BLASTX nr result
ID: Rheum21_contig00035143
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00035143
(547 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptas... 127 2e-31
emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulga... 125 3e-29
emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulga... 130 9e-29
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana] 114 3e-27
gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transc... 119 2e-26
gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana] 122 7e-26
gb|AAC67331.1| putative non-LTR retroelement reverse transcripta... 116 1e-25
gb|ABD96942.1| hypothetical protein [Cleome spinosa] 116 4e-25
dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like ... 114 5e-25
dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like ... 112 5e-25
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana] 112 5e-25
ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624... 116 9e-25
ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256... 116 1e-24
gb|AAC33226.1| putative non-LTR retroelement reverse transcripta... 117 2e-24
gb|AAD15471.1| putative non-LTR retroelement reverse transcripta... 117 2e-24
gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana] 112 3e-24
gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00... 107 7e-24
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip... 111 9e-24
ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein A... 111 2e-23
ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298... 110 2e-23
>gb|ABD33261.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
truncatula]
Length = 402
Score = 127 bits (318), Expect(3) = 2e-31
Identities = 60/139 (43%), Positives = 90/139 (64%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K +V +FRPIACC+VIYK I+K++ SR+Q VL +V + Q AF+KGR I NI
Sbjct: 184 LLPKEVNVTSVKNFRPIACCSVIYKIISKILTSRMQGVLNSVVSENQSAFVKGRVIFDNI 243
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y RK SPRC +KIDL+KAY+++ F+ ++ G + +NW+M C+T
Sbjct: 244 ILSHELVKSYSRKGISPRCMVKIDLQKAYNSVEWPFIKHLMLELGFSYKFVNWVMGCLTT 303
Query: 448 NTLKINFEGELT*YFPCKR 504
+ N G+LT F K+
Sbjct: 304 ASYTFNINGDLTRPFAAKK 322
Score = 29.6 bits (65), Expect(3) = 2e-31
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIARL 95
I+G + DAILDFF+ G + K I+C+ + L
Sbjct: 155 IIGDSVIDAILDFFKTGFMPKIINCTYMTLL 185
Score = 25.4 bits (54), Expect(3) = 2e-31
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +3
Query: 504 ACKRALRQGDPLAP 545
A K+ LRQGDP++P
Sbjct: 319 AAKKGLRQGDPISP 332
>emb|CCA65981.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1114
Score = 125 bits (313), Expect(3) = 3e-29
Identities = 57/129 (44%), Positives = 83/129 (64%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K+D+ D+RPIACC+ +YK I+K++ RLQ V+ ++VD AQ FI R I NI
Sbjct: 504 LIPKIDEAKHAKDYRPIACCSTLYKIISKILTKRLQAVITEVVDCAQTGFIPERHIGDNI 563
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +LI+GY R++ SPRC IK+D+RKAYD++ +FL +L+ G I WIM CV
Sbjct: 564 LLATELIRGYNRRHVSPRCVIKVDIRKAYDSVEWVFLESMLKELGFPSMFIRWIMACVKT 623
Query: 448 NTLKINFEG 474
