BLASTX nr result
ID: Salvia21_contig00012173
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Salvia21_contig00012173 (843 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ... 164 3e-59 ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ... 160 9e-55 ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in... 148 2e-52 ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro... 146 2e-49 ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera] ... 144 3e-48 >ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza] gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza] Length = 1395 Score = 164 bits (415), Expect(2) = 3e-59 Identities = 84/90 (93%), Positives = 85/90 (94%) Frame = +2 Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331 Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271 GLKGLVPYSKQHNRSPLEMETKK G+ Sbjct: 1332 GLKGLVPYSKQHNRSPLEMETKKNNLFEGE 1361 Score = 91.3 bits (225), Expect(2) = 3e-59 Identities = 42/43 (97%), Positives = 42/43 (97%) Frame = +1 Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372 KKNNLFEGEMRDILFHHRKLFDSLFSKNF DRPEQAFIGFNDS Sbjct: 1353 KKNNLFEGEMRDILFHHRKLFDSLFSKNFHDRPEQAFIGFNDS 1395 >ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis] gi|438687594|emb|CCP47120.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis] gi|438688278|emb|CCP47209.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis] gi|438688402|emb|CCP47298.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis] Length = 1395 Score = 160 bits (405), Expect(2) = 9e-55 Identities = 83/90 (92%), Positives = 84/90 (93%) Frame = +2 Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331 Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271 GLKGLVP SKQHNRSPLEMETKK G+ Sbjct: 1332 GLKGLVPPSKQHNRSPLEMETKKNNLFEGE 1361 Score = 80.1 bits (196), Expect(2) = 9e-55 Identities = 37/43 (86%), Positives = 38/43 (88%) Frame = +1 Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372 KKNNLFEGE RDILFHHRKLFDS SKNF DR EQ+FIGFNDS Sbjct: 1353 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRLEQSFIGFNDS 1395 >ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum] gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit (chloroplast) [Sesamum indicum] Length = 1390 Score = 148 bits (374), Expect(2) = 2e-52 Identities = 78/90 (86%), Positives = 81/90 (90%) Frame = +2 Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR+DWLKGLKENVVLGGMIPVGT Sbjct: 1269 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVLGGMIPVGT 1328 Query: 182 GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271 GLKGLVP SKQHN+ PL ETKK G+ Sbjct: 1329 GLKGLVPPSKQHNKGPL--ETKKNNLFEGE 1356 Score = 84.0 bits (206), Expect(2) = 2e-52 Identities = 38/43 (88%), Positives = 39/43 (90%) Frame = +1 Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372 KKNNLFEGE RDILFHHRKLFDS SKNF DRPEQ+FIGFNDS Sbjct: 1348 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 1390 >ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica] gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit (chloroplast) [Boea hygrometrica] Length = 1381 Score = 146 bits (369), Expect(2) = 2e-49 Identities = 76/83 (91%), Positives = 79/83 (95%) Frame = +2 Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181 YRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT Sbjct: 1260 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1319 Query: 182 GLKGLVPYSKQHNRSPLEMETKK 250 GLKG VP SKQHN+SPL +TKK Sbjct: 1320 GLKGFVPPSKQHNKSPL--QTKK 1340 Score = 75.9 bits (185), Expect(2) = 2e-49 Identities = 34/43 (79%), Positives = 37/43 (86%) Frame = +1 Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372 KK+NLFEGEMRDILFHH++LFDS SKNF D EQ FIGFNDS Sbjct: 1339 KKDNLFEGEMRDILFHHKRLFDSFLSKNFHDTSEQLFIGFNDS 1381 >ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera] gi|122224053|sp|Q0ZJ30.1|RPOC2_VITVI RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' gi|91701640|gb|ABE47524.1| RNA polymerase beta' subunit [Vitis vinifera] Length = 1394 Score = 144 bits (364), Expect(2) = 3e-48 Identities = 74/83 (89%), Positives = 76/83 (91%) Frame = +2 Query: 2 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181 YR +LLGITRASLNTQSFISEASFQETARVLAKAAL GRIDWLKGLKENVVLGGMIPVGT Sbjct: 1271 YRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGGMIPVGT 1330 Query: 182 GLKGLVPYSKQHNRSPLEMETKK 250 G KGLV S+QHN PLEMETKK Sbjct: 1331 GFKGLVHRSRQHNNIPLEMETKK 1353 Score = 73.9 bits (180), Expect(2) = 3e-48 Identities = 34/43 (79%), Positives = 37/43 (86%) Frame = +1 Query: 244 KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372 KKNNLFE EMRDILFHHR+LFDS SKNF D EQ+F+GFNDS Sbjct: 1352 KKNNLFEREMRDILFHHRELFDSCSSKNFHDTSEQSFMGFNDS 1394