BLASTX nr result
ID: Rheum21_contig00032888
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00032888
(374 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subc... 89 5e-16
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 88 1e-15
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 87 3e-15
emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group] 87 3e-15
gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subc... 86 7e-15
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 85 9e-15
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 85 1e-14
emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis] 85 1e-14
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 85 1e-14
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 84 1e-14
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 84 1e-14
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 84 1e-14
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 84 1e-14
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 84 2e-14
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 83 3e-14
emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group] 83 3e-14
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 82 6e-14
emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera] 82 6e-14
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 82 6e-14
gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group... 82 6e-14
>gb|ABA91380.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1138
Score = 89.4 bits (220), Expect = 5e-16
Identities = 42/109 (38%), Positives = 66/109 (60%)
Frame = +3
Query: 30 PTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQG 209
P+T AS + + +A+D+ +R+TR P + ++ A+A SVAE+I+
Sbjct: 591 PSTNVPIESQEKASVQQSPKHSIAKDKPKRNTRPPQRYIE-EANIVAYALSVAEEIEGNA 649
Query: 210 EPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +AI + ++W+ AM +EMDSL KN TW+LVKLPK K+ I C+
Sbjct: 650 EPSTYSEAIVSDDCNRWITAMHDEMDSLEKNHTWKLVKLPKEKKLIHCK 698
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 87.8 bits (216), Expect = 1e-15
Identities = 45/114 (39%), Positives = 71/114 (62%)
Frame = +3
Query: 15 DENSDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAED 194
+E+ +P T + E S PS+ +A+DR RR +P + D+ +A VAE+
Sbjct: 731 EEDQEPQTETDIPE----SMPSDIHQSIAQDRPRRVGVRPPTRYGFE-DMVGYALQVAEE 785
Query: 195 IDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
+D+ EP +K+AI +S+KW AAM +EM+SLHKN+TW+LV P G++ I+C+
Sbjct: 786 VDTS-EPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCK 838
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 86.7 bits (213), Expect = 3e-15
Identities = 44/111 (39%), Positives = 68/111 (61%)
Frame = +3
Query: 24 SDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDS 203
+D T +H+ P + QP +E +A R +RS P L + CD+ +AFS AE +++
Sbjct: 748 NDVNDTVQHSPPVL--QPQDE--PIAHRRTKRSCGAPVRLIE-ECDMVYYAFSCAEQVEN 802
Query: 204 QGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +A+ + +KW++AM+EEM SL KN TWELV LPK K+ + C+
Sbjct: 803 TLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCK 853
>emb|CAI44659.1| OSJNBa0061C06.9 [Oryza sativa Japonica Group]
Length = 1007
Score = 86.7 bits (213), Expect = 3e-15
Identities = 38/87 (43%), Positives = 59/87 (67%)
Frame = +3
Query: 96 LARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQGEPHNFKQAISGPESDKWLAAMK 275
+A+D+ +R+T+ P + ++ A+A SVAEDI+ EP + +AI + ++W+ AM
Sbjct: 560 IAKDKPKRNTKPPQRYIE-EANIVAYALSVAEDIEGNAEPSTYSEAIVSDDCNRWITAMH 618
Query: 276 EEMDSLHKNETWELVKLPKGKRSISCR 356
+EM+SL KN TWELVKLPK K+ I C+
Sbjct: 619 DEMESLEKNHTWELVKLPKEKKPIRCK 645
>gb|ABA96191.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1156
Score = 85.5 bits (210), Expect = 7e-15
Identities = 43/111 (38%), Positives = 67/111 (60%)
Frame = +3
Query: 24 SDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDS 203
+D T +H+ P + QP +E +A R +RS P + CD+ +AFS AE +++
Sbjct: 688 NDVNVTVQHSPPVL--QPQDE--PIAHRRTKRSCGAPIRFIE-ECDMVYYAFSCAEQVEN 742
Query: 204 QGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +A+ + +KW++AM+EEM SL KN TWELV LPK K+ + C+
Sbjct: 743 TLEPATYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVHCK 793
