
RKFLGHTQWLVNYWLLQNAFSIGIGDTIAD STM+ I +TIS AK +V LIR AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2732 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2553
EAEPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2552 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2373
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2372 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2193
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2192 LESLKLKKANFNDIYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ 2013
L+SLK+KK F+ +++YE D+ NW P YML E VEDLKTIRE R+VF+AEVQKLEADRYQ
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2012 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1833
L TEIATTGD+S PLPVN+KRL+ NAQKTFKVDFRRPSDMHPMEIVEA+DKLQERLKVV
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 1832 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1653
G+D LS EAQKNATL FNILLRS ASKRVL+EYRL+REAFEWV+GEIESRFLQSLVA+G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 1652 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1473
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 1472 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1293
DV KTKERAK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FVKSYYEMPDEE+
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 1292 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1113
+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1112 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDEDDGFKA 933
NDEAPKGE+ DESAEDDVFLKKIESNMLTEM LRGIPDINKVFIKN+K+ KFDE+ GFK
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 932 ENEWMLDTEGVNLLAVICHEDVDEKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 753
EWMLDTEGVNLLAV+CHEDVD RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 752 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 573
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAV+AETDY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 572 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMEGSLDFGMTPARSPHMGT 393
LRGVTENIMLGQLAPIGTG+CALYLN+EMLK AIE+ LPSYM+G LDFGMTPARSP GT
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMDG-LDFGMTPARSPISGT 1499
Query: 392 PYHDGMMSPSYLLSPNVRLSPVSDAQFSPYVHGMAF 285
PYH+G+MSPSYLLSPN+RLSP SDAQFSPYV GMAF
Sbjct: 1500 PYHEGLMSPSYLLSPNLRLSPTSDAQFSPYVGGMAF 1535
>ref|XP_002530639.1| DNA-directed RNA polymerase II largest subunit, putative [Ricinus
communis] gi|223529812|gb|EEF31747.1| DNA-directed RNA
polymerase II largest subunit, putative [Ricinus
communis]
Length = 1855
Score = 2758 bits (7148), Expect = 0.0
Identities = 1361/1536 (88%), Positives = 1452/1536 (94%)
Frame = -1
Query: 4892 MDLRFPFSPAEVAKVRVVQFGILSPDEIRQMSVVHIEHSETTERGKPKIGGLSDPRLGTI 4713
MD+RFP+SPAEVAKVR+VQFGILSPDEIRQMSVV IE SETTERGKPK GGLSD RLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEFSETTERGKPKPGGLSDLRLGTI 60
Query: 4712 DRKMKCETCMANMADCPGHFGHLELAKPMFHIGFMKTVLSILRSVCFNCSKILADEDEPK 4533
DRKMKCETC ANMA+CPGHFGHLELAKPMFHIGF+KTVLSI+R VCFNCSKILADE++ K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFLKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 4532 FKQAMRIRNPKNRLKKILDACKNKSKCEXXXXXXXXXXDTEEPVKKSRGGCGAQQPKISI 4353
FKQA++I+NPKNRLKKILDACKNK+KCE DT+EPVKKSRGGCGAQQP+++I
Sbjct: 121 FKQALKIKNPKNRLKKILDACKNKTKCEGGDDIDVHSQDTDEPVKKSRGGCGAQQPRMTI 180
Query: 4352 DGMKMVAEYKIQKKKNDDPEQMPEPVERKQLLSAEKVLSILKRITDEDCQLLGLNPKYAR 4173
+GMKM+AEYK Q+KKNDD EQ+PEPVERKQ L+AE+VL +LKRI+D+DC+LLG NPKYAR
Sbjct: 181 EGMKMIAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGVLKRISDDDCRLLGFNPKYAR 240
Query: 4172 PDWMILQVLXXXXXXXXPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGAPAHIIS 3993
PDWMILQVL PSVMMDTSSRSEDDLTHQLAMIIRHNENLK+QE+ GAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKKQEKGGAPAHIIS 300
Query: 3992 EFAQLLQFHVATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 3813
EFAQLLQFHVATYFDN+LPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 3812 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 3633
