BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Salvia21_contig00004786
         (3704 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1434   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1432   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1428   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1425   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1423   0.0  

>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1434 bits (3711), Expect = 0.0
 Identities = 722/1011 (71%), Positives = 809/1011 (80%), Gaps = 32/1011 (3%)
 Frame = +1

Query: 166  MWRHLSKQSCLRRFKILKESHPSINAFSAVKYSQNSILCEEDMQFQPQIGVNTGSSGLGF 345
            MWR++SKQ+  R+F+    SH S    + + +SQ S    +    Q     +T +  LG 
Sbjct: 1    MWRYISKQAYSRKFR---NSHDS----ALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 346  FQGTILRQ------------EHDVGPPKYGFP-------------------SDSLRFTRG 432
             Q +I  +            E     P  G                     S SL F R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 433  YAAAAEALVSTSXXXXXXXXXXXXXXNKEIDAKSPEIQGRRQQQKMVGGMGLGKYNILRR 612
            Y +AAEA+ STS              NKE +A    +Q +  Q K +GGMG+GKYN+LRR
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPK--QPKTIGGMGVGKYNLLRR 171

Query: 613  RQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDTCQE 792
            RQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ  C E
Sbjct: 172  RQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDE 231

Query: 793  GKNRAAYAPYFDQLPADMMAVITMHKLMALLMTGGGNGSARVVQAACHIGEAIEHEVRIH 972
            GKNR AYAP+FDQLPA+MMAVITMHKLM LLMTGGG GSARVVQAA HIGEAIEHE RIH
Sbjct: 232  GKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIH 291

Query: 973  KFLENCKRKNSLNRTCDEEPA-AAKEQERXXXXXXXXXXXXXXXXXRRIVSRQDDLKAWG 1149
            +FLE  K+ N+L+   ++ P    KE+ER                 R+IV +QDD K WG
Sbjct: 292  RFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351

Query: 1150 QDAQVKVGCRLIQLLMDTAYIQPPVDQMDDTPPDIRPAFVHTLKSVETLKGTRRYGVIEC 1329
            QD  VKVGCRLIQ+LM+TAYIQPP DQ+DD PPDIRPAFVHTLK+VET+KG+RRYGVI+C
Sbjct: 352  QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQC 411

Query: 1330 DPLVRKGLEKTARHXXXXXXXXXXXXXNWTGYERGAYLFLPSYIMRTHGAKQQREAVKRT 1509
            DPLVRKGL+KTARH             +W GY++GAYLFLPSYIMRTHGAKQQREAVKR 
Sbjct: 412  DPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRV 471

Query: 1510 PKEQLEPVYQALNTLGNTKWRVNKRILSLVDRIWANGGQLADLVDREDVPLPEEPDTEDE 1689
            PK+QLEPV+QAL+TLGNTKWR+N+++L +VDRIWA+GG+LADLVDREDVPLPEEPD EDE
Sbjct: 472  PKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDE 531

Query: 1690 SEIXXXXXXXXXXXXENSERHSQRCDIELKLTVARKMKDEEGFYYPHNLDFRGRAYPMHP 1869
            ++I            EN ERHSQRCDIELKL VARKMKDE+GFYYPHNLDFRGRAYPMHP
Sbjct: 532  AQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHP 591

Query: 1870 YLNHLGSDLCRGILEFAEARPLGKSGLRWLKIHLANLYGGGVDKFPYEGRVSFTENHLED 2049
            YLNHLGSDLCRGILEFAE RPLGKSGLRWLKIHLAN+YGGGVDK  YEGRV+F+ENH+ED
Sbjct: 592  YLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVED 651

Query: 2050 IFDSADRPLEGRRWWLGAEDPFQCLATCMSLSEALRSPYPETALSHIPVHQDGSCNGLQH 2229
            IFDSA+RPLEG+RWWLGAEDPFQCLATC++++EALRSP PETA+S++P+HQDGSCNGLQH
Sbjct: 652  IFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQH 711

