BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00009616
         (3161 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su...  1591   0.0  
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su...  1555   0.0  
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1555   0.0  
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S...  1549   0.0  
gb|AFW57310.1| RNA polymerase II large subunit family protein [Z...  1542   0.0  

>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
            vinifera]
          Length = 1848

 Score = 1591 bits (4120), Expect = 0.0
 Identities = 788/874 (90%), Positives = 839/874 (95%)
 Frame = +1

Query: 1    FLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEA 180
            FLGHTQWLVNYWLLQN FS+GIGDTIAD  TM KI+ETI+KAKNEV ELIRAAQE+QLEA
Sbjct: 663  FLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQLEA 722

Query: 181  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTAC 360
            EPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTAC
Sbjct: 723  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 782

Query: 361  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGREGL 540
            VGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGREGL
Sbjct: 783  VGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 842

Query: 541  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLE 720
            IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIE+Q L+
Sbjct: 843  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQKLD 902

Query: 721  SLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQLG 900
            SLK+K+ +F+ ++KYEID  NWNP+YMLPE VEDLKTIRE R+VFDAEVQKLEADR+QLG
Sbjct: 903  SLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQLG 962

Query: 901  TEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVVGD 1080
            TEIATTGDNSWP+PVN+KRL+ NAQKTF+VD RRPSDMHPMEIVEAVDKLQERLKVV GD
Sbjct: 963  TEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVPGD 1022

Query: 1081 DYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAGEM 1260
            D +S+EAQKNATLFFNILLRS  ASKRVLKEYRLTREAF+WV+GEIESRFLQSLVA GEM
Sbjct: 1023 DLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPGEM 1082

Query: 1261 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPG 1440
            IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP 
Sbjct: 1083 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPD 1142

Query: 1441 VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDVDP 1620
            VSKTKE+AKNVQCALEYTTLRSVTQATEVWYDPDP STIIEEDV+FV SY+EMPD++V P
Sbjct: 1143 VSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEVAP 1202

Query: 1621 DKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIMND 1800
            +KISPWLLRIELNREMMVDKKL+MADI+ KIN EFD DLTCIFNDDNAEKLILRIRIMND
Sbjct: 1203 EKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMND 1262

Query: 1801 EAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKAEN 1980
            EAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK+GKVNKFDE+EGFK E 
Sbjct: 1263 EAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKPEV 1322

Query: 1981 EWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSY 2160
            EWMLDTEGVNLLAV+CHEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDGSY
Sbjct: 1323 EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1382

Query: 2161 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLR 2340
            VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+LR
Sbjct: 1383 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDFLR 1442

Query: 2341 GVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPY 2520
            GVTENIMLGQLAPIGTGDCALY+N++ML+ AIE+ LPSYME GL+FGMTP RSPI+GTPY
Sbjct: 1443 GVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME-GLDFGMTPSRSPITGTPY 1501

Query: 2521 HDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAF 2622
            HDGMMSPNY+LSPNLRLSP++DAQFSPYVGGMAF
Sbjct: 1502 HDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535


>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
            sativus]
          Length = 1853

 Score = 1555 bits (4025), Expect = 0.0
 Identities = 769/874 (87%), Positives = 826/874 (94%)
 Frame = +1

Query: 1    FLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEA 180
            FLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+ LE 
Sbjct: 663  FLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEP 722

Query: 181  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTAC 360
            EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTAC
Sbjct: 723  EPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 782

Query: 361  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGREGL 540
            VGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGREGL
Sbjct: 783  VGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 842

Query: 541  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLE 720
            IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ L+
Sbjct: 843  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD 902

Query: 721  SLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQLG 900
            SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRYQLG
Sbjct: 903  SLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLG 962

Query: 901  TEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVVGD 1080
            TEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKVV G+
Sbjct: 963  TEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGE 1022

Query: 1081 DYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAGEM 1260
            D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA GEM
Sbjct: 1023 DPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEM 1082

