BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00007915
         (3559 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymeras...  1292   0.0  
sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1282   0.0  
ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|2...  1205   0.0  
ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1194   0.0  
ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, ch...  1193   0.0  

>sp|P69242.1|RPOT3_NICSY RecName: Full=DNA-directed RNA polymerase 3, chloroplastic; AltName:
            Full=NsRpoT-C; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 3; Flags: Precursor
            gi|59800203|sp|P69243.1|RPO3A_TOBAC RecName:
            Full=DNA-directed RNA polymerase 3A, chloroplastic;
            AltName: Full=NictaRpoT3-syl; AltName: Full=T7
            bacteriophage-type single subunit RNA polymerase 3A;
            Flags: Precursor gi|21425641|emb|CAC82576.3| phage-type
            RNA polymerase [Nicotiana sylvestris]
            gi|21425679|emb|CAC95027.2| plastid RNA polymerase
            [Nicotiana tabacum] gi|24475541|dbj|BAC22693.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris] gi|24475543|dbj|BAC22694.1| T7
            bacteriophage-type single subunit RNA polymerase
            [Nicotiana sylvestris]
          Length = 977

 Score = 1292 bits (3343), Expect = 0.0
 Identities = 646/921 (70%), Positives = 751/921 (81%), Gaps = 14/921 (1%)
 Frame = +3

Query: 159  PRPPWRPRK---KFNFVSMSTPETPSFSRNTQFPSSSFPQNLKLHSLHKRPPLLPPPISD 329
            P   WR +K   +FNF  +   E    S+++  P+SSFP+ LKL       P++  PI++
Sbjct: 11   PTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLPTSSFPKTLKL-------PVIQMPINN 63

Query: 330  ----------ATDHNYPGSADHMSNLQVIPNGFPTNLTSESEGRVFIRDPPWIXXXXXXX 479
                      +TD N     + + NLQ I NG    LT ES  RVFI+DPPW+       
Sbjct: 64   NIQSQTTVCVSTDENL----EELVNLQKIANGV---LTKESNKRVFIQDPPWVSSLFMNS 116

Query: 480  XXXXXXXXXXXXXEFQEMERRKYY-LLRRRQVKAETEAWQNMVXXXXXXXXXXXXXKLAP 656
                         EF+E+ERR+ Y +LRRRQ+KAETEAW+ MV             KLAP
Sbjct: 117  LFVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAP 176

Query: 657  NLPYFKKLMLGWFQPFREAIEKEQNVRRSLKNKAAFAPFIDALPADKIAIIVMHKIMSLL 836
            NLPY KKL+LGWF+P R+AIEKEQN   ++K++AAFAP ID+LPADK+A+IVMHK+M LL
Sbjct: 177  NLPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLL 236

Query: 837  MMGGKGDRTVRVVEAAVQIGVAIEQEVRIQNFFKKEKSDQRRVVVAEGEEDPSKEVAILR 1016
            MMGGK +R V+VV+AAVQIG+A+E EVRI NF +K K  Q+ +  A+ +ED S+E  ILR
Sbjct: 237  MMGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSRETMILR 296

Query: 1017 QRVKRLIRRNRVNEVQMLLRSEEFESWGRDAQAKLGCCLVELLTQSAYVQPPIDQTADCP 1196
            +RVK LI+RNRV EV+ L++SEE ESWGRD QAKLGC L+ELLT++AYVQPP+DQ+AD P
Sbjct: 297  KRVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQPPVDQSADTP 356

Query: 1197 PEVRPAFRHIFKIAARVPGQTIVKKYGVIECDPLVLCGLDKTVRHMVIPYVPMLVPPRRW 1376
            P++RPAFRH+F+IA R PG++IVKKYGVIECDPLV+ G+D+TV+ M+IPYVPMLVPP++W
Sbjct: 357  PDIRPAFRHVFRIATRDPGKSIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKW 416

Query: 1377 KGYDKGGYLFLPSYLMRTHGSRKQQDAVRAVHPKQMQKVYEALDTLGTTKWRVNKRILSV 1556
            +GYDKGGYLFLPSYLMRTHGSR+QQDAVR+V  KQMQ+VYEALDTLG+TKWRVNKRILSV
Sbjct: 417  RGYDKGGYLFLPSYLMRTHGSRRQQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSV 476

Query: 1557 VESLWALGGDIAGLVSRENVPIPELLSDNEAEXXXXXXXXXXXXXXNQERHSQRCDLELK 1736
            VES+WA GG+IAGLV R++VPIPEL SD+  E              NQE HSQRCD ELK
Sbjct: 477  VESIWAGGGNIAGLVDRKDVPIPELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELK 536