Query: 2230 YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNVNRARLLIDQ 2409
            YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVL+IMK DAA DPA DPNV RARLLI+Q
Sbjct: 712  YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ 771

Query: 2410 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERHAMDDDAELFACACYAARTTLTALGEM 2589
            VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  ++DD ELFA ACYAA+TTLTALGEM
Sbjct: 772  VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEM 831

Query: 2590 FEAARGIMGWLGDCAKIIATENEPVRWTTPLGLPVVQPYRKLGKHMIKTSLQVLTLQRET 2769
            FEAAR IM WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+H+IKTSLQ+LTLQRET
Sbjct: 832  FEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRET 891

Query: 2770 DKVMTKRQRTAFPPNFVHSLDGSHMMMTAIACSQAGLSFAGVHDSYWTHACDVDQMNKIL 2949
            DKVM KRQRTAFPPNFVHSLDGSHMMMTAIAC ++GLSFAGVHDSYWTHA DVDQMNKIL
Sbjct: 892  DKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKIL 951

Query: 2950 REKFVELYDAPILENLLESFEKSFPGLNFPSLPERGDFDLKDVLDSTYFFN 3102
            REKFVELYDAPILENLLESF++SFP L FP LPERGDFDL++VL+S YFFN
Sbjct: 952  REKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1432 bits (3706), Expect = 0.0
 Identities = 721/1011 (71%), Positives = 808/1011 (79%), Gaps = 32/1011 (3%)
 Frame = +1

Query: 166  MWRHLSKQSCLRRFKILKESHPSINAFSAVKYSQNSILCEEDMQFQPQIGVNTGSSGLGF 345
            MWR++SK +  R+F+    SH S    + + +SQ S    +    Q     +T +  LG 
Sbjct: 1    MWRYISKHAYSRKFR---NSHDS----ALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 346  FQGTILRQ------------EHDVGPPKYGFP-------------------SDSLRFTRG 432
             Q +I  +            E     P  G                     S SL F R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 433  YAAAAEALVSTSXXXXXXXXXXXXXXNKEIDAKSPEIQGRRQQQKMVGGMGLGKYNILRR 612
            Y +AAEA+ STS              NKE +A    +Q +  Q K +GGMG+GKYN+LRR
Sbjct: 114  YGSAAEAIASTSEEDIDEIQELIEEMNKENEALKTNLQPK--QPKTIGGMGVGKYNLLRR 171

Query: 613  RQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDTCQE 792
            RQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ  C E
Sbjct: 172  RQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDE 231

Query: 793  GKNRAAYAPYFDQLPADMMAVITMHKLMALLMTGGGNGSARVVQAACHIGEAIEHEVRIH 972
            GKNR AYAP+FDQLPA+MMAVITMHKLM LLMTGGG GSARVVQAA HIGEAIEHE RIH
Sbjct: 232  GKNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIH 291

Query: 973  KFLENCKRKNSLNRTCDEEPA-AAKEQERXXXXXXXXXXXXXXXXXRRIVSRQDDLKAWG 1149
            +FLE  K+ N+L+   ++ P    KE+ER                 R+IV +QDD K WG
Sbjct: 292  RFLEKTKKSNALSGDLEDTPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351

Query: 1150 QDAQVKVGCRLIQLLMDTAYIQPPVDQMDDTPPDIRPAFVHTLKSVETLKGTRRYGVIEC 1329
            QD  VKVGCRLIQ+LM+TAYIQPP DQ+DD PPDIRPAFVHTLK+VET+KG+RRYGVI+C
Sbjct: 352  QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQC 411

Query: 1330 DPLVRKGLEKTARHXXXXXXXXXXXXXNWTGYERGAYLFLPSYIMRTHGAKQQREAVKRT 1509
            DPLVRKGL+KTARH             +W GY++GAYLFLPSYIMRTHGAKQQREAVKR 
Sbjct: 412  DPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRV 471

