BLASTX nr result

ID: Salvia21_contig00012173 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00012173
         (843 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) ...   164   3e-59
ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) ...   160   9e-55
ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum in...   148   2e-52
ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygro...   146   2e-49
ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera] ...   144   3e-48

>ref|YP_007507101.1| RNA polymerase beta subunit-2 (chloroplast) [Salvia miltiorrhiza]
            gi|401879732|gb|AFQ30919.1| RNA polymerase beta subunit-2
            (chloroplast) [Salvia miltiorrhiza]
          Length = 1395

 Score =  164 bits (415), Expect(2) = 3e-59
 Identities = 84/90 (93%), Positives = 85/90 (94%)
 Frame = +2

Query: 2    YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
            YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331

Query: 182  GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
            GLKGLVPYSKQHNRSPLEMETKK     G+
Sbjct: 1332 GLKGLVPYSKQHNRSPLEMETKKNNLFEGE 1361



 Score = 91.3 bits (225), Expect(2) = 3e-59
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = +1

Query: 244  KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
            KKNNLFEGEMRDILFHHRKLFDSLFSKNF DRPEQAFIGFNDS
Sbjct: 1353 KKNNLFEGEMRDILFHHRKLFDSLFSKNFHDRPEQAFIGFNDS 1395


>ref|YP_007353905.1| RNA polymerase beta'' subunit (chloroplast) [Tectona grandis]
            gi|438687594|emb|CCP47120.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
            gi|438688278|emb|CCP47209.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
            gi|438688402|emb|CCP47298.1| RNA polymerase beta''
            subunit (chloroplast) [Tectona grandis]
          Length = 1395

 Score =  160 bits (405), Expect(2) = 9e-55
 Identities = 83/90 (92%), Positives = 84/90 (93%)
 Frame = +2

Query: 2    YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
            YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1272 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1331

Query: 182  GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
            GLKGLVP SKQHNRSPLEMETKK     G+
Sbjct: 1332 GLKGLVPPSKQHNRSPLEMETKKNNLFEGE 1361



 Score = 80.1 bits (196), Expect(2) = 9e-55
 Identities = 37/43 (86%), Positives = 38/43 (88%)
 Frame = +1

Query: 244  KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
            KKNNLFEGE RDILFHHRKLFDS  SKNF DR EQ+FIGFNDS
Sbjct: 1353 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRLEQSFIGFNDS 1395


>ref|YP_004935656.2| rpoC2 gene product (chloroplast) [Sesamum indicum]
            gi|378747302|gb|AEO92696.2| RNA polymerase beta'' subunit
            (chloroplast) [Sesamum indicum]
          Length = 1390

 Score =  148 bits (374), Expect(2) = 2e-52
 Identities = 78/90 (86%), Positives = 81/90 (90%)
 Frame = +2

Query: 2    YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
            YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGR+DWLKGLKENVVLGGMIPVGT
Sbjct: 1269 YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVVLGGMIPVGT 1328

Query: 182  GLKGLVPYSKQHNRSPLEMETKKTIYSRGK 271
            GLKGLVP SKQHN+ PL  ETKK     G+
Sbjct: 1329 GLKGLVPPSKQHNKGPL--ETKKNNLFEGE 1356



 Score = 84.0 bits (206), Expect(2) = 2e-52
 Identities = 38/43 (88%), Positives = 39/43 (90%)
 Frame = +1

Query: 244  KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
            KKNNLFEGE RDILFHHRKLFDS  SKNF DRPEQ+FIGFNDS
Sbjct: 1348 KKNNLFEGETRDILFHHRKLFDSFLSKNFHDRPEQSFIGFNDS 1390


>ref|YP_004940500.1| rpoC2 gene product (chloroplast) [Boea hygrometrica]
            gi|340549397|gb|AEK53219.1| RNA polymerase beta'' subunit
            (chloroplast) [Boea hygrometrica]
          Length = 1381

 Score =  146 bits (369), Expect(2) = 2e-49
 Identities = 76/83 (91%), Positives = 79/83 (95%)
 Frame = +2

Query: 2    YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
            YRA+LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1260 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 1319

Query: 182  GLKGLVPYSKQHNRSPLEMETKK 250
            GLKG VP SKQHN+SPL  +TKK
Sbjct: 1320 GLKGFVPPSKQHNKSPL--QTKK 1340



 Score = 75.9 bits (185), Expect(2) = 2e-49
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = +1

Query: 244  KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
            KK+NLFEGEMRDILFHH++LFDS  SKNF D  EQ FIGFNDS
Sbjct: 1339 KKDNLFEGEMRDILFHHKRLFDSFLSKNFHDTSEQLFIGFNDS 1381


>ref|YP_567066.1| RNA polymerase beta'' subunit [Vitis vinifera]
            gi|122224053|sp|Q0ZJ30.1|RPOC2_VITVI RecName:
            Full=DNA-directed RNA polymerase subunit beta''; AltName:
            Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit beta''; Short=RNA polymerase subunit beta''
            gi|91701640|gb|ABE47524.1| RNA polymerase beta' subunit
            [Vitis vinifera]
          Length = 1394

 Score =  144 bits (364), Expect(2) = 3e-48
 Identities = 74/83 (89%), Positives = 76/83 (91%)
 Frame = +2

Query: 2    YRALLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGT 181
            YR +LLGITRASLNTQSFISEASFQETARVLAKAAL GRIDWLKGLKENVVLGGMIPVGT
Sbjct: 1271 YRTILLGITRASLNTQSFISEASFQETARVLAKAALWGRIDWLKGLKENVVLGGMIPVGT 1330

Query: 182  GLKGLVPYSKQHNRSPLEMETKK 250
            G KGLV  S+QHN  PLEMETKK
Sbjct: 1331 GFKGLVHRSRQHNNIPLEMETKK 1353



 Score = 73.9 bits (180), Expect(2) = 3e-48
 Identities = 34/43 (79%), Positives = 37/43 (86%)
 Frame = +1

Query: 244  KKNNLFEGEMRDILFHHRKLFDSLFSKNFQDRPEQAFIGFNDS 372
            KKNNLFE EMRDILFHHR+LFDS  SKNF D  EQ+F+GFNDS
Sbjct: 1352 KKNNLFEREMRDILFHHRELFDSCSSKNFHDTSEQSFMGFNDS 1394


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