BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00030813
         (687 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containi...   133   5e-29
ref|XP_006444948.1| hypothetical protein CICLE_v100190672mg, par...   133   5e-29
gb|EOX95861.1| Pentatricopeptide repeat superfamily protein, put...   129   1e-27
ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containi...   126   6e-27
ref|XP_002511922.1| pentatricopeptide repeat-containing protein,...   125   9e-27
ref|XP_002320827.2| pentatricopeptide repeat-containing family p...   100   3e-19
ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containi...   100   7e-19
ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutr...    99   9e-19
gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]      98   2e-18
ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containi...    98   3e-18
ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containi...    97   4e-18
gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Came...    97   4e-18
ref|XP_006409459.1| hypothetical protein EUTSA_v10022571mg [Eutr...    97   6e-18
ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containi...    95   2e-17
ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containi...    94   4e-17
ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Caps...    91   3e-16
ref|NP_191711.1| pentatricopeptide repeat-containing protein [Ar...    91   4e-16
ref|NP_198189.1| pentatricopeptide repeat-containing protein [Ar...    90   6e-16
ref|NP_680234.1| pentatricopeptide repeat-containing protein [Ar...    90   6e-16
gb|AAM61467.1| unknown [Arabidopsis thaliana]                          90   7e-16

>ref|XP_006491189.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g28460-like [Citrus sinensis]
          Length = 757

 Score =  133 bits (335), Expect = 5e-29
 Identities = 85/204 (41%), Positives = 112/204 (54%), Gaps = 11/204 (5%)
 Frame = +2

Query: 104 HPPSLYHLHEEDDPSSP--------VSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAH 259
           H P L H   E +   P        ++Q + ++    D  W S PQ+  +L SS  +S  
Sbjct: 17  HLPLLRHFCTEHNSPLPQVSESSIIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQ 76

Query: 260 QFLRIARHFPSSGAALKFVEYLRSNL-CQFEPVYLSSVFQAAFELAIRERSSVDKLWLLV 436
            F +I R FPSS  AL F  +L+SNL  +     LS  +QA FELAIRER S + L+ L 
Sbjct: 77  LFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLY 136

Query: 437 ERSKEMGVPLSINSATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGC 610
           +  K+  +PLSINSATLLIR F   +  D ++ VYN ++  LRN HVRN L+ VL     
Sbjct: 137 KACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDH 196

Query: 611 LEDARKVLDEMLEPESEVSANHAT 682
             DA  VLDEML+ ES+   N  T
Sbjct: 197 DRDAFNVLDEMLDRESQFPVNELT 220


>ref|XP_006444948.1| hypothetical protein CICLE_v100190672mg, partial [Citrus
           clementina] gi|557547210|gb|ESR58188.1| hypothetical
           protein CICLE_v100190672mg, partial [Citrus clementina]
          Length = 260

 Score =  133 bits (335), Expect = 5e-29
 Identities = 85/204 (41%), Positives = 112/204 (54%), Gaps = 11/204 (5%)
 Frame = +2

Query: 104 HPPSLYHLHEEDDPSSP--------VSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAH 259
           H P L H   E +   P        ++Q + ++    D  W S PQ+  +L SS  +S  
Sbjct: 17  HLPLLRHFCTEHNSPLPQVSESSIIITQALDVLLQTPDNEWTSSPQIKNLLFSSTSLSPQ 76

Query: 260 QFLRIARHFPSSGAALKFVEYLRSNL-CQFEPVYLSSVFQAAFELAIRERSSVDKLWLLV 436
            F +I R FPSS  AL F  +L+SNL  +     LS  +QA FELAIRER S + L+ L 
Sbjct: 77  LFFQITRRFPSSSRALSFFNFLQSNLPTEANTSSLSYAYQAVFELAIRERMSPESLFDLY 136

Query: 437 ERSKEMGVPLSINSATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGC 610
           +  K+  +PLSINSATLLIR F   +  D ++ VYN ++  LRN HVRN L+ VL     
Sbjct: 137 KACKDQNIPLSINSATLLIRFFGKVSMYDYSLLVYNELDNNLRNTHVRNVLIDVLLRCDH 196

Query: 611 LEDARKVLDEMLEPESEVSANHAT 682
             DA  VLDEML+ ES+   N  T
Sbjct: 197 DRDAFNVLDEMLDRESQFPVNELT 220


>gb|EOX95861.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
           cacao]
          Length = 764

 Score =  129 bits (323), Expect = 1e-27
 Identities = 80/208 (38%), Positives = 110/208 (52%), Gaps = 16/208 (7%)
 Frame = +2

Query: 107 PPSLYHLHEE--------------DDPSSPVSQIVQIIKLQQDENWKSIPQLHQILCSSP 244
           PP+ Y LH                 D  S + Q VQ++     E W S   L  +L SSP
Sbjct: 22  PPTSYLLHRHLCTEPNPEPLPAPPQDEESKIIQAVQLLLETPHEEWSSSQPLQSLLFSSP 81

Query: 245 PVSAHQFLRIARHFPSSGAALKFVEYLRSNLCQFEPVYLSSVFQAAFELAIRERSSVDKL 424
           P+S    L+I R  PSS  AL F ++L+ N    +  +LS  FQA  E A RE  S  +L
Sbjct: 82  PLSPRFLLQITRRLPSSSEALNFFKHLQQNSPSQDAQFLSYPFQAVLEQAGREPDSATRL 141

Query: 425 WLLVERSKEMGVPLSINSATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLF 598
             L + SK+  +PL++N+A LLIR F     VD ++ ++N ++P L+N HVRN L+ V  
Sbjct: 142 SQLYQDSKQWEIPLTVNAAVLLIRYFGRLEMVDESLLIFNELDPTLKNTHVRNVLIDVSL 201

Query: 599 GRGCLEDARKVLDEMLEPESEVSANHAT 682
             G ++ A  VLDEML+P SEV  N  T
Sbjct: 202 RDGRVDYALNVLDEMLQPLSEVPPNDVT 229


>ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
           gi|297745328|emb|CBI40408.3| unnamed protein product
           [Vitis vinifera]
          Length = 765

 Score =  126 bits (317), Expect = 6e-27
 Identities = 83/206 (40%), Positives = 125/206 (60%), Gaps = 5/206 (2%)
 Frame = +2

Query: 80  HVASENPSHPPSLYHLHEEDDPSSPVSQIVQIIKLQQDENWKSIPQLHQIL--CSSPPVS 253
           H+++E   HPP+      ++D SS V+ +V++++   D +W    +LHQ+L   +SPP  
Sbjct: 32  HLSAEPDHHPPAP---PPQNDSSSVVNLVVELLQTT-DNDWNE-DKLHQLLFPTTSPPPP 86

Query: 254 AHQFLRIARHFPSSGAALKFVEYLRSNL-CQFEPVYLSSVFQAAFELAIRERSSVDKLWL 430
            H  L+I R   S+  ALKF  ++++N  CQ  P+ LS   +A FE A RE +S +KL  
Sbjct: 87  PHNLLQITRLLGSTAKALKFFNWVQANSPCQDSPL-LSFTLEAVFEHASREPNSHNKLLD 145

Query: 431 LVERSKEMGVPLSINSATLLIRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFGR 604
           L + SK   +PLS+N+ATLLIR F  +  VD +  VYN + P  R  H+RN L+ VLF +
Sbjct: 146 LFKTSKSHKIPLSVNAATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRK 205

Query: 605 GCLEDARKVLDEMLEPESEVSANHAT 682
           G ++DA  +LDEML+P++E   N  T
Sbjct: 206 GRVDDALHLLDEMLQPKAEFPPNSNT 231


>ref|XP_002511922.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549102|gb|EEF50591.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 346