Query: 1261 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPG 1440
            IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKP 
Sbjct: 1083 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPE 1142

Query: 1441 VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDVDP 1620
             +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDP STIIEED++FV SY+EMPD+++ P
Sbjct: 1143 ANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAP 1202

Query: 1621 DKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIMND 1800
            +KISPWLLRIELNREMMVDKKL+MA+I+ KIN EFD DLTCIFNDDNAEKLILRIRIMND
Sbjct: 1203 EKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMND 1262

Query: 1801 EAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKAEN 1980
            EAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGFK E 
Sbjct: 1263 EAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEM 1322

Query: 1981 EWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSY 2160
            EWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDGSY
Sbjct: 1323 EWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1382

Query: 2161 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLR 2340
            VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+LR
Sbjct: 1383 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLR 1442

Query: 2341 GVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPY 2520
            GVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSPISGTPY
Sbjct: 1443 GVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGTPY 1501

Query: 2521 HDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAF 2622
            H+GMMSPNY+LSPNLRLSP+SDAQFSPYVGGMAF
Sbjct: 1502 HEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
            subunit RPB1-like [Cucumis sativus]
          Length = 1832

 Score = 1555 bits (4025), Expect = 0.0
 Identities = 769/874 (87%), Positives = 826/874 (94%)
 Frame = +1

Query: 1    FLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEA 180
            FLGHTQWLVNYWLLQNAFS+GIGDTIAD  TM KI+ETI+ AKNEV  LI+ AQE+ LE 
Sbjct: 663  FLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEP 722

Query: 181  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTAC 360
            EPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTAC
Sbjct: 723  EPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 782

Query: 361  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGREGL 540
            VGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGREGL
Sbjct: 783  VGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 842

Query: 541  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLE 720
            IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ L+
Sbjct: 843  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD 902

Query: 721  SLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQLG 900
            SLK+K+ +F  +++YE +  NW PNYMLPE VEDLKTIRE R+VF+AEVQKLEADRYQLG
Sbjct: 903  SLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLG 962

Query: 901  TEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVVGD 1080
            TEIATTG+NSWP+PVN+KRL+ NAQKTF++DFRR SDMHPMEIVEA+DKLQERLKVV G+
Sbjct: 963  TEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGE 1022

Query: 1081 DYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAGEM 1260
            D LS+EAQKNATLFFNILLRS  ASKRVL EYRLTREAF+WV+GEIESRFLQSLVA GEM
Sbjct: 1023 DPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEM 1082

Query: 1261 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPG 1440
            IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLKP 
Sbjct: 1083 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPE 1142

Query: 1441 VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDVDP 1620
             +KTKE+AK VQCALEYTTLRSVTQATEVWYDPDP STIIEED++FV SY+EMPD+++ P
Sbjct: 1143 ANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAP 1202

Query: 1621 DKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIMND 1800
            +KISPWLLRIELNREMMVDKKL+MA+I+ KIN EFD DLTCIFNDDNAEKLILRIRIMND
Sbjct: 1203 EKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMND 1262

Query: 1801 EAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKAEN 1980
            EAPKGEL DESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVNKFDENEGFK E 
Sbjct: 1263 EAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEM 1322

Query: 1981 EWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSY 2160
            EWMLDTEGVNLLAV+ HEDVDA RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDGSY
Sbjct: 1323 EWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1382

Query: 2161 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLR 2340
            VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+LR
Sbjct: 1383 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLR 1442

Query: 2341 GVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPY 2520
            GVTENIMLGQLAPIGTG CALY+N+EMLK AIE+ LPSY++ GL+FGMTP RSPISGTPY
Sbjct: 1443 GVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID-GLDFGMTPSRSPISGTPY 1501

Query: 2521 HDGMMSPNYMLSPNLRLSPVSDAQFSPYVGGMAF 2622
            H+GMMSPNY+LSPNLRLSP+SDAQFSPYVGGMAF
Sbjct: 1502 HEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535


