BLASTX nr result
ID: Rheum21_contig00036267
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00036267
(236 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group] 89 6e-16
ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group] g... 89 6e-16
gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group] gi|... 89 6e-16
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana] 84 1e-14
gb|AAD17351.1| contains similarity to retrovirus-related polypro... 84 3e-14
gb|AAP43914.1| integrase [Gossypium raimondii] 83 3e-14
gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group] 83 4e-14
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 82 6e-14
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 82 1e-13
gb|AAX14649.1| gag-pol polyprotein [Setaria pumila] 81 2e-13
gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex] 81 2e-13
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 81 2e-13
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 81 2e-13
ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664... 80 2e-13
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 80 2e-13
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 80 2e-13
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 80 3e-13
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 80 3e-13
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 80 3e-13
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni... 80 3e-13
>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1713
Score = 89.0 bits (219), Expect = 6e-16
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W ++ Q + CV+CHK K++ +P GLYTPLP+P PWED+SMDF+ GLP +K
Sbjct: 1224 HFYWPK-MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTK 1282
Query: 192 RGKE------HRFSKMAHFI 233
RG++ RFSKMAHFI
Sbjct: 1283 RGRDSIFVVVDRFSKMAHFI 1302
>ref|NP_001063540.1| Os09g0491900 [Oryza sativa Japonica Group]
gi|113631773|dbj|BAF25454.1| Os09g0491900 [Oryza sativa
Japonica Group]
Length = 681
Score = 89.0 bits (219), Expect = 6e-16
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W ++ Q + CV+CHK K++ +P GLYTPLP+P PWED+SMDF+ GLP +K
Sbjct: 192 HFYWPK-MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTK 250
Query: 192 RGKE------HRFSKMAHFI 233
RG++ RFSKMAHFI
Sbjct: 251 RGRDSIFVVVDRFSKMAHFI 270
>gb|AAT85159.1| unknown protein [Oryza sativa Japonica Group]
gi|52353557|gb|AAU44123.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 681
Score = 89.0 bits (219), Expect = 6e-16
Identities = 41/80 (51%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W ++ Q + CV+CHK K++ +P GLYTPLP+P PWED+SMDF+ GLP +K
Sbjct: 192 HFYWPK-MRRDVQRLVQRCVTCHKAKSKLNPHGLYTPLPVPSAPWEDISMDFVLGLPRTK 250
Query: 192 RGKE------HRFSKMAHFI 233
RG++ RFSKMAHFI
Sbjct: 251 RGRDSIFVVVDRFSKMAHFI 270
>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
Length = 1887
Score = 84.3 bits (207), Expect = 1e-14
Identities = 38/65 (58%), Positives = 46/65 (70%), Gaps = 6/65 (9%)
Frame = +3
Query: 57 CEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSKRGKE------HRFSK 218
CE C +C + KA+S P GLYTPLPIP PW D+SMDF+ GLP ++ GK+ RFSK
Sbjct: 1426 CERCPTCKQAKAKSQPHGLYTPLPIPSHPWNDISMDFVVGLPRTRTGKDSIFVVVDRFSK 1485
Query: 219 MAHFI 233
MAHFI
Sbjct: 1486 MAHFI 1490
>gb|AAD17351.1| contains similarity to retrovirus-related polyproteins and to CCHC
zinc finger protein (Pfam: PF00098, Score=16.3, E=0.051,
E= 1) [Arabidopsis thaliana] gi|7267432|emb|CAB77944.1|
putative polyprotein [Arabidopsis thaliana]
Length = 1138
Score = 83.6 bits (205), Expect = 3e-14
Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W ++ + CE C +C + KA+S P GL TPLPIP+ PW D+SMDF+ GLP ++
Sbjct: 787 HFHWPH-MKRDVERMCERCTTCKQAKAKSQPHGLCTPLPIPLHPWNDISMDFVVGLPRTR 845
Query: 192 RGKE------HRFSKMAHFI 233
GK+ RFSKMAHFI
Sbjct: 846 TGKDSIFVVVDRFSKMAHFI 865
>gb|AAP43914.1| integrase [Gossypium raimondii]
Length = 340
Score = 83.2 bits (204), Expect = 3e-14
Identities = 36/81 (44%), Positives = 53/81 (65%), Gaps = 6/81 (7%)
Frame = +3
Query: 9 QHLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLS 188
+H W ++ +L + C C++C + K+ P GLYTPLP+P PW D+S+DF+ GLP++
Sbjct: 190 EHFYWPNMRKLVEKI-CSTCITCKQDKSTVMPHGLYTPLPVPSSPWTDISIDFVIGLPIT 248
Query: 189 KRGKE------HRFSKMAHFI 233
K G++ RFSKMAHFI
Sbjct: 249 KHGRDSIFVVVDRFSKMAHFI 269
>gb|AAU90169.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1154
Score = 82.8 bits (203), Expect = 4e-14
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 6/62 (9%)
Frame = +3
Query: 66 CVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSKRGKE------HRFSKMAH 227
CV+ HK K++ +P GLYTPLP+P PWED+SMDF+ GLP ++RG++ RFSKMAH
Sbjct: 840 CVTSHKAKSKLNPHGLYTPLPVPNAPWEDISMDFVLGLPRTRRGRDSIFVAVDRFSKMAH 899
