BLASTX nr result

ID: Salvia21_contig00017710 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00017710
         (319 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523234.1| PREDICTED: high mobility group B protein 9-l...   110   9e-23
ref|XP_002889059.1| high mobility group family protein [Arabidop...   110   2e-22
ref|XP_002307758.1| high mobility group family [Populus trichoca...   108   5e-22
ref|NP_177738.1| high mobility group-box and ARID domain-binding...   106   2e-21
gb|ABK95398.1| unknown [Populus trichocarpa]                          106   2e-21

>ref|XP_003523234.1| PREDICTED: high mobility group B protein 9-like [Glycine max]
          Length = 322

 Score =  110 bits (276), Expect = 9e-23
 Identities = 51/70 (72%), Positives = 59/70 (84%)
 Frame = -3

Query: 212 GGEIPVPLASHDDVVKDRTLFFNTLRSFHFALASKFLIPVIGGKELNLHVLYVEVTRRGG 33
           G   P PLA H+ VVKD TLF++TLR FHF + +KF+IPVIGGKEL+LHVLYVEVTRR G
Sbjct: 13  GKHYPAPLAPHEGVVKDSTLFWDTLRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSG 72

Query: 32  YDKVVAEKKW 3
           Y+KVVAEKKW
Sbjct: 73  YEKVVAEKKW 82


>ref|XP_002889059.1| high mobility group family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297334900|gb|EFH65318.1| high mobility group
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 338

 Score =  110 bits (274), Expect = 2e-22
 Identities = 53/77 (68%), Positives = 66/77 (85%)
 Frame = -3

Query: 233 SPEKLRNGGEIPVPLASHDDVVKDRTLFFNTLRSFHFALASKFLIPVIGGKELNLHVLYV 54
           SP K++   E P PLASH+ VVKD ++F++TLR FH  +++KF+IPVIGGKEL+LHVLYV
Sbjct: 20  SPAKIK---EYPEPLASHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYV 76

Query: 53  EVTRRGGYDKVVAEKKW 3
           EVTRRGGY+KVVAEKKW
Sbjct: 77  EVTRRGGYEKVVAEKKW 93


>ref|XP_002307758.1| high mobility group family [Populus trichocarpa]
           gi|222857207|gb|EEE94754.1| high mobility group family
           [Populus trichocarpa]
          Length = 329

 Score =  108 bits (270), Expect = 5e-22
 Identities = 53/80 (66%), Positives = 63/80 (78%), Gaps = 3/80 (3%)
 Frame = -3

Query: 233 SPEKLRNGGE---IPVPLASHDDVVKDRTLFFNTLRSFHFALASKFLIPVIGGKELNLHV 63
           S  KL+ G E    P PLASH+DVV D ++F++TLR FHF + +KF+IPVIGGKEL+L V
Sbjct: 5   SKRKLKAGMENKHYPAPLASHEDVVNDPSVFWDTLRRFHFVMGTKFMIPVIGGKELDLQV 64

Query: 62  LYVEVTRRGGYDKVVAEKKW 3
           LYVE T RGGYDKVVAEKKW
Sbjct: 65  LYVETTNRGGYDKVVAEKKW 84


>ref|NP_177738.1| high mobility group-box and ARID domain-binding domain-containing
           protein [Arabidopsis thaliana]
           gi|75265821|sp|Q9SGS2.1|HMGB9_ARATH RecName: Full=High
           mobility group B protein 9; AltName:
           Full=Nucleosome/chromatin assembly factor group D 09;
           Short=Nucleosome/chromatin assembly factor group D 9
           gi|6573729|gb|AAF17649.1|AC009978_25 T23E18.4
           [Arabidopsis thaliana] gi|20466328|gb|AAM20481.1|
           unknown protein [Arabidopsis thaliana]
           gi|31711812|gb|AAP68262.1| At1g76110 [Arabidopsis
           thaliana] gi|332197676|gb|AEE35797.1| high mobility
           group-box and ARID domain-binding domain-containing
           protein [Arabidopsis thaliana]
          Length = 338

 Score =  106 bits (265), Expect = 2e-21
 Identities = 52/84 (61%), Positives = 66/84 (78%)
 Frame = -3

Query: 254 TTLSLLMSPEKLRNGGEIPVPLASHDDVVKDRTLFFNTLRSFHFALASKFLIPVIGGKEL 75
           T   +  SP K++   E P PLA H+ VVKD ++F++TLR FH  +++KF+IPVIGGKEL
Sbjct: 13  TVEMMATSPAKIK---EYPEPLALHEVVVKDSSVFWDTLRRFHSIMSTKFMIPVIGGKEL 69

Query: 74  NLHVLYVEVTRRGGYDKVVAEKKW 3
           +LHVLYVEVTRRGGY+KVV EKKW
Sbjct: 70  DLHVLYVEVTRRGGYEKVVVEKKW 93


>gb|ABK95398.1| unknown [Populus trichocarpa]
          Length = 317

 Score =  106 bits (265), Expect = 2e-21
 Identities = 48/66 (72%), Positives = 57/66 (86%)
 Frame = -3

Query: 200 PVPLASHDDVVKDRTLFFNTLRSFHFALASKFLIPVIGGKELNLHVLYVEVTRRGGYDKV 21
           P PLASH+DVV D ++F++TLR FHF + +KF+IPVIGGKEL+L VLYVE T RGGYDKV
Sbjct: 7   PAPLASHEDVVNDPSVFWDTLRRFHFVMGTKFMIPVIGGKELDLQVLYVETTNRGGYDKV 66

Query: 20  VAEKKW 3
           VAEKKW
Sbjct: 67  VAEKKW 72


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