Query: 1737 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWL 1916
            LSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WL
Sbjct: 537  LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 596

Query: 1917 KIHLANLYGGGVEKLSYDDRISFVENNIAEVLDSADNSLNGNRWWLKAEDPFQCLAACIN 2096
            KIHLA+LY GG+EKL YD R++FVEN+I ++LDSA+N LNGNRWWL AEDPFQCLAACIN
Sbjct: 597  KIHLASLYAGGIEKLCYDARLAFVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACIN 656

Query: 2097 LSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIA 2276
            LSEALKSSSPHTV SHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAGDKP+DVY+EIA
Sbjct: 657  LSEALKSSSPHTVFSHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIA 716

Query: 2277 ERVHKIMKRDSEKDPETDPNALLAKILIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 2456
             RV  I++ DS KDP TDPNALLAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL
Sbjct: 717  LRVDHIIRGDSIKDPATDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 776

Query: 2457 EEKGVIRDDKILFNAACYAARVTMAALEELFQAARAIMGWLGNCAKIIAQENQPVRWTTP 2636
            EEKG+I DD++LF A+CYAA+VT+AAL ELFQAAR  M WLG+CAK+IA ENQPVRWTTP
Sbjct: 777  EEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIASENQPVRWTTP 836

Query: 2637 LGLPVVQPYFKTQRHVIKTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAI 2816
            LGLPVVQPYFKTQRHVI+TSLQVLALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+
Sbjct: 837  LGLPVVQPYFKTQRHVIRTSLQVLALQREGDTVEVRKQRTAFPPNFVHSLDGSHMMMTAV 896

Query: 2817 ACRNAGLRFAGVHDSFWTHAC 2879
            ACR+AGL+FAGVHDSFWTHAC
Sbjct: 897  ACRDAGLQFAGVHDSFWTHAC 917



 Score = 99.4 bits (246), Expect = 6e-18
 Identities = 48/67 (71%), Positives = 52/67 (77%)
 Frame = +1

Query: 2950 SFWTHACDVDRMNQILRHKFVELYSTPILENLLESFQXXXXXXXXXXXXERGDFDLEEVL 3129
            SFWTHACDVD+MN+ILR KFVELYS PILE+LLESFQ            +RGDFDL EVL
Sbjct: 911  SFWTHACDVDQMNRILREKFVELYSMPILEDLLESFQNSYPALTFPPLPKRGDFDLVEVL 970

Query: 3130 ESPYFFN 3150
            ESPYFFN
Sbjct: 971  ESPYFFN 977


>sp|Q8L6J1.2|RPO3B_TOBAC RecName: Full=DNA-directed RNA polymerase 3B, chloroplastic; AltName:
            Full=NictaRpoT3-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 3B; Flags: Precursor
            gi|21425667|emb|CAC95021.2| chloroplast RNA polymerase
            [Nicotiana tabacum]
          Length = 977

 Score = 1282 bits (3318), Expect = 0.0
 Identities = 645/921 (70%), Positives = 748/921 (81%), Gaps = 14/921 (1%)
 Frame = +3

Query: 159  PRPPWRPRK---KFNFVSMSTPETPSFSRNTQFPSSSFPQNLKLHSLHKRPPLLPPPISD 329
            P   WR +K   +FNF  +   E    S+++   +SSFP+ LKL       P++  PI++
Sbjct: 11   PTSQWRTQKLPKRFNFYVIHNQEFGKLSQSSSLSTSSFPKTLKL-------PVIHMPINN 63

Query: 330  ---------ATDHNYPGSADHMSNLQVIPNGFPTNLTSESEGRVFIRDPPWIXXXXXXXX 482
                     +TD N     + + NLQ IPNGF   L  ES  RVFI+DPPW+        
Sbjct: 64   IQSQTTVCVSTDENL----EELVNLQKIPNGF---LNKESNKRVFIQDPPWVSSLFMNSL 116

Query: 483  XXXXXXXXXXXXEFQEMERRKYY-LLRRRQVKAETEAWQNMVXXXXXXXXXXXXXKLAPN 659
                        EF+E+ERR+ Y +LRRRQ+KAETEAW+ MV             KLAPN
Sbjct: 117  FVRAKQVQGVRREFREIERRRRYAMLRRRQIKAETEAWEQMVEEYRELEREMCEKKLAPN 176

Query: 660  LPYFKKLMLGWFQPFREAIEKEQNVRRSLKNKAAFAPFIDALPADKIAIIVMHKIMSLLM 839
            LPY KKL+LGWF+P R+AIEKEQN   ++K++AAFAP ID+LPADK+A+IVMHK+M LLM
Sbjct: 177  LPYVKKLLLGWFEPLRQAIEKEQNAETTVKHRAAFAPHIDSLPADKMAVIVMHKLMGLLM 236