Query: 1510 PKEQLEPVYQALNTLGNTKWRVNKRILSLVDRIWANGGQLADLVDREDVPLPEEPDTEDE 1689
            PK+QLEPV+QAL+TLGNTKWR+N+++L +VDRIWA+GG+LADLVDREDVPLPEEPD EDE
Sbjct: 472  PKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDE 531

Query: 1690 SEIXXXXXXXXXXXXENSERHSQRCDIELKLTVARKMKDEEGFYYPHNLDFRGRAYPMHP 1869
            ++I            EN ERHSQRCDIELKL VARKMKDE+GFYYPHNLDFRGRAYPMHP
Sbjct: 532  AQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHP 591

Query: 1870 YLNHLGSDLCRGILEFAEARPLGKSGLRWLKIHLANLYGGGVDKFPYEGRVSFTENHLED 2049
            YLNHLGSDLCRGILEFAE RPLGKSGLRWLKIHLAN+YGGGVDK  YEGRV+F+ENH+ED
Sbjct: 592  YLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVED 651

Query: 2050 IFDSADRPLEGRRWWLGAEDPFQCLATCMSLSEALRSPYPETALSHIPVHQDGSCNGLQH 2229
            IFDSA+RPLEG+RWWLGAEDPFQCLATC++++EALRSP PETA+S++P+HQDGSCNGLQH
Sbjct: 652  IFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQH 711

Query: 2230 YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNVNRARLLIDQ 2409
            YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVL+IMK DAA DPA DPNV RARLLI+Q
Sbjct: 712  YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ 771

Query: 2410 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERHAMDDDAELFACACYAARTTLTALGEM 2589
            VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  ++DD ELFA ACYAA+TTLTALGEM
Sbjct: 772  VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEM 831

Query: 2590 FEAARGIMGWLGDCAKIIATENEPVRWTTPLGLPVVQPYRKLGKHMIKTSLQVLTLQRET 2769
            FEAAR IM WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+H+IKTSLQ+LTLQRET
Sbjct: 832  FEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRET 891

Query: 2770 DKVMTKRQRTAFPPNFVHSLDGSHMMMTAIACSQAGLSFAGVHDSYWTHACDVDQMNKIL 2949
            DKVM KRQRTAFPPNFVHSLDGSHMMMTAIAC ++GLSFAGVHDSYWTHA DVDQMNKIL
Sbjct: 892  DKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKIL 951

Query: 2950 REKFVELYDAPILENLLESFEKSFPGLNFPSLPERGDFDLKDVLDSTYFFN 3102
            REKFVELYDAPILENLLESF++SFP L FP LPERGDFDL++VL+S YFFN
Sbjct: 952  REKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1428 bits (3696), Expect = 0.0
 Identities = 720/1011 (71%), Positives = 807/1011 (79%), Gaps = 32/1011 (3%)
 Frame = +1

Query: 166  MWRHLSKQSCLRRFKILKESHPSINAFSAVKYSQNSILCEEDMQFQPQIGVNTGSSGLGF 345
            MWR++SKQ+  R+F+    SH S    + + +SQ S    +    Q     +T +  LG 
Sbjct: 1    MWRYISKQAYSRKFR---NSHDS----ALLGFSQYSSSFGKTRPLQCLCEESTTNPNLGL 53

Query: 346  FQGTILRQ------------EHDVGPPKYGFP-------------------SDSLRFTRG 432
             Q +I  +            E     P  G                     S SL F R 
Sbjct: 54   SQNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSLFSSVKGDFRVCGKRGSGSLGFLRS 113

Query: 433  YAAAAEALVSTSXXXXXXXXXXXXXXNKEIDAKSPEIQGRRQQQKMVGGMGLGKYNILRR 612
            Y +AAEA+ STS              NKE +A    +Q +  Q K +GGMG+GKYN+LRR
Sbjct: 114  YGSAAEAIASTSEEDTDEIQELIEEMNKENEALKTNLQPK--QPKTIGGMGVGKYNLLRR 171

