BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00038989
         (288 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002331075.1| predicted protein [Populus trichocarpa]            67   3e-09
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc...    65   1e-08
gb|AAC95175.1| putative non-LTR retroelement reverse transcripta...    63   3e-08
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    62   8e-08
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]        61   1e-07
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ...    60   4e-07
gb|AAF79677.1|AC022314_18 F9C16.26 [Arabidopsis thaliana]              59   5e-07
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ...    59   9e-07
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]            59   9e-07
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298...    58   1e-06
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal...    58   1e-06
gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thal...    58   1e-06
dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]            57   2e-06
dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like ...    57   3e-06
dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like ...    57   3e-06
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta...    56   6e-06
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]              55   1e-05

>ref|XP_002331075.1| predicted protein [Populus trichocarpa]
          Length = 517

 Score = 66.6 bits (161), Expect = 3e-09
 Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTE-SIWHTWGRVNLLRNQNFWEIKRKGT 111
           C P+ EG LG+K +  WNK ++ + I++L  D++ SIW TW R NLLR +NFW IK    
Sbjct: 153 CLPKKEGGLGIKSIKEWNKIALLKHIWNLCNDSDGSIWSTWIRSNLLRGRNFWTIKTPQN 212

Query: 110 DSALWRSLLNTR 75
            S  W  +L  R
Sbjct: 213 CSWAWGKILKLR 224


>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
          Length = 1214

 Score = 64.7 bits (156), Expect = 1e-08
 Identities = 32/88 (36%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
            C P+ EG LGL+    WNKT    LI+ L A  +S+W  W   N LR+ NFW  +     
Sbjct: 858  CLPKAEGGLGLRNFWTWNKTLNLRLIWMLFARRDSLWVAWNHANRLRHVNFWNAEAASHH 917

Query: 107  SALWRSLLNTRD--DILLRHSLDNGPII 30
            S +W+++L  R      LR ++ NG ++
Sbjct: 918  SWIWKAILGLRPLAKRFLRGAVGNGQLL 945


>gb|AAC95175.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1352

 Score = 63.2 bits (152), Expect = 3e-08
 Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRK-GT 111
            C+ ++EG LGLK +   N+ S+ +LI+ +++  +S+W  W   +L+R + FW +K   G 
Sbjct: 1013 CKLKEEGGLGLKPLKEANEVSLLKLIWRILSARDSLWVKWVNKHLIRKETFWSVKENTGL 1072

Query: 110  DSALWRSLLNTRDDILLRHSLD 45
             S LWR +L  RD   L H ++
Sbjct: 1073 GSWLWRKILKQRDKARLFHRME 1094


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 62.0 bits (149), Expect = 8e-08
 Identities = 30/73 (41%), Positives = 46/73 (63%), Gaps = 1/73 (1%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGT- 111
           C+P+ EG LGL+ +   NK S  +LI+ L++  +S+W  W R+NLL+ ++FW I    T 
Sbjct: 587 CKPKKEGGLGLQSLREANKVSSLKLIWRLLSCQDSLWVKWTRMNLLKKESFWSIGTHSTL 646

Query: 110 DSALWRSLLNTRD 72
            S +WR LL  R+
Sbjct: 647 GSWIWRRLLKHRE 659


>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
            C P+ EG LGL+ +L WNKT    LI+ L    +S+W  W  ++ L   +FW ++   +D
Sbjct: 859  CLPKSEGGLGLRRLLEWNKTLSMRLIWRLFVAKDSLWADWQHLHHLSRGSFWAVEGGQSD 918

Query: 107  SALWRSLLNTR 75
            S  W+ LL+ R
Sbjct: 919  SWTWKRLLSLR 929


>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein [Arabidopsis
            thaliana]
          Length = 1223

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 26/73 (35%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRK-GT 111
            C+P+DEG LGL+ +   N     +L++ +++ + S+W  W   +LLRN +FWE+K+    
Sbjct: 866  CKPKDEGGLGLRSLKEANDVCCLKLVWKIVSHSNSLWVKWVDQHLLRNASFWEVKQTVSQ 925

Query: 110  DSALWRSLLNTRD 72
             S +W+ LL  R+
Sbjct: 926  GSWIWKKLLKYRE 938


>gb|AAF79677.1|AC022314_18 F9C16.26 [Arabidopsis thaliana]
          Length = 1902

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
            C  +  G LGL++++AWNK    +LI+ L     S+W +W RVNL+RN+NFW +    + 
Sbjct: 1551 CSSKVCGGLGLRDLVAWNKVLALKLIWMLFTAASSLWVSWVRVNLIRNKNFWYLNPSFSG 1610

Query: 107  SALWRSLLNTR 75
            S + R L   R
Sbjct: 1611 SWILRRLCKLR 1621


>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
           thaliana]
          Length = 1072

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
           C P+ EG LG +    WNKT +  LI+ L     S+W  W R + L + +FW++    TD
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTD 778