Query: 840  MGGKGDRTVRVVEAAVQIGVAIEQEVRIQNFFKKEKSDQRRVVVAEGEEDPSKEVAILRQ 1019
            MGGK +R V+VV+AAVQIG+A+E EVRI NF +K K  Q+ +  A+ +ED SKE  ILR+
Sbjct: 237  MGGKEERCVQVVQAAVQIGMAVENEVRIHNFLEKTKKLQKHMTGAQSQEDMSKETMILRK 296

Query: 1020 RVKRLIRRNRVNEVQMLLRSEEFESWGRDAQAKLGCCLVELLTQSAYVQPPIDQTADCPP 1199
            RVK LI+RNRV EV+ L++SEE ESWGRD QAKLGC L+ELLT++AYVQ P+DQ+AD PP
Sbjct: 297  RVKSLIKRNRVVEVRKLMKSEEPESWGRDTQAKLGCRLLELLTETAYVQRPVDQSADTPP 356

Query: 1200 EVRPAFRHIFKIAARVPGQTIVKKYGVIECDPLVLCGLDKTVRHMVIPYVPMLVPPRRWK 1379
            ++RPAFRH+FKIA R PG+ IVKKYGVIECDPLV+ G+D+TV+ M+IPYVPMLVPP++W+
Sbjct: 357  DIRPAFRHVFKIATRDPGKNIVKKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWR 416

Query: 1380 GYDKGGYLFLPSYLMRTHGSRKQQDAVRAVHPKQMQKVYEALDTLGTTKWRVNKRILSVV 1559
            GYDKGGYLFLPSYLMRTHGSR+QQDAVR V  KQMQ+VYEALDTLG+TKWRVNKRIL+VV
Sbjct: 417  GYDKGGYLFLPSYLMRTHGSRRQQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVV 476

Query: 1560 ESLWALGGDIAGLVSRENVPIPELL-SDNEAEXXXXXXXXXXXXXXNQERHSQRCDLELK 1736
            ES+WA GG+IAGLV R++VPIPEL  SD+  E              NQE HSQRCD ELK
Sbjct: 477  ESIWAGGGNIAGLVDRKDVPIPELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELK 536

Query: 1737 LSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWL 1916
            LSVARK+KDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGL WL
Sbjct: 537  LSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWL 596

Query: 1917 KIHLANLYGGGVEKLSYDDRISFVENNIAEVLDSADNSLNGNRWWLKAEDPFQCLAACIN 2096
            KIHLA+LY GGVEKL YD R++FVEN+I ++LDSA+N LNGNRWWL AEDPFQCLAACIN
Sbjct: 597  KIHLASLYAGGVEKLCYDARLAFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACIN 656

Query: 2097 LSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIA 2276
            LSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVAG+KP+DVY+EIA
Sbjct: 657  LSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIA 716

Query: 2277 ERVHKIMKRDSEKDPETDPNALLAKILIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 2456
             RV  I++ DS KDP  DPNALLAK+LI QVDRKLVKQTVMTSVYGVTYVGAREQIKRRL
Sbjct: 717  LRVDHIIRGDSIKDPAIDPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRL 776

Query: 2457 EEKGVIRDDKILFNAACYAARVTMAALEELFQAARAIMGWLGNCAKIIAQENQPVRWTTP 2636
            EEKG+I DD++LF A+CYAA+VT+AAL ELFQAAR  M WLG+CAK+IA ENQPVRWTTP
Sbjct: 777  EEKGLIDDDRLLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVIALENQPVRWTTP 836

Query: 2637 LGLPVVQPYFKTQRHVIKTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAI 2816
            LGLPVVQPYFKTQRHVI+TSLQ+LALQREGD+VEVRKQRTAFPPNFVHSLDGSHMMMTA+
Sbjct: 837  LGLPVVQPYFKTQRHVIRTSLQILALQREGDAVEVRKQRTAFPPNFVHSLDGSHMMMTAV 896

Query: 2817 ACRNAGLRFAGVHDSFWTHAC 2879
            ACR+AGL+FAGVHDSFWTHAC
Sbjct: 897  ACRDAGLQFAGVHDSFWTHAC 917



 Score = 97.1 bits (240), Expect = 3e-17
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = +1

Query: 2950 SFWTHACDVDRMNQILRHKFVELYSTPILENLLESFQXXXXXXXXXXXXERGDFDLEEVL 3129
            SFWTHACDVD+MN+ILR KFVELYS PILE+LLE+FQ            +RGDF+L EVL
Sbjct: 911  SFWTHACDVDQMNRILREKFVELYSLPILEDLLENFQKSYPALTFPPLPKRGDFNLREVL 970