+ I G
Sbjct: 624 VSYSILLNG 632
Score = 25.4 bits (54), Expect(3) = 3e-29
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 24 DAILDFFQKGRLLKEISCSTI 86
+ ILDFF+ G + K I+C+ +
Sbjct: 482 EGILDFFENGFMHKPINCTAV 502
Score = 23.9 bits (50), Expect(3) = 3e-29
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 486 ILSLQTACKRALRQGDPLAP 545
I S+ ++ LRQGDPL+P
Sbjct: 633 IPSIPFDAQKGLRQGDPLSP 652
>emb|CCA65979.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1110
Score = 130 bits (326), Expect(2) = 9e-29
Identities = 60/139 (43%), Positives = 92/139 (66%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ KV V +FRPIACCTVIYK I+K++ +R++ ++ ++V++AQ FI GR I NI
Sbjct: 501 LLPKVQHATRVKEFRPIACCTVIYKIISKMLTNRMKGIIGEVVNEAQSGFIPGRHIADNI 560
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +LI+GY RK+ SPRC +K+D+RKAYD++ FL +L FG R + WIM+CV+
Sbjct: 561 LLASELIRGYTRKHMSPRCIMKVDIRKAYDSVEWSFLETLLYEFGFPSRFVGWIMECVST 620
Query: 448 NTLKINFEGELT*YFPCKR 504
+ + G T F ++
Sbjct: 621 VSYSVLVNGIPTQPFQARK 639
Score = 22.7 bits (47), Expect(2) = 9e-29
Identities = 7/12 (58%), Positives = 11/12 (91%)
Frame = +3
Query: 510 KRALRQGDPLAP 545
++ LRQGDP++P
Sbjct: 638 RKGLRQGDPMSP 649
>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
Length = 1213
Score = 114 bits (284), Expect(3) = 3e-27
Identities = 53/150 (35%), Positives = 85/150 (56%)
Frame = +1
Query: 85 LLVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHN 264
+L+ K+ P +DFRPI+C +YK I +L+ RLQ +L ++ AQ AF+ GRS+ N
Sbjct: 509 VLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAFLPGRSLAEN 568
Query: 265 IVVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVT 444
+++ DL+ GY SPR +K+DL+KA+D++ F+ L+ + ++ INWI QC++
Sbjct: 569 VLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKFINWISQCIS 628
Query: 445 RNTLKINFEGELT*YFPCKRLANGHFAKET 534
T ++ G NG F K T
Sbjct: 629 TPTFTVSING-----------GNGGFFKST 647
Score = 31.2 bits (69), Expect(3) = 3e-27
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTI 86
IVG TDAI +FF G LLK+ + +TI
Sbjct: 481 IVGAEVTDAIKEFFSSGCLLKQWNATTI 508
Score = 22.7 bits (47), Expect(3) = 3e-27
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
+ LRQGDPL+P
Sbjct: 648 KGLRQGDPLSP 658
>gb|AAM82604.1|AF525305_2 putative AP endonuclease/reverse transcriptase [Brassica napus]
Length = 1214
Score = 119 bits (297), Expect(3) = 2e-26
Identities = 52/135 (38%), Positives = 84/135 (62%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
+V K + + +FRPI+CC IYK I+KL+ RL+ +LP + +Q AF+KGR + N+
Sbjct: 509 MVPKKPNADRITEFRPISCCNAIYKVISKLLARRLENILPLWISPSQSAFVKGRLLTENV 568
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L++G+G+ S R +K+DLRKA+D++ F+ + L+ R +NWI QC+T
Sbjct: 569 LLATELVQGFGQANISSRGVLKVDLRKAFDSVGWGFIIETLKAANAPPRFVNWIKQCITS 628
Query: 448 NTLKINFEGELT*YF 492
+ IN G L YF
Sbjct: 629 TSFSINVSGSLCGYF 643
Score = 23.5 bits (49), Expect(3) = 2e-26
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTI 86
IVG + A+ +FF+ GRLL + + + +
Sbjct: 480 IVGPSLIAAVQEFFRSGRLLGQWNSTAV 507
Score = 22.7 bits (47), Expect(3) = 2e-26
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
