BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00039148
         (285 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea bat...   108   7e-22
emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]   107   2e-21
ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803...   103   2e-20
ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788...   102   5e-20
ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659...   102   5e-20
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664...   102   5e-20
gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]             102   5e-20
gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]             102   7e-20
ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778...   101   9e-20
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]        99   6e-19
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]                  99   6e-19
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...    99   6e-19
ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594...    98   1e-18
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]                  98   1e-18
gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]        98   1e-18
ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624...    97   2e-18
gb|AAD17351.1| contains similarity to retrovirus-related polypro...    96   4e-18
ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763...    96   6e-18
ref|XP_006290417.1| hypothetical protein CARUB_v10019144mg, part...    96   6e-18
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...    96   6e-18

>gb|AAV88076.1| putative retrotransposon polyprotein [Ipomoea batatas]
          Length = 1358

 Score =  108 bits (270), Expect = 7e-22
 Identities = 51/91 (56%), Positives = 64/91 (70%)
 Frame = +1

Query: 10  ASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQ 189
           A+ S IIDG S  N+++E VVN + +PT+ HPQPY LQW++      V +Q LIS SIG+
Sbjct: 414 ATCSFIIDGGSCTNVISEDVVNAMKIPTIQHPQPYKLQWLNDDGELKVHKQALISISIGK 473

Query: 190 YTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           Y D VLCDVI M A HILLG PWQ+D+  LH
Sbjct: 474 YQDDVLCDVIPMHACHILLGRPWQYDRDTLH 504


>emb|CAN73690.1| hypothetical protein VITISV_034834 [Vitis vinifera]
          Length = 818

 Score =  107 bits (267), Expect = 2e-21
 Identities = 47/89 (52%), Positives = 66/89 (74%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+IIDG S  N+ +  +V +L+LPT+ HP+PY LQW++    + V ++ L+SFSIG+Y D
Sbjct: 428 SMIIDGGSCTNVASTTLVENLNLPTLKHPRPYKLQWLNDFGEDKVNKEVLVSFSIGRYKD 487

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCD++ M A HILLG PWQFD++V HD
Sbjct: 488 EVLCDIVPMHAGHILLGRPWQFDRKVNHD 516


>ref|XP_006605097.1| PREDICTED: uncharacterized protein LOC100803456 [Glycine max]
          Length = 732

 Score =  103 bits (258), Expect = 2e-20
 Identities = 46/89 (51%), Positives = 63/89 (70%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+IIDG S  N+V+ ++V  ++L T PHP+PY LQW+S      V +Q  I FSIG+Y D
Sbjct: 260 SLIIDGGSCTNVVSARLVKKMNLETKPHPRPYKLQWLSEEGELRVDKQVEIQFSIGKYKD 319

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
             LCDV+ M+A+H+LLG PWQFD++  HD
Sbjct: 320 KTLCDVVPMEASHVLLGRPWQFDRKAHHD 348


>ref|XP_006607002.1| PREDICTED: uncharacterized protein LOC100788838 [Glycine max]
          Length = 519

 Score =  102 bits (254), Expect = 5e-20
 Identities = 44/89 (49%), Positives = 62/89 (69%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+I+DG S  N+ +  +V  L+L T PHP+PY LQW+S      VT+Q  +  +IG+Y D
Sbjct: 400 SLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQQVEVCLTIGRYND 459

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+ATH+LLG PWQ+D + +HD
Sbjct: 460 KVLCDVVPMEATHVLLGRPWQYDTKAVHD 488


>ref|XP_006603400.1| PREDICTED: uncharacterized protein LOC102659640 [Glycine max]
          Length = 594

 Score =  102 bits (254), Expect = 5e-20
 Identities = 44/89 (49%), Positives = 62/89 (69%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+I+DG S  N+ +  +V  L+L T PHP+PY LQW+S      VT+Q  +  +IG+Y D
Sbjct: 400 SLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEIKVTQQVEVCLTIGRYND 459

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+ATH+LLG PWQ+D + +HD
Sbjct: 460 KVLCDVVPMEATHVLLGRPWQYDTKAVHD 488


>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
          Length = 1176

 Score =  102 bits (254), Expect = 5e-20
 Identities = 44/89 (49%), Positives = 62/89 (69%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+I+DG S  N+ +  +V  L+L T PHP+PY LQW+S      VT+Q  +  +IG+Y D
Sbjct: 400 SLIVDGGSCTNVASSTLVTKLNLETKPHPRPYKLQWLSEDEEVKVTQQVEVCLTIGRYND 459

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+ATH+LLG PWQ+D + +HD
Sbjct: 460 KVLCDVVPMEATHVLLGRPWQYDTKAVHD 488