Query: 613  RQIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDTCQE 792
            RQIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ  C E
Sbjct: 172  RQIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDE 231

Query: 793  GKNRAAYAPYFDQLPADMMAVITMHKLMALLMTGGGNGSARVVQAACHIGEAIEHEVRIH 972
            GKNR A AP+FDQLPA+MMAVITMHKLM  LMTGGG GSARVVQAA HIGEAIEHE RIH
Sbjct: 232  GKNRGACAPFFDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIH 291

Query: 973  KFLENCKRKNSLNRTCDEEPA-AAKEQERXXXXXXXXXXXXXXXXXRRIVSRQDDLKAWG 1149
            +FLE  K+ N+L+   ++ P    KE+ER                 R+IV +QDD K WG
Sbjct: 292  RFLEKTKKSNALSGDLEDTPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWG 351

Query: 1150 QDAQVKVGCRLIQLLMDTAYIQPPVDQMDDTPPDIRPAFVHTLKSVETLKGTRRYGVIEC 1329
            QD  VKVGCRLIQ+LM+TAYIQPP DQ+DD PPDIRPAFVHTLK+VET+KG+RRYGVI+C
Sbjct: 352  QDNLVKVGCRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTVETMKGSRRYGVIQC 411

Query: 1330 DPLVRKGLEKTARHXXXXXXXXXXXXXNWTGYERGAYLFLPSYIMRTHGAKQQREAVKRT 1509
            DPLVRKGL+KTARH             +W GY++GAYLFLPSYIMRTHGAKQQREAVKR 
Sbjct: 412  DPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRV 471

Query: 1510 PKEQLEPVYQALNTLGNTKWRVNKRILSLVDRIWANGGQLADLVDREDVPLPEEPDTEDE 1689
            PK+QLEPV+QAL+TLGNTKWR+N+++L +VDRIWA+GG+LADLVDREDVPLPEEPD EDE
Sbjct: 472  PKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDE 531

Query: 1690 SEIXXXXXXXXXXXXENSERHSQRCDIELKLTVARKMKDEEGFYYPHNLDFRGRAYPMHP 1869
            ++I            EN ERHSQRCDIELKL VARKMKDE+GFYYPHNLDFRGRAYPMHP
Sbjct: 532  AQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHP 591

Query: 1870 YLNHLGSDLCRGILEFAEARPLGKSGLRWLKIHLANLYGGGVDKFPYEGRVSFTENHLED 2049
            YLNHLGSDLCRGILEFAE RPLGKSGLRWLKIHLAN+YGGGVDK  YEGRV+F+ENH+ED
Sbjct: 592  YLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVED 651

Query: 2050 IFDSADRPLEGRRWWLGAEDPFQCLATCMSLSEALRSPYPETALSHIPVHQDGSCNGLQH 2229
            IFDSA+RPLEG+RWWLGAEDPFQCLATC++++EALRSP PETA+S++P+HQDGSCNGLQH
Sbjct: 652  IFDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQH 711

Query: 2230 YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNVNRARLLIDQ 2409
            YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVL+IMK DAA DPA DPNV RARLLI+Q
Sbjct: 712  YAALGRDTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQ 771

Query: 2410 VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERHAMDDDAELFACACYAARTTLTALGEM 2589
            VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKER  ++DD ELFA ACYAA+TTLTALGEM
Sbjct: 772  VDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEM 831

Query: 2590 FEAARGIMGWLGDCAKIIATENEPVRWTTPLGLPVVQPYRKLGKHMIKTSLQVLTLQRET 2769
            FEAAR IM WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+H+IKTSLQ+LTLQRET
Sbjct: 832  FEAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRET 891

Query: 2770 DKVMTKRQRTAFPPNFVHSLDGSHMMMTAIACSQAGLSFAGVHDSYWTHACDVDQMNKIL 2949
            DKVM KRQRTAFPPNFVHSLDGSHMMMTAIAC ++GLSFAGVHDSYWTHA DVDQMNKIL
Sbjct: 892  DKVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKIL 951