+ LRQGDPL+P
Sbjct: 647 KGLRQGDPLSP 657
>gb|AAF99785.1|AC012463_2 T2E6.4 [Arabidopsis thaliana]
Length = 740
Score = 122 bits (305), Expect = 7e-26
Identities = 54/139 (38%), Positives = 86/139 (61%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K D+ + D+RPI+CC VIYK I+K+I +RL+V+LP + Q Q AF++ R + N+
Sbjct: 89 LIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLIENV 148
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y + SPRCA+KID+ KA+D++ FL L+ + +WI C++
Sbjct: 149 LLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALNFPENFCHWIKLCIST 208
Query: 448 NTLKINFEGELT*YFPCKR 504
T + GEL +F KR
Sbjct: 209 ATFSVQVNGELAGFFGSKR 227
>gb|AAC67331.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1449
Score = 116 bits (291), Expect(2) = 1e-25
Identities = 55/139 (39%), Positives = 83/139 (59%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K + + D+RPI+CC VIYK I+K+I +RL+ VLP+ + Q AF+K R + N+
Sbjct: 931 LIPKKLEAKEMKDYRPISCCNVIYKVISKIIANRLKHVLPNFIAGNQSAFVKDRLLIENL 990
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y + S RCAIKID+ KA+D++ FL VL ++W+M CVT
Sbjct: 991 LLATELVKDYHKDTISGRCAIKIDISKAFDSVQWSFLKNVLSALDFPPEFVHWVMLCVTT 1050
Query: 448 NTLKINFEGELT*YFPCKR 504
+ + GEL YF R
Sbjct: 1051 ASFSVQVNGELAGYFQSSR 1069
Score = 25.4 bits (54), Expect(2) = 1e-25
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIA 89
I+G F A+ FF+KG L K ++ + +A
Sbjct: 902 IIGAEFVLAVKSFFEKGFLPKGVNTTILA 930
>gb|ABD96942.1| hypothetical protein [Cleome spinosa]
Length = 402
Score = 116 bits (291), Expect(2) = 4e-25
Identities = 56/143 (39%), Positives = 88/143 (61%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
LV K+ + + DFRPI+CC +YK I+K+I +RLQ++LP L+ Q AF KGRS+ +I
Sbjct: 20 LVPKIPEAINLGDFRPISCCNFLYKVISKIIANRLQLLLPWLISGNQAAFQKGRSMGDHI 79
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y R P +KID++KA+D+I+ F+ +L+ L I WI +C+T
Sbjct: 80 MLAAELVKDYNRPSAEPSAMLKIDIKKAFDSISWDFILDILRALDLPLVFIGWIRECITS 139
Query: 448 NTLKINFEGELT*YFPCKRLANG 516
+ + GEL +F KR+ G
Sbjct: 140 PSFSVAINGELAGFFRGKRVIYG 162
Score = 23.9 bits (50), Expect(2) = 4e-25
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +3
Query: 33 LDFFQKGRLLKEISCSTI 86
++FF+ G+LLKE++ + I
Sbjct: 1 MEFFRNGKLLKELNATII 18
>dbj|BAB09379.1| non-LTR retroelement reverse transcriptase-like protein
[Arabidopsis thaliana]
Length = 1223
Score = 114 bits (285), Expect(2) = 5e-25
Identities = 54/139 (38%), Positives = 82/139 (58%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K + + D+RPI+CC V+YK I+K+I +RL++VLP + Q AF+K R + N+
Sbjct: 516 LIPKKTEAREMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIAGNQSAFVKDRLLIENL 575
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y + S RCAIKID+ KA+D++ FL V G I+WI C+T
Sbjct: 576 LLATELVKDYHKDTISTRCAIKIDISKAFDSVQWPFLINVFTILGFPREFIHWINICITT 635
Query: 448 NTLKINFEGELT*YFPCKR 504
+ + GEL YF R
Sbjct: 636 ASFSVQVNGELAGYFQSSR 654
Score = 25.8 bits (55), Expect(2) = 5e-25
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIA 89
I+G FT A+ FF KG L K I+ + +A
Sbjct: 487 IIGDEFTLAVQSFFTKGFLPKGINSTILA 515
