BLASTX nr result

ID: Salvia21_contig00016980 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00016980
         (917 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   379   e-103
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   377   e-102
ref|XP_002530618.1| TFIIH basal transcription factor complex sub...   335   1e-89
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g...   306   3e-81
ref|NP_175971.3| transcription initiation factor TFIIH subunit H...   305   1e-80

>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
            1-1 [Vitis vinifera] gi|296090002|emb|CBI39821.3| unnamed
            protein product [Vitis vinifera]
          Length = 602

 Score =  379 bits (972), Expect = e-103
 Identities = 190/306 (62%), Positives = 239/306 (78%), Gaps = 1/306 (0%)
 Frame = -1

Query: 917  SRRPKQRLALKNEMWS-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLKFVPHKM 741
            SR  KQR+  K+ M S +KPL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+L FVP+KM
Sbjct: 172  SRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKM 231

Query: 740  SEKEFWTKYSRAQYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRVDPTVD 561
            +EK+FW KY RA+YLH TRN V            AVFLK DD+LANEARRKIRRVDPT+D
Sbjct: 232  TEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILANEARRKIRRVDPTLD 291

Query: 560  IEADEGDDYTHLPDHGLVRDEAKDVLDSQYEPYRRSFSQDLNQHSAVVLQGRVVDVELSD 381
            +EAD+GDDY HLPDHG+ RD +K+++D QYE YRR+ SQDLN+H+AVVL+GR +DVEL D
Sbjct: 292  MEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELED 351

Query: 380  TRSVAEALSRKKQAELSDDKSNTNLEKDLSNRISRSAEIEDLQGPRDPAVAPLSIKDPRD 201
            TR+VAEAL++ K+ E +++KS+ ++ ++   RISR  EIEDLQ PRD   A L IKDPRD
Sbjct: 352  TRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRD 411

Query: 200  YFDSQQANALKALGDTGSTTKPFISSVSAGQAYDSLRNVVIDIKEMGLNEPIMNQEVALK 21
            YFDSQQANALK LGDT + +K    S+S  +AY SLR  + +IK +GL++PI+  ++ALK
Sbjct: 412  YFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFISEIKSVGLSDPIVKPDIALK 471

Query: 20   VLTGLT 3
            VL GLT
Sbjct: 472  VLNGLT 477


>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  377 bits (968), Expect = e-102
 Identities = 189/306 (61%), Positives = 240/306 (78%), Gaps = 1/306 (0%)
 Frame = -1

Query: 917  SRRPKQRLALKNEMWS-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLKFVPHKM 741
            SR  KQR+  K+ M S +KPL+DG++NRVTFNLTPEIIHQIFAEKPAV QA+L FVP+KM
Sbjct: 215  SRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFAEKPAVHQAFLNFVPNKM 274

Query: 740  SEKEFWTKYSRAQYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRVDPTVD 561
            +EK+FW KY RA+YLH TRN V            AVFLK DD+LA+EARRKIRRVDPT+D
Sbjct: 275  TEKDFWNKYCRAEYLHCTRNTVAAAAEAAEDEELAVFLKHDDILASEARRKIRRVDPTLD 334

Query: 560  IEADEGDDYTHLPDHGLVRDEAKDVLDSQYEPYRRSFSQDLNQHSAVVLQGRVVDVELSD 381
            +EAD+GDDY HLPDHG+ RD +K+++D QYE YRR+ SQDLN+H+AVVL+GR +DVEL D
Sbjct: 335  MEADQGDDYMHLPDHGIFRDGSKEIIDPQYEQYRRTLSQDLNRHAAVVLEGRPIDVELED 394

Query: 380  TRSVAEALSRKKQAELSDDKSNTNLEKDLSNRISRSAEIEDLQGPRDPAVAPLSIKDPRD 201
            TR+VAEAL++ K+ E +++KS+ ++ ++   RISR  EIEDLQ PRD   A L IKDPRD
Sbjct: 395  TRTVAEALAKSKRVEAANEKSDGSVTRERLERISRMTEIEDLQAPRDLPFAALCIKDPRD 454

Query: 200  YFDSQQANALKALGDTGSTTKPFISSVSAGQAYDSLRNVVIDIKEMGLNEPIMNQEVALK 21
            YFDSQQANALK LGDT + +K    S+S+ +AY SLR  + +IK +GL++PI+  ++ALK
Sbjct: 455  YFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFISEIKSVGLSDPIVKPDIALK 514

