BLASTX nr result

ID: Rheum21_contig00033364 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00033364
         (296 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35069.3| unnamed protein product [Vitis vinifera]              129   5e-28
ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III s...   129   5e-28
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...   129   5e-28
ref|XP_004951189.1| PREDICTED: DNA-directed RNA polymerase III s...   127   1e-27
gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor...   126   3e-27
gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma ...   126   3e-27
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ...   126   3e-27
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ...   126   3e-27
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...   126   3e-27
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...   126   3e-27
ref|XP_006583558.1| PREDICTED: DNA-directed RNA polymerase III s...   125   6e-27
ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III s...   125   6e-27
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...   125   6e-27
ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, par...   125   6e-27
ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, par...   125   6e-27
ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III s...   125   6e-27
ref|XP_006572933.1| PREDICTED: DNA-directed RNA polymerase III s...   125   8e-27
ref|XP_006572932.1| PREDICTED: DNA-directed RNA polymerase III s...   125   8e-27
gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus...   125   8e-27
ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III s...   125   8e-27

>emb|CBI35069.3| unnamed protein product [Vitis vinifera]
          Length = 1309

 Score =  129 bits (323), Expect = 5e-28
 Identities = 64/97 (65%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLY KD++ELARLGECPLDPGGYFVVKGTEKVIL+QEQLS NRII D 
Sbjct: 150 GRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDT 209

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+EKEKI++Q+NQF
Sbjct: 210 DKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQF 246


>ref|XP_002265454.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Vitis
           vinifera]
          Length = 1142

 Score =  129 bits (323), Expect = 5e-28
 Identities = 64/97 (65%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLY KD++ELARLGECPLDPGGYFVVKGTEKVIL+QEQLS NRII D 
Sbjct: 132 GRMPIMLRSCCCVLYKKDEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDT 191

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+EKEKI++Q+NQF
Sbjct: 192 DKKGNINASVTSSTESTKSKTVIVMEKEKIWLQLNQF 228


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA
           polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score =  129 bits (323), Expect = 5e-28
 Identities = 63/97 (64%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS SCVLYGKD++ELARLGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 148 GRMPIMLRSRSCVLYGKDEAELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 207

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEK+Y+ +NQF
Sbjct: 208 DKKGNINASVTSSTEATKSKTIIQMEKEKMYLCLNQF 244


>ref|XP_004951189.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X1 [Setaria italica]
          Length = 1154

 Score =  127 bits (320), Expect = 1e-27
 Identities = 61/97 (62%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS +C+L+GKD++ELARLGECPLDPGGYF+VKGTEKVIL+QEQLS NRII D 
Sbjct: 144 GYMPIMLRSYACILHGKDEAELARLGECPLDPGGYFIVKGTEKVILIQEQLSKNRIIIDT 203

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           D KG +I                 L+KEKIY+Q+NQF
Sbjct: 204 DSKGRVIASVTSSTHEIKSKTVITLDKEKIYLQLNQF 240


>gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
          Length = 786

 Score =  126 bits (317), Expect = 3e-27
 Identities = 60/97 (61%), Positives = 72/97 (74%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELA+LGECPLDPGGYF+VKGTEKV+L+QEQLS NRII D 
Sbjct: 193 GRMPIMLRSCCCVLYGKDEAELAKLGECPLDPGGYFIVKGTEKVLLIQEQLSKNRIIIDT 252

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEK+Y+ +NQF
Sbjct: 253 DKKGNINASVTSSSEAIKSKTVIQMEKEKLYLMLNQF 289


>gb|EOY19615.1| DNA-directed RNA polymerase isoform 7 [Theobroma cacao]
          Length = 1082

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/97 (63%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELARLGECPLDPGGYFV+KG EKVIL+QEQLS NRII D 
Sbjct: 51  GRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDA 110

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEKIY+ +NQF
Sbjct: 111 DKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQF 147


>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
          Length = 1034

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/97 (63%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELARLGECPLDPGGYFV+KG EKVIL+QEQLS NRII D 
Sbjct: 150 GRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDA 209

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEKIY+ +NQF
Sbjct: 210 DKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQF 246


>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
          Length = 1034

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/97 (63%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELARLGECPLDPGGYFV+KG EKVIL+QEQLS NRII D 
Sbjct: 150 GRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDA 209

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEKIY+ +NQF
Sbjct: 210 DKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQF 246


>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 1011

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/97 (63%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELARLGECPLDPGGYFV+KG EKVIL+QEQLS NRII D 
Sbjct: 150 GRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDA 209

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEKIY+ +NQF
Sbjct: 210 DKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQF 246


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score =  126 bits (317), Expect = 3e-27
 Identities = 62/97 (63%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD++ELARLGECPLDPGGYFV+KG EKVIL+QEQLS NRII D 
Sbjct: 150 GRMPIMLRSCCCVLYGKDEAELARLGECPLDPGGYFVIKGAEKVILIQEQLSKNRIIIDA 209

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                  +EKEKIY+ +NQF
Sbjct: 210 DKKGNINASVTSSSEATKSKTVIQMEKEKIYLLLNQF 246


>ref|XP_006583558.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X2 [Glycine max]
          Length = 1021