>dbj|BAA97290.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 1072
Score = 112 bits (280), Expect(3) = 5e-25
Identities = 50/136 (36%), Positives = 85/136 (62%)
Frame = +1
Query: 85 LLVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHN 264
+L+ K T+++FRPI+C +YK I+KL+ SRLQ +L ++ +Q AF+ GRS+ N
Sbjct: 369 VLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAEN 428
Query: 265 IVVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVT 444
+++ +++ GY R SPR +K+DL+KA+D++ F+ L+ + +R INWI QC+T
Sbjct: 429 VLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCIT 488
Query: 445 RNTLKINFEGELT*YF 492
+ I+ G +F
Sbjct: 489 TPSFTISVNGATGGFF 504
Score = 25.0 bits (53), Expect(3) = 5e-25
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTI 86
I+G AI +FF G+LLK+ + +T+
Sbjct: 341 IIGPEVLAAIHEFFDSGQLLKQWNATTL 368
Score = 22.7 bits (47), Expect(3) = 5e-25
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
+ LRQGDPL+P
Sbjct: 508 KGLRQGDPLSP 518
>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
Length = 1072
Score = 112 bits (280), Expect(3) = 5e-25
Identities = 50/136 (36%), Positives = 85/136 (62%)
Frame = +1
Query: 85 LLVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHN 264
+L+ K T+++FRPI+C +YK I+KL+ SRLQ +L ++ +Q AF+ GRS+ N
Sbjct: 369 VLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAFLPGRSLAEN 428
Query: 265 IVVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVT 444
+++ +++ GY R SPR +K+DL+KA+D++ F+ L+ + +R INWI QC+T
Sbjct: 429 VLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERYINWIHQCIT 488
Query: 445 RNTLKINFEGELT*YF 492
+ I+ G +F
Sbjct: 489 TPSFTISVNGATGGFF 504
Score = 25.0 bits (53), Expect(3) = 5e-25
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTI 86
I+G AI +FF G+LLK+ + +T+
Sbjct: 341 IIGPEVLAAIHEFFDSGQLLKQWNATTL 368
Score = 22.7 bits (47), Expect(3) = 5e-25
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
+ LRQGDPL+P
Sbjct: 508 KGLRQGDPLSP 518
>ref|XP_006490008.1| PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
Length = 1635
Score = 116 bits (290), Expect(2) = 9e-25
Identities = 58/134 (43%), Positives = 89/134 (66%), Gaps = 1/134 (0%)
Frame = +1
Query: 85 LLVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHN 264
+L+ K++QP + + +RPI+ CTV+YKTITK+I +RLQ +LP+L+ Q +F+ GR I N
Sbjct: 987 VLIPKIEQPTSFSMYRPISLCTVMYKTITKIIANRLQELLPELIGPHQTSFVPGRHITEN 1046
Query: 265 IVVCQDLIKGYGRKY-TSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCV 441
I+V Q++I RK AIK+DL KAYD ++ F+ + LQ L +IN IM+C+
Sbjct: 1047 IIVAQEIIHSMRRKKGRKGFMAIKVDLGKAYDRLSWTFIQETLQELNLPTMLINLIMECI 1106
Query: 442 TRNTLKINFEGELT 483
T T+ + + GEL+
Sbjct: 1107 TTATMNVLWNGELS 1120
Score = 23.1 bits (48), Expect(2) = 9e-25
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +3
Query: 489 LSLQTACKRALRQGDPLAP 545
LS + R +RQGDPL+P
Sbjct: 1119 LSSEFCPGRGVRQGDPLSP 1137
>ref|XP_004247247.1| PREDICTED: uncharacterized protein LOC101256917 [Solanum
lycopersicum]
Length = 421
Score = 116 bits (290), Expect(2) = 1e-24
Identities = 57/140 (40%), Positives = 81/140 (57%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ KV P V ++R I CCTV+YK I+K+I +R+ V+ +++ +Q FI GR I NI
