BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00032547
         (257 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABO16618.1| gag protein [Feline immunodeficiency virus]             58   1e-06
gb|AFM44418.1| gag protein [Human immunodeficiency virus 1]            57   2e-06
emb|CAT00606.1| gag/pol precursor [HIV-1 M_02CD.MBTB047]               57   3e-06
gb|AFR66840.1| gag protein [Human immunodeficiency virus 1]            56   4e-06
gb|AFR66818.1| gag protein [Human immunodeficiency virus 1]            56   4e-06
gb|AHC98492.1| gag protein [Human immunodeficiency virus 2]            56   6e-06
gb|AFV39259.1| gag protein [Human immunodeficiency virus]              55   7e-06
gb|AFN81327.1| gag protein [Human immunodeficiency virus 1]            55   7e-06
gb|ADJ58155.1| gag protein [Human immunodeficiency virus 1]            55   7e-06
gb|ACU50595.1| gag protein [Human immunodeficiency virus 1]            55   9e-06
gb|AAT68802.1| gag protein [Simian immunodeficiency virus]             55   9e-06

>gb|ABO16618.1| gag protein [Feline immunodeficiency virus]
          Length = 502

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 33/74 (44%), Positives = 44/74 (59%)
 Frame = +3

Query: 12  VLQSRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKERKACFGCGKIGHMQKF 191
           V+Q+  + + +Q G+ +R GQ   L +CFNCG  GH SR C+  RK C  CGK GH+   
Sbjct: 394 VMQANVRPKGSQQGN-RRPGQ---LFKCFNCGKPGHMSRQCRAPRK-CNNCGKTGHISTD 448

Query: 192 CWLERQKGLESQQG 233
           CW  + KG   QQG
Sbjct: 449 CW--QMKG--KQQG 458


>gb|AFM44418.1| gag protein [Human immunodeficiency virus 1]
          Length = 507

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
 Frame = +3

Query: 18  QSRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKFC 194
           Q+ + + M Q G+ +  G+   +++CFNCG AGH +R C+  R K C+ CGK GH  K C
Sbjct: 369 QANSASIMMQKGNFKNQGK---IVKCFNCGKAGHIARNCRAPRKKGCWKCGKEGHQMKDC 425

Query: 195 WLERQ 209
             ERQ
Sbjct: 426 SNERQ 430


>emb|CAT00606.1| gag/pol precursor [HIV-1 M_02CD.MBTB047]
          Length = 1430

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
 Frame = +3

Query: 39  MTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKFCWLERQKG 215
           + QGG+ +  GQ   +I+CFNCG  GH +R C+  R K C+ CG+ GH  K C  ERQ  
Sbjct: 373 LVQGGNFK--GQRGKIIKCFNCGKEGHLARNCKAPRKKGCWKCGREGHQMKDC-TERQAN 429

Query: 216 -----LESQQGFANQ 245
                L SQQG A +
Sbjct: 430 FFREILASQQGEARE 444


>gb|AFR66840.1| gag protein [Human immunodeficiency virus 1]
          Length = 506

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 12  VLQSRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQK 188
           V  S A   M Q G+ +     + +I+CFNCG  GH +R C+  R K C+ CGK GH  K
Sbjct: 373 VTNSAATAXMMQRGNFRNQ---RKIIKCFNCGKEGHLARNCRAPRXKGCWKCGKEGHQMK 429

Query: 189 FCWLERQ 209
            C  ERQ
Sbjct: 430 DCSTERQ 436


>gb|AFR66818.1| gag protein [Human immunodeficiency virus 1]
          Length = 506

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/67 (43%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
 Frame = +3

Query: 12  VLQSRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQK 188
           V  S A   M Q G+ +     + +I+CFNCG  GH +R C+  R K C+ CGK GH  K
Sbjct: 373 VTNSAATAMMMQRGNFRNQ---RKIIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMK 429

Query: 189 FCWLERQ 209
            C  ERQ
Sbjct: 430 DCTTERQ 436


>gb|AHC98492.1| gag protein [Human immunodeficiency virus 2]
          Length = 509

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
 Frame = +3

Query: 60  QRSGQDKSLIRCFNCGTAGHRSRMCQ-KERKACFGCGKIGHMQKFCWLERQKGLESQQGF 236
           QR+G  KS+I+C+NCG  GH +R C+   R+ C+ CGK GH+   C  ERQ G     GF
Sbjct: 385 QRTGGKKSMIKCWNCGKEGHSARQCRAPRRQGCWKCGKPGHIMAKC-PERQAGF---LGF 440

Query: 237 ANQNNRP 257
                +P
Sbjct: 441 GPWGKKP 447


>gb|AFV39259.1| gag protein [Human immunodeficiency virus]
          Length = 501

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39  MTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKFCWLERQ 209
           M Q G+    GQ +  I+CFNCG  GH +R C+  R K C+ CGK GH  K C  ERQ
Sbjct: 376 MMQRGNFNFKGQKR--IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTTERQ 431


>gb|AFN81327.1| gag protein [Human immunodeficiency virus 1]
          Length = 499

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 28/66 (42%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
 Frame = +3

Query: 21  SRAKTEMTQGGSTQRSGQDKSL--IRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKF 191
           + A +++ Q G   + G  K    I+CFNCG  GH +R C+  R K C+ CGK GH  K 
Sbjct: 364 AEAMSQVQQTGIMMQGGNFKGQRRIKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKD 423

Query: 192 CWLERQ 209
           C  ERQ
Sbjct: 424 CTFERQ 429


>gb|ADJ58155.1| gag protein [Human immunodeficiency virus 1]
          Length = 496

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +3

Query: 39  MTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKFCWLERQ 209
           M Q G+    GQ +  I+CFNCG  GH +R C+  R K C+ CGK GH  K C  ERQ
Sbjct: 377 MMQRGNFNFKGQKR--IKCFNCGKEGHLARNCRAPRKKGCWKCGKEGHQMKDCTTERQ 432


>gb|ACU50595.1| gag protein [Human immunodeficiency virus 1]
          Length = 489

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +3

Query: 21  SRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKER-KACFGCGKIGHMQKFCW 197
           + + T M Q G+    G  +  ++CFNCG AGH SR C+  R K C+ CGK GH  K C 
Sbjct: 371 TNSATVMMQKGNL---GNQRKFVKCFNCGKAGHISRNCRAPRKKGCWKCGKEGHQMKDC- 426

Query: 198 LERQ 209
            ERQ
Sbjct: 427 TERQ 430


>gb|AAT68802.1| gag protein [Simian immunodeficiency virus]
          Length = 532

 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 30/64 (46%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +3

Query: 6   LGVLQSRAKTEMTQGGSTQRSGQDKSLIRCFNCGTAGHRSRMCQKERKA-CFGCGKIGHM 182
           LG++Q R      QGG  +R       +RCFNCG  GH  R C+K RK  CF CGK GH+
Sbjct: 401 LGMVQQRGG----QGGGPRRQ------LRCFNCGQIGHVQRDCKKPRKVKCFKCGKEGHI 450

Query: 183 QKFC 194
            K C
Sbjct: 451 AKNC 454