Query: 3130 ESPYFFN 3150
            ESPYFFN
Sbjct: 971  ESPYFFN 977


>ref|XP_002308414.1| predicted protein [Populus trichocarpa] gi|222854390|gb|EEE91937.1|
            predicted protein [Populus trichocarpa]
          Length = 982

 Score = 1205 bits (3118), Expect = 0.0
 Identities = 613/928 (66%), Positives = 718/928 (77%), Gaps = 14/928 (1%)
 Frame = +3

Query: 135  SSRAQFHQPRPPWRPRKKFNFVS-------MSTPETPSFSRNTQFPSSSFPQNLKLHSLH 293
            +S   F    P W   K   F         +S P + S S N    SSSFP N KL  L+
Sbjct: 2    ASTTPFSIQHPTWTTSKTLKFHEPYKNLHFLSNPSSHSLS-NPSLSSSSFPLNPKLSILN 60

Query: 294  KRPPLLPPPISDAT------DHNYPGSADHMSNLQVIPNGFPTNLTSESEGRVFIRDPPW 455
              PPLL  P+ D++      D   P   +H     +I   F   +  ES  RVFIRD PW
Sbjct: 61   --PPLLFHPLHDSSHDRLLEDFEIPTINNHQKLETLIK--FDQIVHGESSKRVFIRDSPW 116

Query: 456  IXXXXXXXXXXXXXXXXXXXXEFQEMERRKYYLLRRRQVKAETEAWQNMVXXXXXXXXXX 635
            I                    E +++E+RKY LLRRRQ++ ETEAW+ M           
Sbjct: 117  ISALYWKGTHKIANKKVKL--ELKDIEKRKYNLLRRRQIREETEAWERMAEEYTGLVKEM 174

Query: 636  XXXKLAPNLPYFKKLMLGWFQPFREAIEKEQNVRRSLKNKAAFAPFIDALPADKIAIIVM 815
               KLAPNLPY K L LGWF+P +EAIE+EQ + +S K K+AF+P I+ LPADK+A+IVM
Sbjct: 175  CERKLAPNLPYVKSLFLGWFEPLKEAIEREQKLEKSKKQKSAFSPNIELLPADKMAVIVM 234

Query: 816  HKIMSLLMMGGKGDRTVRVVEAAVQIGVAIEQEVRIQNFFKKEKSDQRRVVVAEGEEDPS 995
            HK+M L+M+G + D  VRVV+AAVQIG+AIEQEVRI NF +K K+ QR+  + + +E   
Sbjct: 235  HKMMGLVMVGHE-DGCVRVVQAAVQIGIAIEQEVRIHNFLEKTKNHQRKKTMHDVQESMD 293

Query: 996  KEVAILRQRVKRLIRRNRVNEVQMLLRSEEFESWGRDAQAKLGCCLVELLTQSAYVQPPI 1175
            KE  +LR+RV  LIRR R+ EVQ L+  +E + W RD QAKLG  L+ELLT++AYVQPP+
Sbjct: 294  KEKEMLRKRVNSLIRRKRLMEVQNLVIQDETKPWNRDKQAKLGSRLIELLTETAYVQPPV 353

Query: 1176 DQTADCPPEVRPAFRHIFKIAARVPGQTIVKKYGVIECDPLVLCGLDKTVRHMVIPYVPM 1355
            DQ+   PP+VRPAFRHIFK   + PGQ  VKKYGVIECDPL+L GLD T +HM+IPY PM
Sbjct: 354  DQSEGIPPDVRPAFRHIFKSVTKNPGQKTVKKYGVIECDPLILTGLDGTAKHMLIPYFPM 413

Query: 1356 LVPPRRWKGYDKGGYLFLPSYLMRTHGSRKQQDAVRAVHPKQMQKVYEALDTLGTTKWRV 1535
            LVPP++W+GYDKGG+LFLPSY+MRTHGSR+QQDAVR+V  KQMQKV+EALDTLG TKWRV
Sbjct: 414  LVPPKKWRGYDKGGHLFLPSYIMRTHGSRQQQDAVRSVPGKQMQKVFEALDTLGNTKWRV 473

Query: 1536 NKRILSVVESLWALGGDIAGLVSRENVPIPELLS-DNEAEXXXXXXXXXXXXXXNQERHS 1712
            N ++L VVE +WA GG+ AGLV+R ++PIPE LS D+  E              NQERHS
Sbjct: 474  NGKVLDVVERIWASGGNNAGLVNRGDIPIPEKLSSDDLTEIQKWKWSVRKAKKINQERHS 533