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 85.1 bits (209), Expect = 9e-15
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Frame = +3
Query: 12 NDENSDPTTTAEHAEPAVASQPS----NEGYQLARDRERRSTRKPSNLSDYNCDLAAFAF 179
+D N+D H + V P E +A+ + +R+T+ P L + C+L+ +A
Sbjct: 751 DDHNNDVADDDAHDD--VQQTPPILQLEEDLSIAQRKSKRTTKPPKRLIE-ECNLSYYAL 807
Query: 180 SVAEDIDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
S AE +++ EP +K+A+ +S+ W++AM EEM SL KN TWE+V LPK K++ISC+
Sbjct: 808 SCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 866
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 84.7 bits (208), Expect = 1e-14
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Frame = +3
Query: 9 SNDENSDPTTTA---EHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAF 179
SN E + T +A + E + E Y LARDR RR R P + + L FA
Sbjct: 753 SNQEQASTTRSASKDKQVEETDSDDDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFAL 812
Query: 180 SVAEDIDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
++ ED + EP +++A+ PE +KW A EEMDS+ KN+TW+++ P+GKR I C+
Sbjct: 813 TMTEDGEVY-EPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCK 870
>emb|CAJ09951.2| putative gag-pol polyprotein [Citrus sinensis]
Length = 1334
Score = 84.7 bits (208), Expect = 1e-14
Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 2/114 (1%)
Frame = +3
Query: 21 NSDPTTTAEHAEPAVASQPSNE--GYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAED 194
+ D TAE E V+ P + YQLARDR RR R P DL A+A A++
Sbjct: 751 SDDERATAESEEHEVSELPQADLQNYQLARDRVRREVRAPVRYG--YADLIAYALLCADE 808
Query: 195 IDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
+ + EP NF +A+ DKWL AM++EM+SL +N+TW L+ P KR I+C+
Sbjct: 809 VTIE-EPANFSEAMESVHCDKWLEAMQDEMESLQRNQTWTLIPNPGNKRLINCK 861
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 84.7 bits (208), Expect = 1e-14
Identities = 37/87 (42%), Positives = 59/87 (67%)
Frame = +3
Query: 96 LARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQGEPHNFKQAISGPESDKWLAAMK 275
+A+++ +RST+ P + ++ A+A SVAE+I+ EP + +AI + ++W+ AM
Sbjct: 164 IAKEKPKRSTKPPQRYIE-EANIVAYALSVAEEIEGNAEPSTYSEAIVSDDCNRWITAMH 222
Query: 276 EEMDSLHKNETWELVKLPKGKRSISCR 356
+EM+SL KN TWELVKLPK K+ I C+
Sbjct: 223 DEMESLEKNHTWELVKLPKEKKPIRCK 249
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 84.3 bits (207), Expect = 1e-14
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Frame = +3
Query: 12 NDENSDPTTTAEHAEPAVASQPS----NEGYQLARDRERRSTRKPSNLSDYNCDLAAFAF 179
+D N+D H + V P E +A+ + +R+T+ P L + C+L+ +A
Sbjct: 749 DDHNNDVADDDAHDD--VQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE-ECNLSYYAL 805
Query: 180 SVAEDIDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
S AE +++ EP +K+A+ +S+ W++AM EEM SL KN TWE+V LPK K++ISC+
Sbjct: 806 SCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 84.3 bits (207), Expect = 1e-14
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Frame = +3
Query: 12 NDENSDPTTTAEHAEPAVASQPS----NEGYQLARDRERRSTRKPSNLSDYNCDLAAFAF 179
+D N+D H + V P E +A+ + +R+T+ P L + C+L+ +A
Sbjct: 749 DDHNNDVADDDAHDD--VQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE-ECNLSYYAL 805
Query: 180 SVAEDIDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
S AE +++ EP +K+A+ +S+ W++AM EEM SL KN TWE+V LPK K++ISC+
Sbjct: 806 SCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 84.3 bits (207), Expect = 1e-14
Identities = 41/112 (36%), Positives = 63/112 (56%)
Frame = +3
Query: 21 NSDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDID 200
N D + V P +A+DR +R+ + P + ++ A+A SVAE+I+
Sbjct: 963 NQDEPVIEDSNSSIVQQSPKRS---IAKDRPKRNIKPPQRYIE-EANIVAYALSVAEEIE 1018
Query: 201 SQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +AI + ++W+ AM +EM+SL KN TWELVKLPK K+ I C+
Sbjct: 1019 GNAEPSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 1070
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 84.3 bits (207), Expect = 1e-14
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 4/119 (3%)
Frame = +3
Query: 12 NDENSDPTTTAEHAEPAVASQPS----NEGYQLARDRERRSTRKPSNLSDYNCDLAAFAF 179
+D N+D H + V P E +A+ + +R+T+ P L + C+L+ +A
Sbjct: 749 DDHNNDVADDDAHDD--VQQTPPILQLEEELPIAQRKSKRTTKPPKRLIE-ECNLSYYAL 805