Query: 2950 REKFVELYDAPILENLLESFEKSFPGLNFPSLPERGDFDLKDVLDSTYFFN 3102
            REKFVELYDAPILENLLESF++SFP L FP LPERGDFDL++VL+S YFFN
Sbjct: 952  REKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1425 bits (3688), Expect = 0.0
 Identities = 724/1010 (71%), Positives = 809/1010 (80%), Gaps = 31/1010 (3%)
 Frame = +1

Query: 166  MWRHLSKQSCLRRFKILKESHPS-INAFSAVKYSQN-------SILCEEDMQFQPQIGVN 321
            MWR++SK +  R+F+    SH S +  FS  +YS +         LCEE     P +G++
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFS--QYSSSFGKTRPLQCLCEESTT-HPNLGLS 54

Query: 322  TGS------SGLGFFQGTI----------LRQEHDVGPPKYGFP------SDSLRFTRGY 435
              S        +   +G            L Q       K  F       S SL   R Y
Sbjct: 55   QNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSY 114

Query: 436  AAAAEALVSTSXXXXXXXXXXXXXXNKEIDAKSPEIQGRRQQQKMVGGMGLGKYNILRRR 615
             +AAEA+VSTS              +KE +A    +Q +  Q K +GGMG+GKYN LRRR
Sbjct: 115  GSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPK--QPKTIGGMGVGKYNFLRRR 172

Query: 616  QIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDTCQEG 795
            QIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ  C EG
Sbjct: 173  QIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEG 232

Query: 796  KNRAAYAPYFDQLPADMMAVITMHKLMALLMTGGGNGSARVVQAACHIGEAIEHEVRIHK 975
            KNR AYAP+FDQLPA+MMAVITMHKLM LLMTGGG GSARVVQAA +IGEAIEHE RIH+
Sbjct: 233  KNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHR 292

Query: 976  FLENCKRKNSLNRTCDEEPA-AAKEQERXXXXXXXXXXXXXXXXXRRIVSRQDDLKAWGQ 1152
            FLE  K+ N+L+   +E P    KE+ER                 R+IV +QDD K WGQ
Sbjct: 293  FLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQ 352

Query: 1153 DAQVKVGCRLIQLLMDTAYIQPPVDQMDDTPPDIRPAFVHTLKSVETLKGTRRYGVIECD 1332
            D  VKVGCRLIQ+LM+TAYIQPP DQ+DD PPDIRPAFVHTLK+VET+KG+RRYGVI+CD
Sbjct: 353  DNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCD 412

Query: 1333 PLVRKGLEKTARHXXXXXXXXXXXXXNWTGYERGAYLFLPSYIMRTHGAKQQREAVKRTP 1512
            PLVRKGL+KTARH             +W GY++G YLFLPSYIMRTHGAKQQREAVKR P
Sbjct: 413  PLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVP 472

Query: 1513 KEQLEPVYQALNTLGNTKWRVNKRILSLVDRIWANGGQLADLVDREDVPLPEEPDTEDES 1692
            K+QLEPV+QAL+TLGNTKWRVN+++L +VDRIWA+GG+LADLVDREDVPLPE PDTEDE+
Sbjct: 473  KKQLEPVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEA 532

Query: 1693 EIXXXXXXXXXXXXENSERHSQRCDIELKLTVARKMKDEEGFYYPHNLDFRGRAYPMHPY 1872
            EI            EN ERHSQRCDIELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPY
Sbjct: 533  EIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPY 592

Query: 1873 LNHLGSDLCRGILEFAEARPLGKSGLRWLKIHLANLYGGGVDKFPYEGRVSFTENHLEDI 2052
            LNHLGSDLCRGILEFAE RPLG SGLRWLKIHLAN+YGGGVDK  YEGRV+F+ENHLEDI
Sbjct: 593  LNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDI 652