Query: 1713 QRCDLELKLSVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPL 1892
            QRCD ELKLSVARK+KDEEGFYYPHNLDFRGRAYPMHPHL HLSSDLCRG+LEFAEGRPL
Sbjct: 534  QRCDTELKLSVARKLKDEEGFYYPHNLDFRGRAYPMHPHLTHLSSDLCRGVLEFAEGRPL 593

Query: 1893 GKSGLCWLKIHLANLYGGGVEKLSYDDRISFVENNIAEVLDSADNSLNGNRWWLKAEDPF 2072
            GKSGLCWLKIHLANLY GGVEKLS+D R++FVEN+++E+ DSA+N +NG RWWL AEDPF
Sbjct: 594  GKSGLCWLKIHLANLYSGGVEKLSHDGRLAFVENHLSEIFDSAENPVNGKRWWLTAEDPF 653

Query: 2073 QCLAACINLSEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKP 2252
            QCLAACINLSEALKS+SPHTVISHLPIHQDGSCNGLQHYAALGRDS EAAAVNLVA +KP
Sbjct: 654  QCLAACINLSEALKSASPHTVISHLPIHQDGSCNGLQHYAALGRDSQEAAAVNLVAAEKP 713

Query: 2253 SDVYSEIAERVHKIMKRDSEKDPETDPNALLAKILIGQVDRKLVKQTVMTSVYGVTYVGA 2432
            SDVYSEIA RVH+I++RDS KDP T+P+ALLAK+LI +VDRKLVKQTVMTSVYGVTYVGA
Sbjct: 714  SDVYSEIATRVHEIIRRDSNKDPATNPHALLAKVLIDEVDRKLVKQTVMTSVYGVTYVGA 773

Query: 2433 REQIKRRLEEKGVIRDDKILFNAACYAARVTMAALEELFQAARAIMGWLGNCAKIIAQEN 2612
            REQIKRRLEEKG I DD++LF+AACYAA+VT+ AL ELFQAAR IMGWLG+CAK+IA E+
Sbjct: 774  REQIKRRLEEKGHITDDRVLFSAACYAAKVTLTALGELFQAARDIMGWLGDCAKVIASED 833

Query: 2613 QPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDG 2792
            QPVRWTTPLGLPVVQPY+KTQRH+I+TSLQVLALQREG SV+VRKQRTAFPPNFVHSLDG
Sbjct: 834  QPVRWTTPLGLPVVQPYYKTQRHLIRTSLQVLALQREGSSVQVRKQRTAFPPNFVHSLDG 893

Query: 2793 SHMMMTAIACRNAGLRFAGVHDSFWTHA 2876
            SHMMMTA+ACR+A LRFAGVHDSFWTHA
Sbjct: 894  SHMMMTAVACRDADLRFAGVHDSFWTHA 921



 Score = 90.5 bits (223), Expect = 3e-15
 Identities = 44/67 (65%), Positives = 48/67 (71%)
 Frame = +1

Query: 2950 SFWTHACDVDRMNQILRHKFVELYSTPILENLLESFQXXXXXXXXXXXXERGDFDLEEVL 3129
            SFWTHA D D MN+ILR KFVELY+ PILENLLE FQ            ERG+FDL+EVL
Sbjct: 916  SFWTHARDADLMNRILREKFVELYNMPILENLLEDFQTSYPTLKFPSLPERGNFDLQEVL 975

Query: 3130 ESPYFFN 3150
             SPYFFN
Sbjct: 976  RSPYFFN 982


>ref|XP_002274521.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic [Vitis
            vinifera]
          Length = 979

 Score = 1194 bits (3090), Expect = 0.0
 Identities = 600/896 (66%), Positives = 702/896 (78%), Gaps = 2/896 (0%)
 Frame = +3

Query: 198  VSMSTPETPSFSRNTQFPSSSFPQNLKLHSLHKRPPLLPPPISDATDHNYPGSADHMSNL 377
            +S ++  + SF  N   PS S     + H+L    PL P        +N   +    SN+
Sbjct: 47   ISKNSLSSSSFRHNFHSPSHSSNSEAQCHAL----PLSPT-------NNSIETLQDSSNI 95

Query: 378  QVIPNGFPTNLTSESEGRVFIRDPPWIXXXXXXXXXXXXXXXXXXXX-EFQEMERRKYYL 554
            QV           ES  R+F++DPPWI                     EF+E ERR Y L
Sbjct: 96   QV----------KESIPRIFVQDPPWISSFLFHDWCERNRRTGQNVKLEFRETERRNYGL 145