Query: 180 SVAEDIDSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
S AE +++ EP +K+A+ +S+ W++AM EEM SL KN TWE+V LPK K++ISC+
Sbjct: 806 SCAEQVENVHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 84.0 bits (206), Expect = 2e-14
Identities = 41/112 (36%), Positives = 64/112 (57%)
Frame = +3
Query: 21 NSDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDID 200
N D + + AV P +A+D+ +R+ + P + ++ A+A SVAE+I+
Sbjct: 635 NQDASVIEDSDSSAVQQSPKRS---IAKDKPKRNIKPPRRYIE-EANIVAYALSVAEEIE 690
Query: 201 SQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +AI ++W+ AM +EM+SL KN TWELVKLPK K+ I C+
Sbjct: 691 GNAEPSTYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 742
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 83.2 bits (204), Expect = 3e-14
Identities = 43/113 (38%), Positives = 68/113 (60%), Gaps = 6/113 (5%)
Frame = +3
Query: 36 TTAEHAEPAVASQPSNE------GYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDI 197
T+++ A+ + + NE Y L RDR++R + P ++ AFA SVAE+I
Sbjct: 709 TSSKTAQEEIVHERQNEPTQGLESYNLVRDRQKRQVKPPKRYGQ--AEMTAFALSVAEEI 766
Query: 198 DSQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP +++AI+ E+D+W+ A++EEMDSL KNETWELV PK ++ + +
Sbjct: 767 VDM-EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSK 818
>emb|CAH65740.1| OSIGBa0127D24.3 [Oryza sativa Indica Group]
Length = 1009
Score = 83.2 bits (204), Expect = 3e-14
Identities = 41/112 (36%), Positives = 62/112 (55%)
Frame = +3
Query: 21 NSDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDID 200
N D + V P +A+DR +R+T+ P + ++ +A SVAE+I+
Sbjct: 577 NQDAPVIEDSDSSIVQQSPKRS---IAKDRPKRNTKPPRKYIE-EANIVTYALSVAEEIE 632
Query: 201 SQGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + AI + ++W+ AM +EM+SL KN TWELVKLPK K+ I C+
Sbjct: 633 GNTEPSTYSDAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCK 684
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 82.4 bits (202), Expect = 6e-14
Identities = 38/104 (36%), Positives = 64/104 (61%)
Frame = +3
Query: 45 EHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQGEPHNF 224
E ++ ++ Q S +A+D+ +R+ + P + ++ A+A SVAE+I+ EP +
Sbjct: 798 EDSDSSIVQQSSKRS--IAKDKPKRNIKPPRRYIE-EANIVAYALSVAEEIEGNAEPSTY 854
Query: 225 KQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
+AI + ++W+ AM +EM+SL KN TWE VKLPK K+ I C+
Sbjct: 855 SEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCK 898
>emb|CAN80304.1| hypothetical protein VITISV_017821 [Vitis vinifera]
Length = 939
Score = 82.4 bits (202), Expect = 6e-14
Identities = 43/91 (47%), Positives = 59/91 (64%)
Frame = +3
Query: 84 EGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQGEPHNFKQAISGPESDKWL 263
E YQL RD RRS R P YN D+ A++ S+ E++ S EP N+ +AIS +S KW+
Sbjct: 418 ENYQLTRDGARRSIRPPQRFG-YN-DMVAYSLSIGEEL-SCAEPKNYLEAISCKDSPKWM 474
Query: 264 AAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
AM+EE +SL KN TW+LV PKG + + C+
Sbjct: 475 TAMQEEFESLLKNGTWQLVDKPKGCKVVGCK 505
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 82.4 bits (202), Expect = 6e-14
Identities = 38/104 (36%), Positives = 64/104 (61%)
Frame = +3
Query: 45 EHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDSQGEPHNF 224
E ++ ++ Q S +A+D+ +R+ + P + ++ A+A SVAE+I+ EP +
Sbjct: 798 EDSDSSIVQQSSKRS--IAKDKPKRNIKPPRRYIE-EANIVAYALSVAEEIEGNAEPSTY 854
Query: 225 KQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
+AI + ++W+ AM +EM+SL KN TWE VKLPK K+ I C+
Sbjct: 855 SEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCK 898
>gb|AAR87163.1| putative polyprotein [Oryza sativa Japonica Group]
gi|53370655|gb|AAU89150.1| integrase core domain
containing protein [Oryza sativa Japonica Group]
gi|108710286|gb|ABF98081.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1322
Score = 82.4 bits (202), Expect = 6e-14
Identities = 44/111 (39%), Positives = 69/111 (62%)
Frame = +3
Query: 24 SDPTTTAEHAEPAVASQPSNEGYQLARDRERRSTRKPSNLSDYNCDLAAFAFSVAEDIDS 203
+D T +H+ P+V QP +E +A R +RS P L + CD+ +AFS AE +++
Sbjct: 748 NDVNDTVQHS-PSVL-QPQDE--PIAHRRTKRSCGAPVRLIE-ECDMVYYAFSYAEQVEN 802
Query: 204 QGEPHNFKQAISGPESDKWLAAMKEEMDSLHKNETWELVKLPKGKRSISCR 356
EP + +A+ + +KW++A++EEM SL KN TWELV LPK K+ + C+
Sbjct: 803 TLEPATYTEAVVSGDREKWISAIQEEMQSLEKNGTWELVHLPKQKKPVRCK 853