Query: 20   VLTGLT 3
            VL GLT
Sbjct: 515  VLNGLT 520


>ref|XP_002530618.1| TFIIH basal transcription factor complex subunit, putative [Ricinus
            communis] gi|223529828|gb|EEF31761.1| TFIIH basal
            transcription factor complex subunit, putative [Ricinus
            communis]
          Length = 597

 Score =  335 bits (858), Expect = 1e-89
 Identities = 176/308 (57%), Positives = 232/308 (75%), Gaps = 3/308 (0%)
 Frame = -1

Query: 917  SRRPKQRLALKNEMWS-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLKFVPHKM 741
            SR+ KQR+ LK+ M +  KPL DGQ+N+VTFNLTPEI+ +IFAEKPAV QAYL  VP+KM
Sbjct: 167  SRKSKQRVGLKSVMLADSKPLIDGQTNKVTFNLTPEIVREIFAEKPAVHQAYLSLVPNKM 226

Query: 740  SEKEFWTKYSRAQYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRVDPTVD 561
            SE++FWTKY RA+YL  +RN+             A+FLK DD+LA+E R+KIR VDPT+D
Sbjct: 227  SERDFWTKYCRAEYLQRSRNIHAAAAEAAEDEELALFLKPDDILASETRQKIRCVDPTLD 286

Query: 560  IEADEGDDYTHLPDHGLVRDEAKDVLDSQYEPYRRSFSQDLNQHSAVVLQGRVVDVE-LS 384
            +EAD+GDDYTHLPDHG+VRD +KDV++SQ+EPYRR+  QDLN+H+AVVL+G  +D E L 
Sbjct: 287  MEADQGDDYTHLPDHGIVRDGSKDVIESQHEPYRRTLLQDLNRHAAVVLEGTAIDDEQLQ 346

Query: 383  DTRSVAEALSRKKQA-ELSDDKSNTNLEKDLSNRISRSAEIEDLQGPRDPAVAPLSIKDP 207
            DT++VA+AL+R K+  +  + +++ N  ++ SNRIS+  EIEDLQG  D  +APL IKDP
Sbjct: 347  DTKAVADALARSKRGIKTINREADGNANQERSNRISQMMEIEDLQGSNDHHLAPLCIKDP 406

Query: 206  RDYFDSQQANALKALGDTGSTTKPFISSVSAGQAYDSLRNVVIDIKEMGLNEPIMNQEVA 27
            RDYFDSQQA+ALK   D  S T+    S+S+ +AY SLR+ +   K MGLN+PI+  E+A
Sbjct: 407  RDYFDSQQASALKNSRDIPSGTEAARCSLSSQEAYASLRDSITQTKAMGLNDPIVKPEIA 466

Query: 26   LKVLTGLT 3
             KVL+ LT
Sbjct: 467  TKVLSILT 474


>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
            gi|38636938|dbj|BAD03200.1| unknown protein [Oryza sativa
            Japonica Group] gi|113623552|dbj|BAF23497.1| Os08g0338200
            [Oryza sativa Japonica Group]
            gi|215686948|dbj|BAG90767.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 604

 Score =  306 bits (785), Expect = 3e-81
 Identities = 164/305 (53%), Positives = 213/305 (69%), Gaps = 5/305 (1%)
 Frame = -1

Query: 905  KQRLALKNEMWS-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLKFVPHKMSEKE 729
            KQR   K+ M + V+P +DG++N+VTF+LT EIIHQIFAEKPAV +A+L FVP KMSEK+
Sbjct: 181  KQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAEKPAVHRAFLDFVPKKMSEKD 240

Query: 728  FWTKYSRAQYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRVDPTVDIEAD 549
            FWTKY RA+YL  T+N V            A+FLK DD+LA EAR KI+RVDPT+D+EAD
Sbjct: 241  FWTKYFRAEYLLRTKNTVAATAEAAEDEELAIFLKNDDILAKEARLKIKRVDPTLDMEAD 300

