BLASTX nr result
ID: Rheum21_contig00036619
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00036619
(315 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. olei... 104 1e-20
ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668... 103 2e-20
ref|NP_063981.1| orf129a gene product (mitochondrion) [Beta vulg... 103 3e-20
ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulg... 103 3e-20
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 101 9e-20
gb|ABD96948.1| hypothetical protein [Cleome spinosa] 99 4e-19
emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thal... 99 8e-19
gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana] 97 2e-18
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ... 97 3e-18
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li... 97 3e-18
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 96 4e-18
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 96 6e-18
emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|72694... 96 6e-18
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 95 8e-18
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 95 1e-17
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 92 5e-17
gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana] 92 5e-17
dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thal... 92 5e-17
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 92 5e-17
gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CA... 92 9e-17
>emb|CAD22562.1| reverse transcriptase [Brassica rapa subsp. oleifera]
Length = 137
Score = 104 bits (259), Expect = 1e-20
Identities = 47/101 (46%), Positives = 66/101 (65%)
Frame = +2
Query: 11 IDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALV 190
+ P Q+AF++GR + +N+ L EL+R YN + R L VD+ KA+DTV WDF+ L
Sbjct: 32 VSPNQAAFLKGRSLGENVLLASELIRDYNKSSCLRSSMLKVDIRKAFDTVCWDFVIKILR 91
Query: 191 HLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
GFPP FV+W EC+ S +S+ +N + GFF GK+GLRQ
Sbjct: 92 AQGFPPLFVSWIQECITSPRFSVALNGELAGFFEGKKGLRQ 132
>ref|XP_006595311.1| PREDICTED: uncharacterized protein LOC102668530 [Glycine max]
Length = 477
Score = 103 bits (257), Expect = 2e-20
Identities = 45/88 (51%), Positives = 64/88 (72%)
Frame = +2
Query: 50 MSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGFPPKFVAWTM 229
M +NIFL+QELLRKY R + RC L +DL KAY+++SW+FL + L +GFP +F +W M
Sbjct: 1 MMNNIFLIQELLRKYARKRISPRCLLKIDLHKAYNSISWEFLDWMLKSMGFPTQFCSWIM 60
Query: 230 ECVCSASYSIKINNGIHGFFPGKRGLRQ 313
EC+ + S+S+ +N I+G F G+ GLRQ
Sbjct: 61 ECITTTSFSVVVNGSIYGHFKGQHGLRQ 88
>ref|NP_063981.1| orf129a gene product (mitochondrion) [Beta vulgaris subsp.
vulgaris] gi|9049283|dbj|BAA99293.1| orf129a [Beta
vulgaris subsp. vulgaris]
Length = 129
Score = 103 bits (256), Expect = 3e-20
Identities = 47/104 (45%), Positives = 67/104 (64%)
Frame = +2
Query: 2 GSLIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRF 181
G +I+ AQ+ F+ G+ + DNI L EL++ Y+ + RC + VDL KAYD++ W FL+
Sbjct: 6 GEVINEAQAGFIPGKHIGDNILLATELIKGYSQKAVSPRCMIKVDLRKAYDSIEWSFLQC 65
Query: 182 ALVHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
L LGFP +F+ W MECV + SYSI +N FP K+G+RQ
Sbjct: 66 MLSELGFPSQFITWIMECVTTVSYSILLNGKPTTPFPSKKGVRQ 109
>ref|YP_004222309.1| hypothetical protein BevumaM_p074 [Beta vulgaris subsp. maritima]
gi|346683183|ref|YP_004842114.1| hypothetical protein
BemaM_p069 [Beta macrocarpa]
gi|319439824|emb|CBX33299.1| hypothetical protein [Beta
vulgaris subsp. maritima] gi|345500101|emb|CBX24919.1|
hypothetical protein [Beta macrocarpa]
Length = 238
Score = 103 bits (256), Expect = 3e-20
Identities = 47/104 (45%), Positives = 67/104 (64%)
Frame = +2
Query: 2 GSLIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRF 181
G +I+ AQ+ F+ G+ + DNI L EL++ Y+ + RC + VDL KAYD++ W FL+
Sbjct: 6 GEVINEAQAGFIPGKHIGDNILLATELIKGYSQKAVSPRCMIKVDLRKAYDSIEWSFLQC 65
Query: 182 ALVHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
L LGFP +F+ W MECV + SYSI +N FP K+G+RQ
Sbjct: 66 MLSELGFPSQFITWIMECVTTVSYSILLNGKPTTPFPSKKGVRQ 109
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 101 bits (252), Expect = 9e-20
Identities = 47/104 (45%), Positives = 64/104 (61%)