>gb|ADP20180.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 1004

 Score =  102 bits (254), Expect = 5e-20
 Identities = 46/89 (51%), Positives = 63/89 (70%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+IIDG S  N+ + ++V+ L L T PHP+PY LQW++ S    V +Q  I F IG+Y D
Sbjct: 378 SLIIDGGSCTNVASTRLVSRLKLETKPHPKPYKLQWLNESVEMLVNKQVEICFKIGKYED 437

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+A+H+LLG PWQFD++  HD
Sbjct: 438 VVLCDVVPMEASHLLLGRPWQFDRKANHD 466


>gb|ADP20181.1| mutant gag-pol polyprotein [Pisum sativum]
          Length = 572

 Score =  102 bits (253), Expect = 7e-20
 Identities = 46/89 (51%), Positives = 63/89 (70%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+IIDG S  N+ + ++V+ L L T PHP+PY LQW++ S    V +Q  I F IG+Y D
Sbjct: 378 SLIIDGGSCTNVASTRLVSKLKLETKPHPKPYKLQWLNESVEMLVNKQVEICFKIGKYED 437

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+A+H+LLG PWQFD++  HD
Sbjct: 438 VVLCDVVPMEASHLLLGRPWQFDRKANHD 466


>ref|XP_006607055.1| PREDICTED: uncharacterized protein LOC100778333, partial [Glycine
           max]
          Length = 560

 Score =  101 bits (252), Expect = 9e-20
 Identities = 44/89 (49%), Positives = 61/89 (68%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQYTD 198
           S+I+DG S  N+ +  +V  L+L T PHP PY LQW+S      VT+Q  +  +IG+Y D
Sbjct: 399 SLIVDGGSCTNVASSTLVTKLNLETKPHPTPYKLQWLSEDEEVKVTQQVEVCLTIGRYND 458

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            VLCDV+ M+ATH+LLG PWQ+D + +HD
Sbjct: 459 KVLCDVVPMEATHVLLGRPWQYDTKAVHD 487


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/94 (51%), Positives = 62/94 (65%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K  S  VIIDG S  N+ + ++V  L+L T PHPQPY +QW++SS    VTR   + F+
Sbjct: 497 IKERSCHVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFA 556

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           IG Y DS+ CDV+ M A  +LLG PWQFDK  LH
Sbjct: 557 IGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLH 590


>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
          Length = 1475

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 44/95 (46%), Positives = 65/95 (68%), Gaps = 1/95 (1%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K    ++IIDG S  N+ +  ++  LSLPT  HP PY L+W++  +   V +QCL++FS
Sbjct: 395 IKGRVCNLIIDGGSCTNVASSTLIEKLSLPTQDHPSPYKLRWLNKGAEVRVDKQCLVTFS 454

Query: 181 IGQ-YTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           IG+ Y+D  LCDV+ MDA H+LLG PW+FD+  +H
Sbjct: 455 IGKNYSDEALCDVLPMDACHLLLGRPWEFDRDSVH 489


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
           sativa Japonica Group]
          Length = 1616

 Score = 99.0 bits (245), Expect = 6e-19
 Identities = 48/94 (51%), Positives = 62/94 (65%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K  S  VIIDG S  N+ + ++V  L+L T PHPQPY +QW++SS    VTR   + F+
Sbjct: 497 IKERSCRVIIDGGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFA 556

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           IG Y DS+ CDV+ M A  +LLG PWQFDK  LH
Sbjct: 557 IGSYHDSINCDVVPMQACSMLLGRPWQFDKDSLH 590


>ref|XP_006366953.1| PREDICTED: uncharacterized protein LOC102594328 [Solanum tuberosum]
          Length = 1191

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 42/95 (44%), Positives = 63/95 (66%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K  + S+IIDG S  N+V+  +V+ L +  M  P PY LQW++      V +QC+ISF+
Sbjct: 455 IKGKTYSMIIDGGSCANVVSSYLVDKLGIACMKRPTPYRLQWLNDCGEVKVNKQCMISFN 514

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLHD 285
           +G+Y D +LCDV+ M A H+LLG PWQ+D++   D
Sbjct: 515 VGRYEDEILCDVVPMQACHVLLGRPWQYDRQNFED 549


>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
          Length = 1518

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/90 (51%), Positives = 63/90 (70%), Gaps = 2/90 (2%)
 Frame = +1

Query: 19  SVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIGQ-YT 195
           ++II+G S  N+ +  +V+ L LPT  HP PY L+W+S  SG  V +QC+ISFSIG+ Y 
Sbjct: 412 NLIINGGSCTNVASTTMVSKLGLPTQEHPNPYKLRWLSKDSGVRVDKQCIISFSIGKMYK 471

Query: 196 DSVLCDVIT-MDATHILLGCPWQFDKRVLH 282
           D VLCDV+  MDA H+LLG PW++D+   H
Sbjct: 472 DEVLCDVVVPMDACHLLLGRPWEYDRNTTH 501