Query: 107 SALWRSLLNTR 75
              W+ LLN R
Sbjct: 779 PWTWKMLLNLR 789


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 27/71 (38%), Positives = 38/71 (53%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
           C P+ EG LG +    WNKT +  LI+ L     S+W  W R + L + +FW++    TD
Sbjct: 719 CLPKSEGGLGFRSFGEWNKTLLLRLIWVLFDRDTSLWAQWQRHHRLGHASFWQVNALQTD 778

Query: 107 SALWRSLLNTR 75
              W+ LLN R
Sbjct: 779 PWTWKMLLNLR 789


>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
           subsp. vesca]
          Length = 958

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 40/72 (55%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
           C P+ EG LG+K++  WNK  +   I++L++ + + W  W +V LL+  +FW        
Sbjct: 688 CLPKCEGGLGIKDLHCWNKALMISHIWNLVSSSSNFWTDWVKVYLLKGNSFWNAPLPSIC 747

Query: 107 SALWRSLLNTRD 72
           S  WR LL  R+
Sbjct: 748 SWNWRKLLKIRE 759


>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|7267919|emb|CAB78261.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 662

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 25/72 (34%), Positives = 39/72 (54%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGTD 108
           CRP+ EG LGL+ +   N     +LI+ +++  +S+W  W R  LL+   FW  +     
Sbjct: 384 CRPKREGGLGLQSIKEANDVCCLKLIWRIVSQGDSLWVQWIRTYLLKRNTFWSFRSASQG 443

Query: 107 SALWRSLLNTRD 72
           S +W+ LL  RD
Sbjct: 444 SWMWKKLLKYRD 455


>gb|AAG50886.1|AC025294_24 hypothetical protein [Arabidopsis thaliana]
          Length = 629

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEI-KRKGT 111
           C+P+ EG LGL+ +   N  S+ +LI+ + ++ +S+W  W ++NLL+ ++FW +      
Sbjct: 271 CKPKQEGGLGLRSLTEANVVSVLKLIWRVTSNDDSLWVKWSKMNLLKQESFWSLTPNSSL 330

Query: 110 DSALWRSLLNTRD 72
            S +W+ +L  R+
Sbjct: 331 GSWMWKKMLKYRE 343


>dbj|BAD95408.1| hypothetical protein [Arabidopsis thaliana]
          Length = 478

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 31/86 (36%), Positives = 50/86 (58%), Gaps = 3/86 (3%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGT- 111
           C P+DEG LG++ +   NK S+ +LI+ +++ T S+W  W R+ LLR  +FW I    T 
Sbjct: 122 CTPKDEGGLGIRSLKEANKVSLLKLIWRMLSST-SLWVQWLRLYLLRKGSFWSISGNTTL 180

Query: 110 DSALWRSLLNTR--DDILLRHSLDNG 39
            S +W+ +L  R      ++H + NG
Sbjct: 181 GSWMWKKILKHRALASGFVKHDIHNG 206


>dbj|BAB08692.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana] gi|93007380|gb|ABE97193.1|
           hypothetical protein At5g13655 [Arabidopsis thaliana]
          Length = 385

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRKGT- 111
           C P+ EG LGL+ V   NK  + +LI+ +++   S+W  W + +LLR  + W +K   + 
Sbjct: 25  CTPKSEGGLGLRAVEETNKVCMLKLIWRILSAKGSLWVDWVKKHLLRGGSLWAVKETSSR 84

Query: 110 DSALWRSLLNTRDDILLRHSLD 45
            S +W+ LL  RD     H +D
Sbjct: 85  GSWIWKKLLKYRDKAKCFHKVD 106


>dbj|BAB08270.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 489

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIKRK-GT 111
           C+P+DEG LGL+ +   N  S  +LI+ +I+  +S+W  W    LL+  +FW ++     
Sbjct: 248 CKPKDEGGLGLRSLKEANDVSCLKLIWRIISHADSLWVKWIHATLLKQVSFWAVRENTSL 307

Query: 110 DSALWRSLLNTRDDI--LLRHSLDNG 39
            S +W+ +L  RD    L +  ++NG
Sbjct: 308 GSWMWKKVLKFRDAAIQLCKAEVNNG 333


>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1277

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
 Frame = -2

Query: 287  CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIK-RKGT 111
            C+ + EG LG+K +L  NK S  +LI+ L++   S+W  W    ++R  +FW    R   
Sbjct: 1008 CKLKQEGGLGIKSLLEANKVSCLKLIWRLVSRQSSLWVNWVWTYIIRKGSFWSANDRSSL 1067

Query: 110  DSALWRSLLNTRD 72
             S +W+ LLN RD
Sbjct: 1068 GSWMWKKLLNYRD 1080


>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
          Length = 653

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
 Frame = -2

Query: 287 CRPQDEGRLGLKEVLAWNKTSISELIYDLIADTESIWHTWGRVNLLRNQNFWEIK-RKGT 111
           C+P+ EG LGL+ +   N+ S  +LI+ +++ T S+W  W    LL++  FW ++     
Sbjct: 393 CKPKQEGGLGLRSLKEMNEVSCLKLIWRIVSHTNSLWVRWIEQYLLKHDTFWSVQTTTNM 452

Query: 110 DSALWR 93
           DS LWR
Sbjct: 453 DSVLWR 458