Frame = +2
Query: 2 GSLIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRF 181
G +++ AQS F+ GR ++DNI L EL+R Y + RC + VD+ KAYD+V W FL
Sbjct: 540 GEVVNEAQSGFIPGRHIADNILLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLET 599
Query: 182 ALVHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
L GFP +FV W MECV + SYS+ +N F ++GLRQ
Sbjct: 600 LLYEFGFPSRFVGWIMECVSTVSYSVLVNGIPTQPFQARKGLRQ 643
>gb|ABD96948.1| hypothetical protein [Cleome spinosa]
Length = 539
Score = 99.4 bits (246), Expect = 4e-19
Identities = 44/103 (42%), Positives = 65/103 (63%)
Frame = +2
Query: 5 SLIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFA 184
++ P Q AF+EGRLM +N+ L EL+ +YN ++R L +DL KA+DTVSW+F+
Sbjct: 3 AIFSPNQGAFLEGRLMVENVLLATELVHEYNRPNTSKRAMLKIDLRKAFDTVSWEFITKI 62
Query: 185 LVHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
+ L P FV W C+ + +S+ IN + G+F G+RGLRQ
Sbjct: 63 MQALNLPRTFVTWVKVCMETPKFSVSINGELAGYFKGRRGLRQ 105
>emb|CAB45965.1| putative reverse transcriptase [Arabidopsis thaliana]
gi|7267919|emb|CAB78261.1| putative reverse
transcriptase [Arabidopsis thaliana]
Length = 662
Score = 98.6 bits (244), Expect = 8e-19
Identities = 43/97 (44%), Positives = 67/97 (69%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
QSAF++ RL+ +N+ L EL++ Y+ + RC + +D++KA+D+V W FLR L+ L F
Sbjct: 80 QSAFIKDRLLIENLLLATELVKDYHKDSVSERCAIKIDISKAFDSVQWSFLRNVLLTLDF 139
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P +FV W M CV +AS+S+++N + G+F RGLRQ
Sbjct: 140 PQEFVHWIMLCVTTASFSVQVNRELAGYFNSLRGLRQ 176
>gb|AAF87143.1|AC002423_8 T23E23.16 [Arabidopsis thaliana]
Length = 653
Score = 97.1 bits (240), Expect = 2e-18
Identities = 41/97 (42%), Positives = 68/97 (70%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
Q+AFV+ RL+ +N+ L EL++ Y+ + RC + +D++KA+++V W F+R L+ + F
Sbjct: 89 QTAFVKDRLLIENLLLATELVKDYHKESVSSRCAIKIDISKAFNSVQWSFIRNILLSMDF 148
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P +FV W M C+ +AS+S+++N + GFF KRGLRQ
Sbjct: 149 PMEFVHWIMLCISTASFSVQVNGELVGFFQSKRGLRQ 185
>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/102 (43%), Positives = 63/102 (61%)
Frame = +2
Query: 8 LIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFAL 187
+I P+QSAF+ GRL+S+N+ L E++ YN + R L VDL KA+D+V WDF+ A
Sbjct: 552 VISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAF 611
Query: 188 VHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
L P KFV W +C+ + +S+ +N GFF +GLRQ
Sbjct: 612 RALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQ 653
>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 893
Score = 96.7 bits (239), Expect = 3e-18
Identities = 44/102 (43%), Positives = 63/102 (61%)
Frame = +2
Query: 8 LIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFAL 187
+I P+QSAF+ GRL+S+N+ L E++ YN + R L VDL KA+D+V WDF+ A
Sbjct: 552 VISPSQSAFLPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAF 611
Query: 188 VHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
L P KFV W +C+ + +S+ +N GFF +GLRQ
Sbjct: 612 RALAVPEKFVCWINQCISTPYFSVMVNGSSSGFFKSNKGLRQ 653
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 96.3 bits (238), Expect = 4e-18
Identities = 45/103 (43%), Positives = 67/103 (65%)
Frame = +2
Query: 5 SLIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFA 184
S++ QSAFV+GR++ DNI L EL++ Y+ + RC + +DL KAY++V W F++
Sbjct: 224 SVVSENQSAFVKGRVIFDNIILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHL 283
Query: 185 LVHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
++ LGF KFV W M C+ +ASY+ IN + F K+GLRQ
Sbjct: 284 MLELGFSYKFVNWVMGCLTTASYTFNINGDLTRPFAAKKGLRQ 326
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 95.5 bits (236), Expect = 6e-18
Identities = 41/97 (42%), Positives = 65/97 (67%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
QSAFV+ RL+ +N+ L EL++ Y+ + RC + +D++KA+D+V W FL LV + F
Sbjct: 209 QSAFVKDRLLIENLLLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNF 268
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P F+ W C+ +AS+S+++N + G+F KRGLRQ
Sbjct: 269 SPTFIHWINLCITTASFSVQVNGDLVGYFQSKRGLRQ 305
>emb|CAA18234.1| putative protein [Arabidopsis thaliana] gi|7269488|emb|CAB79491.1|