Sbjct: 169 LIPKVQSPKNVKEYRTITCCTVLYKIISKVITNRMHDVIHNVICDSQVGFILGRKISENI 228
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+ Y RK SPR +KIDL+K YD++ FL QV+ G G D W+M CV
Sbjct: 229 LLAHELVNSYTRKNISPRSMLKIDLQKVYDSVEWPFLKQVMVGLGFPDMFTQWVMHCVKT 288
Query: 448 NTLKINFEGELT*YFPCKRL 507
I G+ T F RL
Sbjct: 289 VNYTIVVNGQTTQRFDAARL 308
Score = 22.7 bits (47), Expect(2) = 1e-24
Identities = 7/29 (24%), Positives = 17/29 (58%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIA 89
I+ + + + FF+ G+L K +C+ ++
Sbjct: 140 IIKNDIIEVVQSFFKPGKLFKPFNCTLVS 168
>gb|AAC33226.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1529
Score = 117 bits (293), Expect = 2e-24
Identities = 50/139 (35%), Positives = 86/139 (61%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K D+ + D+RPI+CC V+YK I+K++ +RL+++LP + Q Q AF+K R + N+
Sbjct: 813 LIPKKDEAIEMKDYRPISCCNVLYKVISKILANRLKLLLPSFILQNQSAFVKERLLMENV 872
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y ++ +PRCA+KID+ KA+D++ FL L+ + +WI C++
Sbjct: 873 LLATELVKDYHKESVTPRCAMKIDISKAFDSVQWQFLLNTLEALNFPETFRHWIKLCIST 932
Query: 448 NTLKINFEGELT*YFPCKR 504
T + GEL +F R
Sbjct: 933 ATFSVQVNGELAGFFGSSR 951
>gb|AAD15471.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1277
Score = 117 bits (293), Expect = 2e-24
Identities = 52/139 (37%), Positives = 85/139 (61%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K D+ + D+RPI+CC VIYK I+K+I +RL+V+LP + Q Q AF++ R + N+
Sbjct: 658 LIPKKDEATLMRDYRPISCCNVIYKVISKIIANRLKVMLPTFILQNQSAFVRERLLMENV 717
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y + SPRCA+KID+ KA+D++ FL L+ ++ +WI C++
Sbjct: 718 LLATELVKDYHKDSISPRCAMKIDISKAFDSVQWQFLLNTLEALKFPEKFRHWIKLCIST 777
Query: 448 NTLKINFEGELT*YFPCKR 504
T + E +F KR
Sbjct: 778 ATFSVQVNSEQAGFFGSKR 796
>gb|AAF98181.1|AC000107_4 F17F8.5 [Arabidopsis thaliana]
Length = 872
Score = 112 bits (280), Expect(2) = 3e-24
Identities = 52/139 (37%), Positives = 82/139 (58%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K + D+RPI+CC V+YK I+K+I +RL+++LP + + Q AF+K R + N+
Sbjct: 163 LIPKKLAAKEMRDYRPISCCNVLYKVISKIIANRLKLLLPRFIAENQSAFVKDRLLIENL 222
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +L+K Y + S RCAIKID+ KA+D++ FL L I+WI C+T
Sbjct: 223 LLATELVKDYHKDSISARCAIKIDISKAFDSVQWSFLTNTLVAMNFSPTFIHWINLCITT 282
Query: 448 NTLKINFEGELT*YFPCKR 504
+ + G+L YF KR
Sbjct: 283 ASFSVQVNGDLVGYFQSKR 301
Score = 25.0 bits (53), Expect(2) = 3e-24
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIA 89
I+G FT + FFQKG L K I+ +A
Sbjct: 134 IIGQEFTLPVQSFFQKGFLPKGINSIILA 162
>gb|AAD21699.1| Contains reverse transcriptase domain (rvt) PF|00078 [Arabidopsis
thaliana]
Length = 1253
Score = 107 bits (268), Expect(3) = 7e-24
Identities = 50/144 (34%), Positives = 84/144 (58%), Gaps = 4/144 (2%)
Frame = +1
Query: 85 LLVSKVDQPNTVNDFRPIACCT----VIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRS 252
+L+ K+ + +NDFRPI+C +YK I +L+ +RLQ +L ++ Q AF+ GR
Sbjct: 458 VLIPKITNASKMNDFRPISCNDFGPITLYKVIARLLTNRLQCLLSQVISPFQSAFLPGRF 517
Query: 253 IRHNIVVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIM 432