TVITPDP INIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 3632 DDGQRLDLRYLKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 3453
DDGQRLDLRYLKKSSD HLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 3452 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 3273
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 3272 LLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPRQIN 3093
LLGCRKITKRDTFIEKDVFMN LMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIP+QIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 3092 LLRYSAWHQETEKGFITPGDTQVRIEKGELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAA 2913
L+R +AWH ++E+G ITPGDT VRIEKGELLSGT+CKKTLGTSTGSLIHVIWEEVGPDAA
Sbjct: 601 LIRTAAWHSDSERGVITPGDTLVRIEKGELLSGTVCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2912 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADDSTMKKITETISNAKNQVNDLIRAAQEKQL 2733
RKFLGHTQWLVNYWLLQN FSIGIGDTIAD +TM+KI ETISNAKN V +LIR AQ K+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISNAKNAVKELIRKAQNKEL 720
Query: 2732 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2553
E +PGRTMMESFEN VNQVLN+ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPKPGRTMMESFENEVNQVLNRARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2552 ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGRE 2373
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2372 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQP 2193
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2192 LESLKLKKANFNDIYKYEIDNPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQ 2013
L+SLK+KK+ F+ ++KYE+D+ NWNP YM + ++DLK IRE+R VFDAEVQKLEADRYQ
Sbjct: 901 LDSLKMKKSEFDRVFKYELDDENWNPTYMYQDHIDDLKNIRELRDVFDAEVQKLEADRYQ 960
Query: 2012 LGTEIATTGDNSWPLPVNIKRLVLNAQKTFKVDFRRPSDMHPMEIVEAVDKLQERLKVVV 1833
LGTEIATTGD+SWPLPVN++RL+ NAQKTFKVD RRPSD+HPME VEAVDKLQERLKVV
Sbjct: 961 LGTEIATTGDSSWPLPVNLRRLIWNAQKTFKVDKRRPSDIHPMEAVEAVDKLQERLKVVP 1020
Query: 1832 GDDYLSMEAQKNATLFFNILLRSALASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAAG 1653
GDD LS+EAQKNATLFF ILLRS LASKRVL++YRLTREAF+WVIGEIESRFLQSLVA G
Sbjct: 1021 GDDPLSVEAQKNATLFFGILLRSTLASKRVLEDYRLTREAFDWVIGEIESRFLQSLVAPG 1080
Query: 1652 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1473
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLS++L
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSIFLI 1140
Query: 1472 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVEFVKSYYEMPDEEI 1293
P+ +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDV+FVKSYYEMPDEEI
Sbjct: 1141 PECNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEI 1200
Query: 1292 DPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1113
P+KISPWLLRIELNREMMVDKKL+MADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPEKISPWLLRIELNREMMVDKKLNMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 1112 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNSKLNKFDEDDGFKA 933
NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK SK++KFDE++GFK
Sbjct: 1261 NDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQSKVSKFDENEGFKT 1320
Query: 932 ENEWMLDTEGVNLLAVICHEDVDEKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 753
EWMLDTEGVNLLAV+C+E+VD +RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 IEEWMLDTEGVNLLAVMCNENVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 752 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVFAETDY 573
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAV+AE DY
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAEADY 1440
Query: 572 LRGVTENIMLGQLAPIGTGDCALYLNEEMLKQAIEIPLPSYMEGSLDFGMTPARSPHMGT 393
LRGVTENIMLGQLAPIGTGDCALYLN++MLK AIE+ LPSYM+G LDFGMTPARSP T
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDDMLKNAIELQLPSYMDG-LDFGMTPARSPVSVT 1499
Query: 392 PYHDGMMSPSYLLSPNVRLSPVSDAQFSPYVHGMAF 285
PYHDGMMSPSYLLSP++RLSP +DAQFSPYV GM F
Sbjct: 1500 PYHDGMMSPSYLLSPSLRLSPTTDAQFSPYVSGMPF 1535