BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00032238
         (436 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ACV53612.1| gag polyprotein [Caprine arthritis encephalitis v...    57   2e-06
gb|AAR22608.1| gag protein [Small ruminant lentivirus]                 56   4e-06
gb|ACA81609.1| gag polyprotein [Caprine arthritis encephalitis v...    55   1e-05
gb|AAR22594.1| gag protein [Small ruminant lentivirus]                 55   1e-05

>gb|ACV53612.1| gag polyprotein [Caprine arthritis encephalitis virus]
          Length = 442

 Score = 57.4 bits (137), Expect = 2e-06
 Identities = 31/63 (49%), Positives = 36/63 (57%)
 Frame = +3

Query: 222 CQNCGGVGHKSFACLNERKTCFGCGKKGHMQKFCRHGKQKGAESQQGSINQNNRPRISPV 401
           C NCG  GH +  C    KTC+ CGKKGHMQK CR  K K A  QQG+  +   PR+ P 
Sbjct: 382 CYNCGKPGHLARQC-RSGKTCYKCGKKGHMQKDCRQEKGK-ARQQQGNFLRG--PRVVPS 437

Query: 402 EAP 410
             P
Sbjct: 438 APP 440


>gb|AAR22608.1| gag protein [Small ruminant lentivirus]
          Length = 240

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/64 (45%), Positives = 37/64 (57%)
 Frame = +3

Query: 219 QCQNCGGVGHKSFACLNERKTCFGCGKKGHMQKFCRHGKQKGAESQQGSINQNNRPRISP 398
           +C NCG  GH++  C  +   C  CGK+GHMQ+ CR GK+ G E QQG  N    PR+ P
Sbjct: 179 RCYNCGKPGHQARQC-RQGIICHNCGKRGHMQRDCR-GKKGGREGQQG--NGRRGPRVVP 234

Query: 399 VEAP 410
              P
Sbjct: 235 SAPP 238


>gb|ACA81609.1| gag polyprotein [Caprine arthritis encephalitis virus Roccaverano]
          Length = 442

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/63 (46%), Positives = 35/63 (55%)
 Frame = +3

Query: 222 CQNCGGVGHKSFACLNERKTCFGCGKKGHMQKFCRHGKQKGAESQQGSINQNNRPRISPV 401
           C NCG  GH +  C    KTC+ CG+KGH+QK CR GK K  +  QG  N    PR+ P 
Sbjct: 382 CYNCGKPGHLARQC-RSGKTCYKCGRKGHIQKDCRQGKGK-PQWPQG--NSQRGPRVVPS 437

Query: 402 EAP 410
             P
Sbjct: 438 APP 440


>gb|AAR22594.1| gag protein [Small ruminant lentivirus]
          Length = 240

 Score = 55.1 bits (131), Expect = 1e-05
 Identities = 29/64 (45%), Positives = 36/64 (56%)
 Frame = +3

Query: 219 QCQNCGGVGHKSFACLNERKTCFGCGKKGHMQKFCRHGKQKGAESQQGSINQNNRPRISP 398
           +C NCG  GH++  C  +   C  CGKKGH+QK CR GK+   E QQG  N    PR+ P
Sbjct: 179 RCYNCGKPGHRAREC-RQGVICHNCGKKGHVQKECR-GKRNREERQQG--NGRRGPRVVP 234

Query: 399 VEAP 410
              P
Sbjct: 235 SAPP 238