Query: 548  EGDDYTHLPDHGLVRDEAKDVLDSQYEPYRRSFSQDLNQHSAVVLQGRVVDVELSDTRSV 369
             GDDY HLPDHG++RD +K+ +D+  E  RR+ SQDLN+H+AVVL+GR  DVEL+DT++V
Sbjct: 301  AGDDYIHLPDHGIIRDGSKETIDNDGELARRTLSQDLNRHAAVVLEGRSSDVELTDTKTV 360

Query: 368  AEALSRKKQ----AELSDDKSNTNLEKDLSNRISRSAEIEDLQGPRDPAVAPLSIKDPRD 201
            AEA++R K+    + +SDD ++  L K     ++R  EIEDLQ PR    APL IKDPR+
Sbjct: 361  AEAIARSKKEPPSSSISDDTNHERLVK-----VARMTEIEDLQAPRSLPYAPLCIKDPRE 415

Query: 200  YFDSQQANALKALGDTGSTTKPFISSVSAGQAYDSLRNVVIDIKEMGLNEPIMNQEVALK 21
            YFDSQQANAL++LG            +S   A+D L   +  IK  GLN P++  +VALK
Sbjct: 416  YFDSQQANALRSLGGNNDGRHARNCRLSTDDAFDHLLGQISSIKVNGLNYPVIQSDVALK 475

Query: 20   VLTGL 6
            VL  L
Sbjct: 476  VLNEL 480


>ref|NP_175971.3| transcription initiation factor TFIIH subunit H1 [Arabidopsis
            thaliana] gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
            Full=Probable RNA polymerase II transcription factor B
            subunit 1-1; AltName: Full=General transcription and DNA
            repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
            Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
            hypothetical protein [Arabidopsis thaliana]
            gi|332195172|gb|AEE33293.1| transcription initiation
            factor TFIIH subunit H1 [Arabidopsis thaliana]
          Length = 591

 Score =  305 bits (781), Expect = 1e-80
 Identities = 157/305 (51%), Positives = 215/305 (70%), Gaps = 1/305 (0%)
 Frame = -1

Query: 914  RRPKQRLALKNEMWS-VKPLSDGQSNRVTFNLTPEIIHQIFAEKPAVRQAYLKFVPHKMS 738
            R+ KQ+L LK+ M S +KP +DG++NRVTFNLTPEII QIFAEKPAVRQA++ +VP KM+
Sbjct: 168  RKSKQQLGLKSMMVSGIKPSTDGRTNRVTFNLTPEIIFQIFAEKPAVRQAFINYVPSKMT 227

Query: 737  EKEFWTKYSRAQYLHSTRNVVXXXXXXXXXXXXAVFLKRDDMLANEARRKIRRVDPTVDI 558
            EK+FWTKY RA+YL+ST+N              AVFLK D++LA E R KIRRVDPT+D+
Sbjct: 228  EKDFWTKYFRAEYLYSTKNTAVAAAEAAEDEELAVFLKPDEILARETRHKIRRVDPTLDM 287

Query: 557  EADEGDDYTHLPDHGLVRDEAKDVLDSQYEPYRRSFSQDLNQHSAVVLQGRVVDVELSDT 378
            EAD+GDDYTHL DHG+ RD   DV++ Q + ++RS  QDLN+H+AVVL+GR +DVE  DT
Sbjct: 288  EADQGDDYTHLMDHGIQRDGTMDVVEPQNDQFKRSLLQDLNRHAAVVLEGRSIDVESEDT 347

Query: 377  RSVAEALSRKKQAELSDDKSNTNLEKDLSNRISRSAEIEDLQGPRDPAVAPLSIKDPRDY 198
            R VAEAL+R KQ   +D ++  +  ++   R+SR A +EDLQ P++  +APLSIKDPRDY
Sbjct: 348  RIVAEALTRVKQVSKADGETTKDANQERLERMSRVAGMEDLQAPQNFPLAPLSIKDPRDY 407

Query: 197  FDSQQANALKALGDTGSTTKPFISSVSAGQAYDSLRNVVIDIKEMGLNEPIMNQEVALKV 18
            F+SQQ N L          +      +  +AY  L+  +++I+  GL++P++  EV+ +V
Sbjct: 408  FESQQGNVLNVPRGAKGLKR------NVHEAYGLLKESILEIRATGLSDPLIKPEVSFEV 461

Query: 17   LTGLT 3
             + LT
Sbjct: 462  FSSLT 466


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