BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00032173
         (329 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis...    96   5e-18
ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis t...    96   5e-18
ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutr...    94   2e-17
ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, put...    93   3e-17
gb|EMJ20786.1| hypothetical protein PRUPE_ppa023422mg, partial [...    93   4e-17
gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Mor...    92   9e-17
gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma ...    92   9e-17
gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma ...    92   9e-17
gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma ...    92   9e-17
gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma ...    92   9e-17
gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma ...    92   9e-17
gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma ...    92   9e-17
ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III s...    91   2e-16
ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III s...    91   2e-16
ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citr...    91   2e-16
ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III s...    91   2e-16
ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arab...    90   4e-16
ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Caps...    88   1e-15
ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III s...    88   1e-15
ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III s...    87   2e-15

>dbj|BAB11387.1| DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
          Length = 1194

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           ID+E L+APIKST DKFQLVPEFLKVRGLV++HLDS+NYF+  GI KIV+ N+R+TST  
Sbjct: 38  IDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVD 97

Query: 4   P 2
           P
Sbjct: 98  P 98


>ref|NP_199327.4| DNA-directed RNA polymerase RPC2 [Arabidopsis thaliana]
           gi|332007826|gb|AED95209.1| DNA-directed RNA polymerase
           RPC2 [Arabidopsis thaliana]
          Length = 1161

 Score = 95.9 bits (237), Expect = 5e-18
 Identities = 44/61 (72%), Positives = 53/61 (86%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           ID+E L+APIKST DKFQLVPEFLKVRGLV++HLDS+NYF+  GI KIV+ N+R+TST  
Sbjct: 17  IDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIHKIVKANSRITSTVD 76

Query: 4   P 2
           P
Sbjct: 77  P 77


>ref|XP_006398163.1| hypothetical protein EUTSA_v10000748mg [Eutrema salsugineum]
           gi|557099252|gb|ESQ39616.1| hypothetical protein
           EUTSA_v10000748mg [Eutrema salsugineum]
          Length = 1164

 Score = 93.6 bits (231), Expect = 2e-17
 Identities = 43/61 (70%), Positives = 53/61 (86%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +DR+ L+APIKST DKFQLVPEFLKVRGLV++HLDS+NYFV  GI+KIVR N+ +TS+  
Sbjct: 17  VDRQKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFVNVGIKKIVRANSLITSSLD 76

Query: 4   P 2
           P
Sbjct: 77  P 77


>ref|XP_002525541.1| DNA-directed RNA polymerase III subunit, putative [Ricinus
           communis] gi|223535120|gb|EEF36800.1| DNA-directed RNA
           polymerase III subunit, putative [Ricinus communis]
          Length = 1139

 Score = 93.2 bits (230), Expect = 3e-17
 Identities = 46/73 (63%), Positives = 58/73 (79%), Gaps = 2/73 (2%)
 Frame = -2

Query: 214 MGLNEHSVPN--IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKI 41
           +G NE ++    ID++ L APIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KI
Sbjct: 10  IGNNEQNLVEQLIDKQKLTAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNIGIKKI 69

Query: 40  VRVNNRVTSTFSP 2
           VR N+R+ ST  P
Sbjct: 70  VRANDRIVSTVDP 82


>gb|EMJ20786.1| hypothetical protein PRUPE_ppa023422mg, partial [Prunus persica]
          Length = 448

 Score = 92.8 bits (229), Expect = 4e-17
 Identities = 43/61 (70%), Positives = 51/61 (83%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           ID+EFLAAPIKS  DKF L+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 12  IDKEFLAAPIKSATDKFALLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 71

Query: 4   P 2
           P
Sbjct: 72  P 72


>gb|EXB83245.1| DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]
          Length = 786

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/63 (66%), Positives = 53/63 (84%)
 Frame = -2

Query: 190 PNIDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTST 11
           P ID++FLAAPIK  VDK+QL+PEFLKVRGLV++HLDS+NYFV   I+KIVR N+R+ S+
Sbjct: 65  PAIDKQFLAAPIKRAVDKYQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVRSNSRIVSS 124

Query: 10  FSP 2
             P
Sbjct: 125 VDP 127


>gb|EOY19614.1| DNA-directed RNA polymerase isoform 6 [Theobroma cacao]
          Length = 1034

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>gb|EOY19613.1| DNA-directed RNA polymerase isoform 5 [Theobroma cacao]
          Length = 1006

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>gb|EOY19612.1| DNA-directed RNA polymerase isoform 4 [Theobroma cacao]
          Length = 1034

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>gb|EOY19611.1| DNA-directed RNA polymerase isoform 3 [Theobroma cacao]
          Length = 1153

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>gb|EOY19610.1| DNA-directed RNA polymerase isoform 2 [Theobroma cacao]
          Length = 1011

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>gb|EOY19609.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
          Length = 1158

 Score = 91.7 bits (226), Expect = 9e-17
 Identities = 42/61 (68%), Positives = 52/61 (85%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           +D++ LAAPIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   
Sbjct: 24  VDKQKLAAPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGVD 83

Query: 4   P 2
           P
Sbjct: 84  P 84


>ref|XP_004308665.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Fragaria vesca subsp. vesca]
          Length = 1163

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 42/62 (67%), Positives = 51/62 (82%)
 Frame = -2

Query: 187 NIDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTF 8
           +ID+E LAAPIKS  DKF L+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S  
Sbjct: 32  DIDKELLAAPIKSAKDKFALIPEFLKVRGLVKQHLDSFNYFVNTGIKKIVRANDRIVSGV 91