Query: 555  LRRRQVKAETEAWQNMVXXXXXXXXXXXXXKLAPNLPYFKKLMLGWFQPFREAIEKEQNV 734
            LRRRQVKAETEAW+ MV             KLAPNLPY K L LGWF+P REAI+KEQ  
Sbjct: 146  LRRRQVKAETEAWERMVEEYREIEREMCEKKLAPNLPYVKALFLGWFEPLREAIDKEQRA 205

Query: 735  RRSLKNKAAFAPFIDALPADKIAIIVMHKIMSLLMMGGKGDRTVRVVEAAVQIGVAIEQE 914
            +R+ K KAA+AP I+ LPADK+A+IVMHK+M L+MMG + +  VRVV+AAVQIG+AIEQE
Sbjct: 206  QRTKKQKAAYAPHIELLPADKMAVIVMHKMMGLVMMGHE-EGCVRVVQAAVQIGMAIEQE 264

Query: 915  VRIQNFFKKEKSDQRRVVVAEGEEDPSKEVAILRQRVKRLIRRNRVNEVQMLLRSEEFES 1094
            VRI +F +K K+ +R   V   +E   +E  ILR+RVK  IR+ ++ EVQ L+++EE   
Sbjct: 265  VRIHSFLEKTKNFERHKTVGHSQEG-LREKEILRKRVKSFIRKKKIIEVQKLVKNEEITP 323

Query: 1095 WGRDAQAKLGCCLVELLTQSAYVQPPIDQTADCPPEVRPAFRHIFKIAARVPGQTIVKKY 1274
            WGRD QAKLG  L+ELLT++AYVQ P++Q+ADCPP+VRPAFRH FK   +  GQ   +KY
Sbjct: 324  WGRDTQAKLGSRLIELLTETAYVQTPVNQSADCPPDVRPAFRHTFKTVTKESGQKDWRKY 383

Query: 1275 GVIECDPLVLCGLDKTVRHMVIPYVPMLVPPRRWKGYDKGGYLFLPSYLMRTHGSRKQQD 1454
            GVIECDPLVL GLD+T +HMVIPYVPML+PP++WKGYDKGGYLFLPSY+MRTHGSRKQQD
Sbjct: 384  GVIECDPLVLIGLDRTAKHMVIPYVPMLIPPKKWKGYDKGGYLFLPSYVMRTHGSRKQQD 443

Query: 1455 AVRAVHPKQMQKVYEALDTLGTTKWRVNKRILSVVESLWALGGDIAGLVSRENVPIPELL 1634
            AV++V  +Q+QKV+EALDTLG TKWR+N+R+LSVVES+WA GG++ GLV RENVP+PE  
Sbjct: 444  AVKSVPRRQLQKVFEALDTLGNTKWRINRRVLSVVESIWARGGNLGGLVDRENVPLPEKP 503

Query: 1635 SDNE-AEXXXXXXXXXXXXXXNQERHSQRCDLELKLSVARKMKDEEGFYYPHNLDFRGRA 1811
            S  +  E              NQERHS RCD E+KLSVARKMKDEEGFYYPHNLDFRGRA
Sbjct: 504  STEDLTEIQNWKWNARKAKKINQERHSLRCDTEIKLSVARKMKDEEGFYYPHNLDFRGRA 563

Query: 1812 YPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLKIHLANLYGGGVEKLSYDDRISFVE 1991
            YPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL WLKI LANLY GGVEKLSYD R++FV+
Sbjct: 564  YPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLRWLKIQLANLYAGGVEKLSYDGRLAFVD 623

Query: 1992 NNIAEVLDSADNSLNGNRWWLKAEDPFQCLAACINLSEALKSSSPHTVISHLPIHQDGSC 2171
            N++ +V DSADN LNGNRWWL AEDPFQCLAACINLSEAL+SSSPHTVISHLPIHQDGSC
Sbjct: 624  NHLDDVFDSADNPLNGNRWWLTAEDPFQCLAACINLSEALRSSSPHTVISHLPIHQDGSC 683

Query: 2172 NGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAERVHKIMKRDSEKDPETDPNALLAK 2351
            NGLQHYAALGR+S EA+AVNLVAG+KP+DVYSEIA RVH+IMKRDS KDP TDP ALLAK
Sbjct: 684  NGLQHYAALGRNSLEASAVNLVAGEKPADVYSEIAARVHEIMKRDSNKDPATDPKALLAK 743

Query: 2352 ILIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGVIRDDKILFNAACYAARVTMA 2531
            +LIGQVDRKLVKQTVMTSVYGVTY+GAREQIKRRL EKG+I D+++LF AACYAA+VT+A
Sbjct: 744  VLIGQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLAEKGLITDERLLFTAACYAAKVTLA 803