>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
            gi|241940227|gb|EES13372.1| hypothetical protein
            SORBIDRAFT_07g003680 [Sorghum bicolor]
          Length = 1857

 Score = 1549 bits (4011), Expect = 0.0
 Identities = 765/875 (87%), Positives = 828/875 (94%), Gaps = 1/875 (0%)
 Frame = +1

Query: 1    FLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEA 180
            FLGHTQWLVNYWLLQN FS+GIGDTIAD  TM  I++TI KAK+EV ELI+ A EKQLEA
Sbjct: 662  FLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQLEA 721

Query: 181  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTAC 360
            EPGRTMMESFENRVNQVLNKARDDAGSSAQKSL+ESNNLKAMVTAGSKGSFINISQMTAC
Sbjct: 722  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTAC 781

Query: 361  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGREGL 540
            VGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGREGL
Sbjct: 782  VGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 841

Query: 541  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLE 720
            IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ L+
Sbjct: 842  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD 901

Query: 721  SLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQLG 900
            SLK+K+ +F+++++YE+D  NW PNYMLPE V+DLKTIRE R+VF+AEVQKLEADRYQLG
Sbjct: 902  SLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLG 961

Query: 901  TEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVVGD 1080
            TEIATTGDNSWP+PVN+KRL+ NAQKTFR+DFRRPSDMHPMEIVEAVDKLQERLKVV GD
Sbjct: 962  TEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVPGD 1021

Query: 1081 DYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAGEM 1260
            D +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA GEM
Sbjct: 1022 DPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEM 1081

Query: 1261 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPG 1440
            IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP 
Sbjct: 1082 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPE 1141

Query: 1441 VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDVDP 1620
            V++ KE AKNVQCALEYTTLRSVT ATE+WYDPDP  TIIEED EFV SY+EMPD+D+DP
Sbjct: 1142 VNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDIDP 1201

Query: 1621 DKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIMND 1800
            DKISPWLLRIELNREMMVDKKL+MADI+ KIN EFD DL+CIFNDDNA+KLILRIRI ND
Sbjct: 1202 DKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRITND 1261

Query: 1801 EAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKAEN 1980
            EAPKGE+ DESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIK GKVN F ++EGFKA N
Sbjct: 1262 EAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKAAN 1321

Query: 1981 EWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSY 2160
            EWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDGSY
Sbjct: 1322 EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1381

Query: 2161 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLR 2340
            VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+LR
Sbjct: 1382 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLR 1441

Query: 2341 GVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPY 2520
            GVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSPISGTPY
Sbjct: 1442 GVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPISGTPY 1500

Query: 2521 HDGMMSPNYMLSPNLRLSPV-SDAQFSPYVGGMAF 2622
            H+GMMSP+Y+LSPN+R SP+ +DA FSPYVG MAF
Sbjct: 1501 HEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535


>gb|AFW57310.1| RNA polymerase II large subunit family protein [Zea mays]
          Length = 1850

 Score = 1542 bits (3992), Expect = 0.0
 Identities = 758/875 (86%), Positives = 826/875 (94%), Gaps = 1/875 (0%)
 Frame = +1

Query: 1    FLGHTQWLVNYWLLQNAFSMGIGDTIADHDTMTKISETINKAKNEVNELIRAAQEKQLEA 180
            FLGHTQWLVNYWLLQN FS+GIGDTIAD  TM  I++TI+KAKN V ELI+ A EKQLEA
Sbjct: 662  FLGHTQWLVNYWLLQNGFSIGIGDTIADASTMETINDTISKAKNAVKELIKKAHEKQLEA 721

Query: 181  EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLAESNNLKAMVTAGSKGSFINISQMTAC 360
            EPGRTMMESFENRVNQVLNKARDDAGSSAQ SL+ESNNLKAMVTAGSKGSFINISQMTAC
Sbjct: 722  EPGRTMMESFENRVNQVLNKARDDAGSSAQNSLSESNNLKAMVTAGSKGSFINISQMTAC 781