Query: 7   SP 2
            P
Sbjct: 92  DP 93


>ref|XP_006494572.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           isoform X1 [Citrus sinensis]
           gi|568883651|ref|XP_006494573.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC2-like isoform X2 [Citrus
           sinensis]
          Length = 1149

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 41/60 (68%), Positives = 51/60 (85%)
 Frame = -2

Query: 181 DREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFSP 2
           D++ LAAP+KS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   P
Sbjct: 17  DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76


>ref|XP_006432385.1| hypothetical protein CICLE_v10000078mg [Citrus clementina]
           gi|557534507|gb|ESR45625.1| hypothetical protein
           CICLE_v10000078mg [Citrus clementina]
          Length = 1149

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 41/60 (68%), Positives = 51/60 (85%)
 Frame = -2

Query: 181 DREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFSP 2
           D++ LAAP+KS VDKFQL+PEFLKVRGLV++HLDS+NYFV  GI+KIVR N+R+ S   P
Sbjct: 17  DKQKLAAPVKSVVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTGIRKIVRANDRIVSGIDP 76


>ref|XP_004141655.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           [Cucumis sativus]
          Length = 1158

 Score = 90.5 bits (223), Expect = 2e-16
 Identities = 43/81 (53%), Positives = 62/81 (76%), Gaps = 1/81 (1%)
 Frame = -2

Query: 241 PETSLRSLIMGLNEHSVPN-IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYF 65
           PE + ++  +G N + + + ID++F+  PIKS VDKFQL+PEFLKVRGLV++HLDS+NYF
Sbjct: 6   PEDASKNEKLGDNSNPIDSDIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYF 65

Query: 64  VTKGIQKIVRVNNRVTSTFSP 2
           V   I+KIV+ N+R+ S+  P
Sbjct: 66  VNTEIKKIVKANDRIESSTDP 86


>ref|XP_002863522.1| hypothetical protein ARALYDRAFT_917015 [Arabidopsis lyrata subsp.
           lyrata] gi|297309357|gb|EFH39781.1| hypothetical protein
           ARALYDRAFT_917015 [Arabidopsis lyrata subsp. lyrata]
          Length = 1165

 Score = 89.7 bits (221), Expect = 4e-16
 Identities = 42/61 (68%), Positives = 50/61 (81%)
 Frame = -2

Query: 184 IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTFS 5
           ID+E L+APIKST DKFQLVPEFLKVRGLV++HLDS+NYF+  GI+KIV  N R+ S   
Sbjct: 17  IDKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYFINVGIKKIVHANCRIASVTD 76

Query: 4   P 2
           P
Sbjct: 77  P 77


>ref|XP_006279912.1| hypothetical protein CARUB_v10025768mg [Capsella rubella]
           gi|482548616|gb|EOA12810.1| hypothetical protein
           CARUB_v10025768mg [Capsella rubella]
          Length = 1160

 Score = 88.2 bits (217), Expect = 1e-15
 Identities = 44/77 (57%), Positives = 58/77 (75%), Gaps = 6/77 (7%)
 Frame = -2

Query: 214 MGLNEHSVPN------IDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKG 53
           MGL++  + +      I++E L+APIKST DKFQLVPEFLKVRGLV++HLDS+NY +  G
Sbjct: 1   MGLDQEDLDSTNDDNFINKEKLSAPIKSTADKFQLVPEFLKVRGLVKQHLDSFNYLINVG 60

Query: 52  IQKIVRVNNRVTSTFSP 2
           I+KIV+ N  +TST  P
Sbjct: 61  IKKIVKANCLITSTADP 77


>ref|XP_004155998.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like,
           partial [Cucumis sativus]
          Length = 392

 Score = 87.8 bits (216), Expect = 1e-15
 Identities = 39/62 (62%), Positives = 52/62 (83%)
 Frame = -2

Query: 187 NIDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQKIVRVNNRVTSTF 8
           +ID++F+  PIKS VDKFQL+PEFLKVRGLV++HLDS+NYFV   I+KIV+ N+R+ S+ 
Sbjct: 25  DIDKQFIGLPIKSAVDKFQLLPEFLKVRGLVKQHLDSFNYFVNTEIKKIVKANDRIESST 84

Query: 7   SP 2
            P
Sbjct: 85  DP 86


>ref|XP_006362214.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC2-like
           isoform X1 [Solanum tuberosum]
           gi|565393087|ref|XP_006362215.1| PREDICTED: DNA-directed
           RNA polymerase III subunit RPC2-like isoform X2 [Solanum
           tuberosum]
          Length = 1153

 Score = 87.0 bits (214), Expect = 2e-15
 Identities = 42/74 (56%), Positives = 53/74 (71%)
 Frame = -2

Query: 223 SLIMGLNEHSVPNIDREFLAAPIKSTVDKFQLVPEFLKVRGLVREHLDSYNYFVTKGIQK 44
           S +    E S   ID++ LA+PIK+ VDK+QLVPEFLKVRGLV++HLDS+NYFV   I+K
Sbjct: 5   STMSNTTEDSNQGIDKQHLASPIKNLVDKYQLVPEFLKVRGLVKQHLDSFNYFVRTEIKK 64

Query: 43  IVRVNNRVTSTFSP 2
           IVR N  + S   P
Sbjct: 65  IVRANQEIRSILDP 78