 Score =  125 bits (314), Expect = 6e-27
 Identities = 59/97 (60%), Positives = 74/97 (76%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVL+G+D++ELA+LGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 157 GRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 216

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+EKEK+++Q+N+F
Sbjct: 217 DKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKF 253


>ref|XP_006583557.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X1 [Glycine max]
          Length = 1165

 Score =  125 bits (314), Expect = 6e-27
 Identities = 59/97 (60%), Positives = 74/97 (76%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVL+G+D++ELA+LGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 157 GRMPIMLRSCCCVLHGRDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 216

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+EKEK+++Q+N+F
Sbjct: 217 DKKGNITASVTSSTEKIKTKTVVVMEKEKLWLQLNKF 253


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           isoform X1 [Solanum tuberosum]
           gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC2-like isoform X2 [Solanum
           tuberosum]
          Length = 1153

 Score =  125 bits (314), Expect = 6e-27
 Identities = 60/98 (61%), Positives = 72/98 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD+ ELARLGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 144 GRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 203

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQFQ 296
           DKKG++                  +EKEK+Y+++N F+
Sbjct: 204 DKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFK 241


>ref|XP_002321356.2| hypothetical protein POPTR_0015s005302g, partial [Populus
           trichocarpa] gi|550321670|gb|EEF05483.2| hypothetical
           protein POPTR_0015s005302g, partial [Populus
           trichocarpa]
          Length = 1034

 Score =  125 bits (314), Expect = 6e-27
 Identities = 62/97 (63%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGK+++ELARLGECPLDPGGYFVVKGTEKVIL+QEQLS NRII D 
Sbjct: 146 GRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDN 205

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 ++EKEK+Y+ +NQF
Sbjct: 206 DKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQF 242


>ref|XP_002321360.2| hypothetical protein POPTR_0015s005302g, partial [Populus
           trichocarpa] gi|550321669|gb|EEF05487.2| hypothetical
           protein POPTR_0015s005302g, partial [Populus
           trichocarpa]
          Length = 1035

 Score =  125 bits (314), Expect = 6e-27
 Identities = 62/97 (63%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGK+++ELARLGECPLDPGGYFVVKGTEKVIL+QEQLS NRII D 
Sbjct: 146 GRMPIMLRSCCCVLYGKNEAELARLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDN 205

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 ++EKEK+Y+ +NQF
Sbjct: 206 DKKGNINASVTSSTEATKSKTVILMEKEKMYLCLNQF 242


>ref|XP_004249732.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Solanum lycopersicum]
          Length = 1183

 Score =  125 bits (314), Expect = 6e-27
 Identities = 60/98 (61%), Positives = 72/98 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYGKD+ ELARLGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 174 GRMPIMLRSSCCVLYGKDEDELARLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 233

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQFQ 296
           DKKG++                  +EKEK+Y+++N F+
Sbjct: 234 DKKGSVQASVTSSTEKTKSKTIIKMEKEKVYLELNMFK 271


>ref|XP_006572933.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X4 [Glycine max]
          Length = 1036

 Score =  125 bits (313), Expect = 8e-27
 Identities = 59/97 (60%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVL+GKD++ELA+LGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 28  GRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 87

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+E EK+++Q+N+F
Sbjct: 88  DKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKF 124


>ref|XP_006572932.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X3 [Glycine max]
          Length = 1085

 Score =  125 bits (313), Expect = 8e-27
 Identities = 59/97 (60%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVL+GKD++ELA+LGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 158 GRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 217

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+E EK+++Q+N+F
Sbjct: 218 DKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKF 254


>gb|ESW24958.1| hypothetical protein PHAVU_004G175000g [Phaseolus vulgaris]
          Length = 1161

 Score =  125 bits (313), Expect = 8e-27
 Identities = 60/97 (61%), Positives = 71/97 (73%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVLYG+D +ELA+LGECPLDPGGYFVVKGTEKVIL+QEQLS NRII D 
Sbjct: 153 GRMPIMLRSCCCVLYGRDQAELAKLGECPLDPGGYFVVKGTEKVILIQEQLSKNRIIIDT 212

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+E EK+++ +NQF
Sbjct: 213 DKKGNIAASVTSSTEKIKTKTIIVMENEKLWLHLNQF 249


>ref|XP_003516394.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc2-like
           isoform X1 [Glycine max]
          Length = 1166

 Score =  125 bits (313), Expect = 8e-27
 Identities = 59/97 (60%), Positives = 73/97 (75%)
 Frame = +3

Query: 3   GSMPVMLRS*SCVLYGKDDSELARLGECPLDPGGYFVVKGTEKVILMQEQLSNNRIITDV 182
           G MP+MLRS  CVL+GKD++ELA+LGECPLDPGGYFV+KGTEKVIL+QEQLS NRII D 
Sbjct: 158 GRMPIMLRSCCCVLHGKDEAELAKLGECPLDPGGYFVIKGTEKVILIQEQLSKNRIIIDT 217

Query: 183 DKKGNLIXXXXXXXXXXXXXXXFVLEKEKIYVQINQF 293
           DKKGN+                 V+E EK+++Q+N+F
Sbjct: 218 DKKGNITASVTSSTEKIKTKTVIVMENEKLWLQLNKF 254


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