BLASTX nr result
ID: Salvia21_contig00012173
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Salvia21_contig00012173
(843 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 164 3e-59
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 160 9e-55
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 148 2e-52
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 146 2e-49
ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera] ... 144 3e-48
>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
(chloroplast) [Salvia miltiorrhiza]
Length = 1395
Score = 164 bits (415), Expect(2) = 3e-59
Identities = 84/90 (93%), Positives = 85/90 (94%)
Frame = +2
Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331
Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
GLKGLVPYSKQHNRSPLEMETKK G+
Sbjct: 1332 GLKGLVPYSKQHNRSPLEMETKKNNLFEGE 1361
Score = 91.3 bits (225), Expect(2) = 3e-59
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = +1
Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
KKNNLFEGEMRDILFHHRKLFDSLFSKNF DRPEQAFIGFNDS
Sbjct: 1353 KKNNLFEGEMRDILFHHRKLFDSLFSKNFHDRPEQAFIGFNDS 1395
>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
gi|438687594|emb|CCP47120.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688278|emb|CCP47209.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
gi|438688402|emb|CCP47298.1| RNA polymerase beta''
subunit (chloroplast) [Tectona grandis]
Length = 1395
Score = 160 bits (405), Expect(2) = 9e-55
Identities = 83/90 (92%), Positives = 84/90 (93%)
Frame = +2
Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331
Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
GLKGLVP SKQHNRSPLEMETKK G+
Sbjct: 1332 GLKGLVPPSKQHNRSPLEMETKKNNLFEGE 1361
Score = 80.1 bits (196), Expect(2) = 9e-55
Identities = 37/43 (86%), Positives = 38/43 (88%)
Frame = +1
Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
KKNNLFEGE RDILFHHRKLFDS SKNF DR EQ+FIGFNDS
Sbjct: 1353 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRLEQSFIGFNDS 1395
>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
(chloroplast) [Sesamum indicum]
Length = 1390
Score = 148 bits (374), Expect(2) = 2e-52
Identities = 78/90 (86%), Positives = 81/90 (90%)
Frame = +2
Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR+DWLKGLKENVVLGGMIPVGT
Sbjct: 1269 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVLGGMIPVGT 1328
Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
GLKGLVP SKQHN+ PL ETKK G+
Sbjct: 1329 GLKGLVPPSKQHNKGPL--ETKKNNLFEGE 1356
Score = 84.0 bits (206), Expect(2) = 2e-52
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +1
Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
KKNNLFEGE RDILFHHRKLFDS SKNF DRPEQ+FIGFNDS
Sbjct: 1348 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 1390
>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit
(chloroplast) [Boea hygrometrica]
Length = 1381
Score = 146 bits (369), Expect(2) = 2e-49
Identities = 76/83 (91%), Positives = 79/83 (95%)
Frame = +2
Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
YRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1260 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1319
Query: 182 GLKGLVPYSKQHNRSPLEMETKK 250
GLKG VP SKQHN+SPL +TKK
Sbjct: 1320 GLKGFVPPSKQHNKSPL--QTKK 1340
Score = 75.9 bits (185), Expect(2) = 2e-49
Identities = 34/43 (79%), Positives = 37/43 (86%)
Frame = +1
Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
KK+NLFEGEMRDILFHH++LFDS SKNF D EQ FIGFNDS
Sbjct: 1339 KKDNLFEGEMRDILFHHKRLFDSFLSKNFHDTSEQLFIGFNDS 1381
>ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera]
gi|122224053|sp|Q0ZJ30.1|RPOC2_VITVI RecName:
Full=DNA-directed RNA polymerase subunit beta''; AltName:
Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
subunit beta''; Short=RNA polymerase subunit beta''
gi|91701640|gb|ABE47524.1| RNA polymerase beta' subunit
[Vitis vinifera]
Length = 1394
Score = 144 bits (364), Expect(2) = 3e-48
Identities = 74/83 (89%), Positives = 76/83 (91%)
Frame = +2
Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
YR +LLGITRASLNTQSFISEASFQETARVLAKAAL GRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1271 YRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGGMIPVGT 1330
Query: 182 GLKGLVPYSKQHNRSPLEMETKK 250
G KGLV S+QHN PLEMETKK
Sbjct: 1331 GFKGLVHRSRQHNNIPLEMETKK 1353
Score = 73.9 bits (180), Expect(2) = 3e-48
Identities = 34/43 (79%), Positives = 37/43 (86%)
Frame = +1
Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
KKNNLFE EMRDILFHHR+LFDS SKNF D EQ+F+GFNDS
Sbjct: 1352 KKNNLFEREMRDILFHHRELFDSCSSKNFHDTSEQSFMGFNDS 1394