Query: 2053 FDSADRPLEGRRWWLGAEDPFQCLATCMSLSEALRSPYPETALSHIPVHQDGSCNGLQHY 2232
            FDSA+RPLEG+RWWLGAEDPFQCLATC++++EALRSP PETA+S++P+HQDGSCNGLQHY
Sbjct: 653  FDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHY 712

Query: 2233 AALGRDTLGAAAVNLVAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNVNRARLLIDQV 2412
            AALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IMK DAA DPA DPNV RARLLI+QV
Sbjct: 713  AALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQV 772

Query: 2413 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERHAMDDDAELFACACYAARTTLTALGEMF 2592
            DRKLVKQTVMTSVYGVTYIGARDQIK+RLKER  ++DD ELFA ACYAA+TTLTALGEMF
Sbjct: 773  DRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMF 832

Query: 2593 EAARGIMGWLGDCAKIIATENEPVRWTTPLGLPVVQPYRKLGKHMIKTSLQVLTLQRETD 2772
            EAAR IM WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+H+IKTSLQ+LTLQRETD
Sbjct: 833  EAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETD 892

Query: 2773 KVMTKRQRTAFPPNFVHSLDGSHMMMTAIACSQAGLSFAGVHDSYWTHACDVDQMNKILR 2952
            KVM KRQRTAFPPNFVHSLDGSHMMMTAIAC ++GLSFAGVHDSYWTHACDVDQMNKILR
Sbjct: 893  KVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILR 952

Query: 2953 EKFVELYDAPILENLLESFEKSFPGLNFPSLPERGDFDLKDVLDSTYFFN 3102
            EKFVELYDAPILENLLESF++SFP L FP LPERGDFDL++VL+S YFFN
Sbjct: 953  EKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1423 bits (3683), Expect = 0.0
 Identities = 723/1010 (71%), Positives = 809/1010 (80%), Gaps = 31/1010 (3%)
 Frame = +1

Query: 166  MWRHLSKQSCLRRFKILKESHPS-INAFSAVKYSQN-------SILCEEDMQFQPQIGVN 321
            MWR++SK +  R+F+    SH S +  FS  +YS +         LCEE     P +G++
Sbjct: 1    MWRYISKHAYSRKFR---NSHDSALLGFS--QYSSSFGKTRPLQCLCEESTT-HPNLGLS 54

Query: 322  TGS------SGLGFFQGTI----------LRQEHDVGPPKYGFP------SDSLRFTRGY 435
              S        +   +G            L Q       K  F       S SL   R Y
Sbjct: 55   QNSIFSRISRKVRHLEGICEESSKNPHLGLSQNSTFSSVKGDFRICGKRGSGSLGRLRSY 114

Query: 436  AAAAEALVSTSXXXXXXXXXXXXXXNKEIDAKSPEIQGRRQQQKMVGGMGLGKYNILRRR 615
             +AAEA+VSTS              +KE +A    +Q +  Q K +GGMG+GKYN LRRR
Sbjct: 115  GSAAEAIVSTSEEDIDEIQELIEEMDKENEALKANLQPK--QPKTIGGMGVGKYNFLRRR 172

Query: 616  QIKVETEAWEEAAKEYQELLVDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQDTCQEG 795
            QIKVETEAWEEAAKEYQELL+DMCEQKLAPNLPY+KSLFLGWFEPLRDAIAAEQ  C EG
Sbjct: 173  QIKVETEAWEEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEG 232

Query: 796  KNRAAYAPYFDQLPADMMAVITMHKLMALLMTGGGNGSARVVQAACHIGEAIEHEVRIHK 975
            KNR AYAP+FDQLPA+MMAVITMHKLM LLMTGGG GSARVVQAA +IGEAIEHE RIH+
Sbjct: 233  KNRGAYAPFFDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHR 292

Query: 976  FLENCKRKNSLNRTCDEEPA-AAKEQERXXXXXXXXXXXXXXXXXRRIVSRQDDLKAWGQ 1152
            FLE  K+ N+L+   +E P    KE+ER                 R+IV +QDD K WGQ
Sbjct: 293  FLEKTKKSNALSGDLEETPGDMMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQ 352