+ N+++ +L++GY R+ PR +K+DLRKA+D+I F+ L+ G+ DR + WI
Sbjct: 518 LAENVLLATELVQGYNRQNIDPRGMLKVDLRKAFDSIRWDFIISALKAIGIPDRFVYWIT 577
Query: 433 QCVTRNTLKINFEGELT*YFPCKR 504
QC++ T + G +F R
Sbjct: 578 QCISTPTFSVCVNGNTGGFFKSTR 601
Score = 26.6 bits (57), Expect(3) = 7e-24
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTI 86
++G TDA+ +FF LLK+ + +T+
Sbjct: 430 VIGTEVTDAVSEFFTSSVLLKQWNATTL 457
Score = 21.9 bits (45), Expect(3) = 7e-24
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
R LRQG+PL+P
Sbjct: 601 RGLRQGNPLSP 611
>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
72.31) [Arabidopsis thaliana]
Length = 928
Score = 111 bits (277), Expect(2) = 9e-24
Identities = 50/139 (35%), Positives = 81/139 (58%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ K + + D+RPI+CC V+YK I+K+I +RL++VLP + Q AF+K R + N+
Sbjct: 404 LIPKKKEAKEMKDYRPISCCNVLYKVISKIIANRLKLVLPKFIVGNQSAFVKDRLLIENV 463
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ +++K Y + S RCA+KID+ KA+D++ FL VL+ +WI C+T
Sbjct: 464 LLATEIVKDYHKDSVSSRCALKIDISKAFDSVQWKFLINVLEAMNFPPEFTHWITLCITT 523
Query: 448 NTLKINFEGELT*YFPCKR 504
+ + GEL F R
Sbjct: 524 ASFSVQVNGELAGVFSSAR 542
Score = 24.6 bits (52), Expect(2) = 9e-24
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 3 IVGINFTDAILDFFQKGRLLKEISCSTIA 89
I+G F AI FF KG L K I+ + +A
Sbjct: 375 IIGAEFILAIQSFFAKGFLPKGINSTILA 403
>ref|XP_004301927.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 968
Score = 111 bits (277), Expect(2) = 2e-23
Identities = 56/132 (42%), Positives = 81/132 (61%), Gaps = 2/132 (1%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
L+ KV+ P V DFRPI+ C VIYK I+K IV+RL+ VLPD++ Q Q AF GR I N+
Sbjct: 120 LIPKVENPQQVPDFRPISLCNVIYKLISKAIVNRLKGVLPDVISQFQSAFGPGRCIHDNV 179
Query: 268 VVCQDLIKGYGRKYT--SPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCV 441
+ +LI + T P C +K+D+ KAYD + +FL VL FG ++++ IM+CV
Sbjct: 180 ITAFELIHSIKTRQTGDQPHCVLKLDISKAYDWVEWVFLQGVLTKFGFDEKLVELIMRCV 239
Query: 442 TRNTLKINFEGE 477
+ + + GE
Sbjct: 240 RSVSFSVLWNGE 251
Score = 23.9 bits (50), Expect(2) = 2e-23
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +3
Query: 513 RALRQGDPLAP 545
R LRQGDPL+P
Sbjct: 260 RGLRQGDPLSP 270
>ref|XP_004293181.1| PREDICTED: uncharacterized protein LOC101298394 [Fragaria vesca
subsp. vesca]
Length = 958
Score = 110 bits (274), Expect(2) = 2e-23
Identities = 54/139 (38%), Positives = 78/139 (56%)
Frame = +1
Query: 88 LVSKVDQPNTVNDFRPIACCTVIYKTITKLIVSRLQVVLPDLVDQAQGAFIKGRSIRHNI 267
LV KV P T++DFRPI+CC YK I KL+ +RL+ L +V +Q FI GR I NI
Sbjct: 337 LVPKVANPTTMSDFRPISCCNTFYKIIAKLLANRLKGTLHLIVGPSQSTFIPGRRIGDNI 396
Query: 268 VVCQDLIKGYGRKYTSPRCAIKIDLRKAYDTIN*MFLYQVLQGFGLHDRMINWIMQCVTR 447
++ Q++I Y + PRC +D+ KA DT+ F+ LQ F + +I WI C++
Sbjct: 397 LLAQEIICDYHKADGQPRCTFMVDMMKANDTVEWDFIIATLQAFNIPSTLIGWIKSCISS 456
Query: 448 NTLKINFEGELT*YFPCKR 504
+ GEL +F +R
Sbjct: 457 AKFSVCVNGELAGFFARRR 475
Score = 25.0 bits (53), Expect(2) = 2e-23
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +3
Query: 504 ACKRALRQGDPLAP 545
A +R LRQGDPL+P
Sbjct: 472 ARRRGLRQGDPLSP 485