>gb|AAQ72729.1| putative gag-pol polyprotein [Petunia x hybrida]
          Length = 803

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 44/95 (46%), Positives = 61/95 (64%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           VK    S+IID  S  N+V++ ++  L LPTM HP+PY LQW+S      V +Q +I F 
Sbjct: 474 VKGVVCSMIIDSGSCTNVVSQSLITQLKLPTMKHPKPYRLQWLSECGELKVVKQAMIKFK 533

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLHD 285
           +G Y D  L DV+ M A H+L G PWQFD++V+H+
Sbjct: 534 MGSYVDEHLFDVVPMQACHLLFGRPWQFDRQVVHN 568


>ref|XP_006494982.1| PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
          Length = 1083

 Score = 97.4 bits (241), Expect = 2e-18
 Identities = 47/95 (49%), Positives = 62/95 (65%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K    S+IIDG S  N+    +V  L+L T+ H + Y LQW++      V +Q L+SFS
Sbjct: 239 IKDKVCSMIIDGGSCTNVAITSLVEKLNLKTLKHSRLYKLQWLNDYGEVKVNKQVLVSFS 298

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLHD 285
           IG+Y D VLCDV+ M A HILLG PWQ+D+RV HD
Sbjct: 299 IGRYKDDVLCDVVPMHAGHILLGRPWQYDRRVTHD 333


>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
           zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
           E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
           putative polyprotein [Arabidopsis thaliana]
          Length = 1138

 Score = 96.3 bits (238), Expect = 4e-18
 Identities = 42/95 (44%), Positives = 62/95 (65%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K    S+IIDG S  N+ +E +V  L L   PHP+PY LQW++ S    VTRQ  +  +
Sbjct: 356 IKGKVCSLIIDGGSCTNVASETMVQKLGLEEFPHPKPYKLQWLNESGEMAVTRQVQVPLA 415

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLHD 285
           IG+Y D +LCD++ ++A+H+LLG PWQ D++   D
Sbjct: 416 IGKYEDEILCDILPLEASHVLLGRPWQSDRKDYQD 450


>ref|XP_004977878.1| PREDICTED: uncharacterized protein LOC101763064 [Setaria italica]
          Length = 1131

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 47/94 (50%), Positives = 62/94 (65%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K  S  VIIDG S  N+ + ++V  L+L T PHPQPY +QW++SS    VTR   ++F+
Sbjct: 496 IKERSCRVIIDGGSCNNLASAEMVEKLALCTQPHPQPYYIQWLNSSGKVKVTRLVRVNFA 555

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           IG Y DS+ CDV+ M A  +LLG PWQFD   LH
Sbjct: 556 IGSYHDSIDCDVVPMQACSMLLGRPWQFDIDSLH 589


>ref|XP_006290417.1| hypothetical protein CARUB_v10019144mg, partial [Capsella rubella]
           gi|482559124|gb|EOA23315.1| hypothetical protein
           CARUB_v10019144mg, partial [Capsella rubella]
          Length = 110

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 41/89 (46%), Positives = 65/89 (73%), Gaps = 1/89 (1%)
 Frame = +1

Query: 22  VIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFSIG-QYTD 198
           +IID  S  N+++E+ V+ L+L T  HP PY L W++SS+ + ++++C + F IG  Y D
Sbjct: 12  MIIDSGSFTNVISEEAVSKLALFTESHPTPYCLAWLNSSTDSRLSKRCRVPFLIGANYKD 71

Query: 199 SVLCDVITMDATHILLGCPWQFDKRVLHD 285
            V+CD++ MDA H+LLG PWQ+D+R++HD
Sbjct: 72  LVICDILPMDACHLLLGRPWQYDRRIMHD 100


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
           gi|15217296|gb|AAK92640.1|AC079634_1 Putative
           retroelement [Oryza sativa Japonica Group]
           gi|31431373|gb|AAP53161.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1708

 Score = 95.5 bits (236), Expect = 6e-18
 Identities = 47/94 (50%), Positives = 60/94 (63%)
 Frame = +1

Query: 1   VKTASLSVIIDGES*CNIVNEKVVNHLSLPTMPHPQPYGLQWISSSSGNTVTRQCLISFS 180
           +K  S  VIID  S  N+ + ++V  L+L T PHPQPY +QW++SS    VTR   + F+
Sbjct: 497 IKERSCRVIIDRGSCNNLASAEMVEKLALSTQPHPQPYYIQWLNSSGKVKVTRLVRVHFA 556

Query: 181 IGQYTDSVLCDVITMDATHILLGCPWQFDKRVLH 282
           IG Y DS+ CDV+ M A  I LG PWQFDK  LH
Sbjct: 557 IGSYHDSINCDVVPMQACSIFLGRPWQFDKDSLH 590