Query: 228 FI 233
FI
Sbjct: 900 FI 901
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 82.4 bits (202), Expect = 6e-14
Identities = 39/80 (48%), Positives = 52/80 (65%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
HL W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1145 HLFWPKMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 1203
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 1204 KGRDSIFVVVDRFSKMAHFI 1223
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 81.6 bits (200), Expect = 1e-13
Identities = 39/80 (48%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1221 HFFWPQMRRDVGRFVAR-CATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTK 1279
Query: 192 RGKE------HRFSKMAHFI 233
RG++ RFSKMAHFI
Sbjct: 1280 RGRDSIFVVVDRFSKMAHFI 1299
>gb|AAX14649.1| gag-pol polyprotein [Setaria pumila]
Length = 185
Score = 80.9 bits (198), Expect = 2e-13
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP ++
Sbjct: 37 HFFWPKMRRDVKRFVAR-CTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVMGLPRTR 95
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 96 KGRDSVFVVVDRFSKMAHFI 115
>gb|ABC50100.1| gag-pol polyprotein [Bambusa multiplex]
Length = 227
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 37 HFFWPKMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 95
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 96 KGRDSIFVVVDRFSKMAHFI 115
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 562 HFFWPKMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 620
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 621 KGRDSIFVVVDRFSKMAHFI 640
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 80.9 bits (198), Expect = 2e-13
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1249 HFFWPKMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 1307
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 1308 KGRDSIFVVVDRFSKMAHFI 1327
>ref|XP_006596896.1| PREDICTED: uncharacterized protein LOC102664455 [Glycine max]
Length = 1176
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/81 (46%), Positives = 51/81 (62%), Gaps = 6/81 (7%)
Frame = +3
Query: 9 QHLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLS 188
+H W + + +F C C+ C + K++ P GLYTPLP+P PW D+SMDF+ GLP +
Sbjct: 817 EHFFWPHMRRDVHKF-CGHCIVCKQAKSKVKPHGLYTPLPVPEYPWTDISMDFVLGLPKT 875
Query: 189 KRGKE------HRFSKMAHFI 233
K GK+ RFSKMAHFI
Sbjct: 876 KNGKDSVFVVVDRFSKMAHFI 896
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1280 HFFWPRMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 1338
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 1339 KGRDSIFVVVDRFSKMAHFI 1358
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 80.5 bits (197), Expect = 2e-13
Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1277 HFFWPRMRRDVERFVAR-CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 1335
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 1336 KGRDSIFVVVDRFSKMAHFI 1355
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 80.1 bits (196), Expect = 3e-13
Identities = 35/62 (56%), Positives = 45/62 (72%), Gaps = 6/62 (9%)
Frame = +3
Query: 66 CVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSKRGKE------HRFSKMAH 227
C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +K+G++ RFSKMAH
Sbjct: 1266 CTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDSIFVVVDRFSKMAH 1325
Query: 228 FI 233
FI
Sbjct: 1326 FI 1327
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 80.1 bits (196), Expect = 3e-13
Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 6/62 (9%)
Frame = +3
Query: 66 CVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSKRGKE------HRFSKMAH 227
C +C K K+R +P GLY PLP+P PWED+SMDF+ GLP +++G++ RFSKMAH
Sbjct: 1241 CTTCQKAKSRLNPHGLYLPLPVPSAPWEDISMDFVLGLPRTRKGRDSVFVVVDRFSKMAH 1300
Query: 228 FI 233
FI
Sbjct: 1301 FI 1302
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/80 (47%), Positives = 50/80 (62%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K R +P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1249 HFFWPKMRRDVERFVAR-CTTCQKAKLRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTK 1307
Query: 192 RGKE------HRFSKMAHFI 233
+G++ RFSKMAHFI
Sbjct: 1308 KGRDSIFVVVDRFSKMAHFI 1327
>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 80.1 bits (196), Expect = 3e-13
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 6/80 (7%)
Frame = +3
Query: 12 HLQWTSILQLFTQFQCEGCVSCHKGKARSSPQGLYTPLPIPVGPWEDLSMDFITGLPLSK 191
H W + + +F C +C K K+R P GLY PLP+P PWED+SMDF+ GLP +K
Sbjct: 1200 HFFWPQMRRDVGRFVAR-CATCQKAKSRLHPHGLYMPLPVPTVPWEDISMDFVLGLPRTK 1258
Query: 192 RGKE------HRFSKMAHFI 233
RG++ RFSKM HFI
Sbjct: 1259 RGRDSIFVVVDRFSKMVHFI 1278