Query: 361  VGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLSPQEFFFHAMGGREGL 540
            VGQQNVEGKRIPFGF+DRTLPHFTKDDYGPESRGFVENSYLRGL+PQEFFFHAMGGREGL
Sbjct: 782  VGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGL 841

Query: 541  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQPLE 720
            IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ L+
Sbjct: 842  IDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLD 901

Query: 721  SLKLKRSDFNDMYKYEIDHPNWNPNYMLPEAVEDLKTIREIRSVFDAEVQKLEADRYQLG 900
            SLK+K+ +F+++++YE+D  NW PNYMLPE V+DLKTIRE R+VF+AEVQKLEADRYQLG
Sbjct: 902  SLKMKKPEFDNVFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQLG 961

Query: 901  TEIATTGDNSWPLPVNIKRLVLNAQKTFRVDFRRPSDMHPMEIVEAVDKLQERLKVVVGD 1080
            +EI TTGDNSWP+PVN+KRL+ NAQKTF++DFRRPSDMHPMEIVEA+DKLQERLKVV GD
Sbjct: 962  SEITTTGDNSWPMPVNLKRLIWNAQKTFKIDFRRPSDMHPMEIVEAIDKLQERLKVVPGD 1021

Query: 1081 DYLSLEAQKNATLFFNILLRSALASKRVLKEYRLTREAFDWVVGEIESRFLQSLVAAGEM 1260
            D +S+EAQKNATLFFNILLRS  ASKRVLKEYRLT+EAF+WV+GEIESRFLQSLVA GEM
Sbjct: 1022 DAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPGEM 1081

Query: 1261 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPG 1440
            IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKP 
Sbjct: 1082 IGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPQ 1141

Query: 1441 VSKTKEKAKNVQCALEYTTLRSVTQATEVWYDPDPKSTIIEEDVEFVTSYFEMPDDDVDP 1620
            V++ KE AKNVQCALEYTTLRSVT ATE+WYDPDP  TIIEED EFV SY+EMPD+D+DP
Sbjct: 1142 VNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDTEFVQSYYEMPDEDIDP 1201

Query: 1621 DKISPWLLRIELNREMMVDKKLNMADISHKINAEFDSDLTCIFNDDNAEKLILRIRIMND 1800
            DKISPWLLRIELNREMMVDKKL+MADI+ KIN EFD DL+CIFNDDNA+KLILRIRI ND
Sbjct: 1202 DKISPWLLRIELNREMMVDKKLSMADIAEKINREFDDDLSCIFNDDNADKLILRIRITND 1261

Query: 1801 EAPKGELNDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKNGKVNKFDENEGFKAEN 1980
            EAPKGE+ DESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIK GKVN F +++GFKA N
Sbjct: 1262 EAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDDGFKAAN 1321

Query: 1981 EWMLDTEGVNLLAVICHEDVDASRTTSNHLIEVIEVLGIEAVRKALLDELRVVISFDGSY 2160
            EWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVR++LLDELRVVISFDGSY
Sbjct: 1322 EWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSY 1381

Query: 2161 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDYLR 2340
            VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+D+LR
Sbjct: 1382 VNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDHLR 1441

Query: 2341 GVTENIMLGQLAPIGTGDCALYMNEEMLKQAIEIPLPSYMEGGLEFGMTPGRSPISGTPY 2520
            GVTENIMLGQLAPIGTG CALY+N++ML+QAIE+ LPSY+E GL+FGMTP RSPI+GTPY
Sbjct: 1442 GVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE-GLDFGMTPARSPITGTPY 1500

Query: 2521 HDGMMSPNYMLSPNLRLSPV-SDAQFSPYVGGMAF 2622
            H+GMMSP+Y+LSPN+R SP+ +DA FSPYVG MAF
Sbjct: 1501 HEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535