putative protein [Arabidopsis thaliana]
Length = 1141
Score = 95.5 bits (236), Expect = 6e-18
Identities = 42/102 (41%), Positives = 67/102 (65%)
Frame = +2
Query: 8 LIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFAL 187
+I P+QSAF+ GRL+++N+ L E++ YN + R L VDL KA+D+V W+F+ AL
Sbjct: 529 VISPSQSAFLPGRLLAENVLLATEMVHGYNWRNISLRGMLKVDLRKAFDSVRWEFIIAAL 588
Query: 188 VHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
+ LG P KF+ W +C+ + ++++ +N GFF +GLRQ
Sbjct: 589 LALGVPTKFINWIHQCISTPTFTVSVNGCCGGFFKSAKGLRQ 630
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 95.1 bits (235), Expect = 8e-18
Identities = 43/101 (42%), Positives = 65/101 (64%)
Frame = +2
Query: 11 IDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALV 190
I P+QSAFV+GRL+++N+ L EL++ + + R L VDL KA+D+V W F+ L
Sbjct: 551 ISPSQSAFVKGRLLTENVLLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLK 610
Query: 191 HLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
PP+FV W +C+ S S+SI ++ + G+F G +GLRQ
Sbjct: 611 AANAPPRFVNWIKQCITSTSFSINVSGSLCGYFKGSKGLRQ 651
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 94.7 bits (234), Expect = 1e-17
Identities = 43/102 (42%), Positives = 64/102 (62%)
Frame = +2
Query: 8 LIDPAQSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFAL 187
+I P QSAF+ GR +++N+ L EL++ YN R L VDL KA+D++ WDF+ AL
Sbjct: 504 VISPFQSAFLPGRFLAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISAL 563
Query: 188 VHLGFPPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
+G P +FV W +C+ + ++S+ +N GFF RGLRQ
Sbjct: 564 KAIGIPDRFVYWITQCISTPTFSVCVNGNTGGFFKSTRGLRQ 605
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 92.4 bits (228), Expect = 5e-17
Identities = 40/97 (41%), Positives = 64/97 (65%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
QSAFV+ RL+ +N+ L EL++ Y+ + RC + +D++KA+D+V W FL LGF
Sbjct: 562 QSAFVKDRLLIENLLLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGF 621
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P +F+ W C+ +AS+S+++N + G+F RGLRQ
Sbjct: 622 PREFIHWINICITTASFSVQVNGELAGYFQSSRGLRQ 658
>gb|AAD32866.1|AC005489_4 F14N23.4 [Arabidopsis thaliana]
Length = 1161
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/97 (45%), Positives = 60/97 (61%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
Q F++GRL+ +N+ L EL+ + ET R L VD++KAYD V+W+FL L L
Sbjct: 599 QVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDL 658
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P F+ W C+ SASYSI N + GFF GK+G+RQ
Sbjct: 659 PLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQ 695
>dbj|BAF00918.1| putative reverse transcriptase [Arabidopsis thaliana]
Length = 910
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/97 (45%), Positives = 60/97 (61%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
Q F++GRL+ +N+ L EL+ + ET R L VD++KAYD V+W+FL L L
Sbjct: 556 QVGFIKGRLLCENVLLASELVDNFEADGETTRGCLQVDISKAYDNVNWEFLINILKALDL 615
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
P F+ W C+ SASYSI N + GFF GK+G+RQ
Sbjct: 616 PLVFIHWIWVCISSASYSIAFNGELIGFFQGKKGIRQ 652
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 92.4 bits (228), Expect = 5e-17
Identities = 40/93 (43%), Positives = 63/93 (67%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
QSAFV+ RL+ +N+ L EL++ Y+ + RC + +D++KA+D+V W FL+ L L F
Sbjct: 977 QSAFVKDRLLIENLLLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDF 1036
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKR 301
PP+FV W M CV +AS+S+++N + G+F R
Sbjct: 1037 PPEFVHWVMLCVTTASFSVQVNGELAGYFQSSR 1069
>gb|AAC19278.1| T14P8.10 [Arabidopsis thaliana] gi|7269009|emb|CAB80742.1|
AT4g02490 [Arabidopsis thaliana]
Length = 657
Score = 91.7 bits (226), Expect = 9e-17
Identities = 43/97 (44%), Positives = 59/97 (60%)
Frame = +2
Query: 23 QSAFVEGRLMSDNIFLVQELLRKYNVTRETRRCFLNVDLAKAYDTVSWDFLRFALVHLGF 202
Q F++GRL+ +N+ L EL+ + +T R L VDL KAYD V+W+FL L L
Sbjct: 103 QVGFIKGRLLCENVLLASELVDNFQAEGDTSRGCLQVDLTKAYDNVNWEFLINILKALNL 162
Query: 203 PPKFVAWTMECVCSASYSIKINNGIHGFFPGKRGLRQ 313
PP F+ W C+ + SYSI N + GFF GK+G+RQ
Sbjct: 163 PPIFINWIWVCISTPSYSIAYNGELIGFFVGKKGIRQ 199