Query: 2532 ALEELFQAARAIMGWLGNCAKIIAQENQPVRWTTPLGLPVVQPYFKTQRHVIKTSLQVLA 2711
            AL E+FQAAR IM WLG CAK+IA ENQPV+WTTPLGLPV+QPY K++RH+I+TSLQVLA
Sbjct: 804  ALGEIFQAARDIMAWLGECAKVIASENQPVQWTTPLGLPVIQPYCKSERHLIRTSLQVLA 863

Query: 2712 LQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIACRNAGLRFAGVHDSFWTHAC 2879
            LQREG  V +RKQRTAFPPNFVHSLDGSHMMMTA+ACR+AGL FAGVHDSFWTHAC
Sbjct: 864  LQREGSVVVIRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLCFAGVHDSFWTHAC 919



 Score =  102 bits (254), Expect = 7e-19
 Identities = 49/67 (73%), Positives = 52/67 (77%)
 Frame = +1

Query: 2950 SFWTHACDVDRMNQILRHKFVELYSTPILENLLESFQXXXXXXXXXXXXERGDFDLEEVL 3129
            SFWTHACDVD+MNQILR KFVELYS PILENLLESFQ            +RG+FDL EVL
Sbjct: 913  SFWTHACDVDKMNQILREKFVELYSMPILENLLESFQTSHPTLTFPPLPDRGNFDLREVL 972

Query: 3130 ESPYFFN 3150
            ESPYFFN
Sbjct: 973  ESPYFFN 979


>ref|XP_004162698.1| PREDICTED: DNA-directed RNA polymerase 3, chloroplastic-like [Cucumis
            sativus]
          Length = 975

 Score = 1193 bits (3087), Expect = 0.0
 Identities = 595/920 (64%), Positives = 720/920 (78%), Gaps = 2/920 (0%)
 Frame = +3

Query: 126  FVPSSRAQFHQPRPPWRPRKKFNFVSMSTPETPSFSRNTQFPSSSFPQNLKL--HSLHKR 299
            F P+ +A  H      +P K++     + P   S + N+   S SFP N      SLH +
Sbjct: 7    FFPTLQAPIHGSNAWKKPTKRWKCERKTHPSFTS-TFNSPLSSVSFPVNFDSTSQSLHLQ 65

Query: 300  PPLLPPPISDATDHNYPGSADHMSNLQVIPNGFPTNLTSESEGRVFIRDPPWIXXXXXXX 479
            P      ++D+   N+  + D+  NLQ+  +        ES  R+FI+DPPWI       
Sbjct: 66   P------LADSVHENFTETLDNSMNLQIPISEIHQITRGESSKRIFIQDPPWIASLFLKG 119

Query: 480  XXXXXXXXXXXXXEFQEMERRKYYLLRRRQVKAETEAWQNMVXXXXXXXXXXXXXKLAPN 659
                         EF E+E+RKY LLRRRQ+KAETEAW+ MV             KLAPN
Sbjct: 120  LYKCVQKEVKL--EFMEIEKRKYNLLRRRQIKAETEAWEKMVEEYKELEREMCEKKLAPN 177

Query: 660  LPYFKKLMLGWFQPFREAIEKEQNVRRSLKNKAAFAPFIDALPADKIAIIVMHKIMSLLM 839
            LPY KKL LGWF+P + AIE+EQ  +RS K KAAFAP I+ L ADK+A+IVM+K+M LLM
Sbjct: 178  LPYVKKLFLGWFEPLKNAIEEEQKTQRSKKQKAAFAPHIELLSADKMAVIVMYKMMGLLM 237

Query: 840  MGGKGDRTVRVVEAAVQIGVAIEQEVRIQNFFKKEKSDQRRVVVAEGEEDPSKEVAILRQ 1019
            M  + D  V+VV+AAVQIG AIEQEVRIQ+  +K +S+QR  V A+  E  +KE  +LR+
Sbjct: 238  MAAQ-DGCVQVVQAAVQIGGAIEQEVRIQSILEKARSNQRTKVRAD-TECLTKEKEVLRK 295

Query: 1020 RVKRLIRRNRVNEVQMLLRSEEFESWGRDAQAKLGCCLVELLTQSAYVQPPIDQTADCPP 1199
            +V  LIRR ++ EVQ LL+ EEF++WGRD QAKLG  L+ELL +SA++QPP+ Q+AD PP
Sbjct: 296  QVNGLIRRRKLKEVQKLLKKEEFKAWGRDTQAKLGSRLIELLIESAFIQPPVSQSADSPP 355