Query: 1153 DAQVKVGCRLIQLLMDTAYIQPPVDQMDDTPPDIRPAFVHTLKSVETLKGTRRYGVIECD 1332
            D  VKVGCRLIQ+LM+TAYIQPP DQ+DD PPDIRPAFVHTLK+VET+KG+RRYGVI+CD
Sbjct: 353  DNLVKVGCRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTVETMKGSRRYGVIQCD 412

Query: 1333 PLVRKGLEKTARHXXXXXXXXXXXXXNWTGYERGAYLFLPSYIMRTHGAKQQREAVKRTP 1512
            PLVRKGL+KTARH             +W GY++G YLFLPSYIMRTHGAKQQREAVKR P
Sbjct: 413  PLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVP 472

Query: 1513 KEQLEPVYQALNTLGNTKWRVNKRILSLVDRIWANGGQLADLVDREDVPLPEEPDTEDES 1692
            K+QLEPV+QAL+TLGNTKWRVN+++L +V+RIWA+GG+LADLVDREDVPLPE PDTEDE+
Sbjct: 473  KKQLEPVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEA 532

Query: 1693 EIXXXXXXXXXXXXENSERHSQRCDIELKLTVARKMKDEEGFYYPHNLDFRGRAYPMHPY 1872
            EI            EN ERHSQRCDIELKL VARKMKDE+GFYYPHNLDFRGRAYPMHPY
Sbjct: 533  EIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPY 592

Query: 1873 LNHLGSDLCRGILEFAEARPLGKSGLRWLKIHLANLYGGGVDKFPYEGRVSFTENHLEDI 2052
            LNHLGSDLCRGILEFAE RPLG SGLRWLKIHLAN+YGGGVDK  YEGRV+F+ENHLEDI
Sbjct: 593  LNHLGSDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDI 652

Query: 2053 FDSADRPLEGRRWWLGAEDPFQCLATCMSLSEALRSPYPETALSHIPVHQDGSCNGLQHY 2232
            FDSA+RPLEG+RWWLGAEDPFQCLATC++++EALRSP PETA+S++P+HQDGSCNGLQHY
Sbjct: 653  FDSAERPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHY 712

Query: 2233 AALGRDTLGAAAVNLVAGDKPADVYSGIAARVLEIMKTDAAGDPAIDPNVNRARLLIDQV 2412
            AALGRD LGAAAVNLVAGDKPADVYSGIAARVL+IMK DAA DPA DPNV RARLLI+QV
Sbjct: 713  AALGRDKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQV 772

Query: 2413 DRKLVKQTVMTSVYGVTYIGARDQIKRRLKERHAMDDDAELFACACYAARTTLTALGEMF 2592
            DRKLVKQTVMTSVYGVTYIGARDQIK+RLKER  ++DD ELFA ACYAA+TTLTALGEMF
Sbjct: 773  DRKLVKQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMF 832

Query: 2593 EAARGIMGWLGDCAKIIATENEPVRWTTPLGLPVVQPYRKLGKHMIKTSLQVLTLQRETD 2772
            EAAR IM WLGDCAKIIA EN PVRWTTPLGLPVVQPYRKLG+H+IKTSLQ+LTLQRETD
Sbjct: 833  EAARSIMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETD 892

Query: 2773 KVMTKRQRTAFPPNFVHSLDGSHMMMTAIACSQAGLSFAGVHDSYWTHACDVDQMNKILR 2952
            KVM KRQRTAFPPNFVHSLDGSHMMMTAIAC ++GLSFAGVHDSYWTHACDVDQMNKILR
Sbjct: 893  KVMVKRQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILR 952

Query: 2953 EKFVELYDAPILENLLESFEKSFPGLNFPSLPERGDFDLKDVLDSTYFFN 3102
            EKFVELYDAPILENLLESF++SFP L FP LPERGDFDL++VL+S YFFN
Sbjct: 953  EKFVELYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002