Query: 1200 EVRPAFRHIFKIAARVPGQTIVKKYGVIECDPLVLCGLDKTVRHMVIPYVPMLVPPRRWK 1379
            ++RPAF H FK  A+ PGQ  VKKYGV+ECDP+VL GLD+T +HM+IPY+PMLVPP++WK
Sbjct: 356  DIRPAFWHGFKPVAKTPGQNFVKKYGVVECDPIVLAGLDRTAKHMLIPYIPMLVPPKKWK 415

Query: 1380 GYDKGGYLFLPSYLMRTHGSRKQQDAVRAVHPKQMQKVYEALDTLGTTKWRVNKRILSVV 1559
            GYDKGG+ FLPSY+MRTHGS +QQDA++ +  KQMQKV+EALD LG+TKWRVN+ +LSVV
Sbjct: 416  GYDKGGHFFLPSYVMRTHGSSRQQDAMKNISGKQMQKVFEALDMLGSTKWRVNRSVLSVV 475

Query: 1560 ESLWALGGDIAGLVSRENVPIPELLSDNEAEXXXXXXXXXXXXXXNQERHSQRCDLELKL 1739
            ESLWA GG+ AGLV R++VPIPE    +  E              NQE HSQRCD+ELKL
Sbjct: 476  ESLWAQGGNTAGLVDRKDVPIPEKPLGDLTEMQEWRWSMKKAKKINQELHSQRCDVELKL 535

Query: 1740 SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLCWLK 1919
            SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRG+LEFAEGRPLGKSGL WLK
Sbjct: 536  SVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGVLEFAEGRPLGKSGLHWLK 595

Query: 1920 IHLANLYGGGVEKLSYDDRISFVENNIAEVLDSADNSLNGNRWWLKAEDPFQCLAACINL 2099
            IHLANLY GGVEKLSYD+R++FV++++  + DSA N +NG+RWWL AEDPFQCLAAC+NL
Sbjct: 596  IHLANLYAGGVEKLSYDERLAFVDDHLDNIFDSASNPVNGDRWWLTAEDPFQCLAACMNL 655

Query: 2100 SEALKSSSPHTVISHLPIHQDGSCNGLQHYAALGRDSFEAAAVNLVAGDKPSDVYSEIAE 2279
            SEALKSS+PHTVIS+LPIHQDGSCNGLQHYAALGRD+ EAAAVNLVAG+KP+DVYSEIA 
Sbjct: 656  SEALKSSAPHTVISYLPIHQDGSCNGLQHYAALGRDTLEAAAVNLVAGEKPADVYSEIAA 715

Query: 2280 RVHKIMKRDSEKDPETDPNALLAKILIGQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLE 2459
            RVH IM RD+ KDP T+PNA LAK+LI QVDRKLVKQTVMTSVYGVTY+GAREQIKRRLE
Sbjct: 716  RVHTIMIRDASKDPTTNPNASLAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLE 775

Query: 2460 EKGVIRDDKILFNAACYAARVTMAALEELFQAARAIMGWLGNCAKIIAQENQPVRWTTPL 2639
            EKG+I DD++ F A+CYAA+VT++AL E+F+AAR IMGWLG+CAK+IA++NQPVRWTTPL
Sbjct: 776  EKGLISDDRLRFRASCYAAKVTLSALGEIFEAARGIMGWLGDCAKVIAKDNQPVRWTTPL 835

Query: 2640 GLPVVQPYFKTQRHVIKTSLQVLALQREGDSVEVRKQRTAFPPNFVHSLDGSHMMMTAIA 2819
            GLPVVQPY+K++RH+I+TSLQVLALQREG+ V+VRKQRTAFPPNFVHSLDGSHMM+TA+A
Sbjct: 836  GLPVVQPYYKSERHLIRTSLQVLALQREGNLVDVRKQRTAFPPNFVHSLDGSHMMLTALA 895

Query: 2820 CRNAGLRFAGVHDSFWTHAC 2879
            CR+AGLRFAGVHDSFWTHAC
Sbjct: 896  CRDAGLRFAGVHDSFWTHAC 915



 Score = 95.5 bits (236), Expect = 9e-17
 Identities = 45/67 (67%), Positives = 50/67 (74%)
 Frame = +1

Query: 2950 SFWTHACDVDRMNQILRHKFVELYSTPILENLLESFQXXXXXXXXXXXXERGDFDLEEVL 3129
            SFWTHACDVDRMN ILR KFVELYS P+LE+LLE F+             RGDFDL+EVL
Sbjct: 909  SFWTHACDVDRMNLILREKFVELYSMPVLESLLEGFETTYPGLTFPSLPGRGDFDLQEVL 968

Query: 3130 ESPYFFN 3150
            +SPYFFN
Sbjct: 969  KSPYFFN 975