 Score =  125 bits (315), Expect = 9e-27
 Identities = 78/184 (42%), Positives = 111/184 (60%), Gaps = 7/184 (3%)
 Frame = +2

Query: 131 EEDDPSSPVSQIVQIIK-----LQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSS 295
           EE  PS P+     IIK     LQ  ++  +  QL+ ++ S+   S     +IAR  PSS
Sbjct: 46  EESTPSPPLQNDESIIKRAVQLLQIPDHEWNTTQLNNLIFSALSPSPRLLFQIARRLPSS 105

Query: 296 GAALKFVEYLRSNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSIN 475
             ALKF++YL++N       +LSS FQA FELA RE  S   L+ L + SKE  +PL+IN
Sbjct: 106 SQALKFLKYLQNNFPTSNTQHLSSTFQAIFELASRENDSRTNLYELYKVSKEWNIPLTIN 165

Query: 476 SATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLE 649
           SATLL+R F     V+++  ++N +E  ++N HVRN ++ +L   G ++DA KVLDEML+
Sbjct: 166 SATLLLRFFGRIGLVEKSFILFNELEHCIKNTHVRNLMVDLLLRDGRVDDAFKVLDEMLQ 225

Query: 650 PESE 661
           P SE
Sbjct: 226 PGSE 229


>ref|XP_002320827.2| pentatricopeptide repeat-containing family protein, partial
           [Populus trichocarpa] gi|550323783|gb|EEE99142.2|
           pentatricopeptide repeat-containing family protein,
           partial [Populus trichocarpa]
          Length = 720

 Score =  100 bits (250), Expect = 3e-19
 Identities = 67/188 (35%), Positives = 110/188 (58%), Gaps = 9/188 (4%)
 Frame = +2

Query: 146 SSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQ---FLRIARHFPSSGAALKFV 316
           +S +++ +Q++++  +E W +  QL+Q+L +  P S+     F +I R  PSS  ALKF+
Sbjct: 3   NSIITEALQLLQIPGNE-WNTT-QLNQLLFTDSPPSSSSPRLFYQITRRLPSSSQALKFL 60

Query: 317 EYLRSNLCQFEPVY--LSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLL 490
            YL++N          LS  FQA FELA  E  S   L  L + SKE+ +PL++N+A+ L
Sbjct: 61  NYLQNNSPSSPDTQSLLSYTFQAIFELAFCEPDSNANLSRLYKTSKELNIPLTVNAASFL 120

Query: 491 IRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLE--PES 658
           +R    S  V+ ++ ++N ++P ++N ++RN  L +L   G ++DA KV+DEM E   +S
Sbjct: 121 LRASGRSELVEESLILFNDLDPSVKNTYLRNVWLSILLRSGRVKDALKVIDEMFESNDDS 180

Query: 659 EVSANHAT 682
               N AT
Sbjct: 181 NCRPNDAT 188


>ref|XP_004301483.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 771

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 69/207 (33%), Positives = 109/207 (52%), Gaps = 6/207 (2%)
 Frame = +2

Query: 80  HVASENPSHPPSLYHLHEEDDPSSPVSQIVQIIKLQQDENWKSIPQLHQILC--SSPPVS 253
           H    NP   P  +H  ++D   S V+Q++Q+  LQ +E   + PQL  +L   S+   S
Sbjct: 27  HHLCTNPISNP--HHDDDDDYDDSLVTQVLQL--LQPNEQHWNFPQLQTLLFPNSTSSPS 82

Query: 254 AHQFLRIARHFPSSGAALKFVEYLRSNLCQFEP--VYLSSVFQAAFELAIRERSSVDKLW 427
               L I R   S   ALKF +++  NL   +P    LSS FQA  EL +R+  S   L+
Sbjct: 83  PRSLLHITRRLASPNKALKFFDFVSQNLTPQDPPKALLSSSFQALVELTLRQPPSETNLY 142

Query: 428 LLVERSKEMGVPLSINSATLLIRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFG 601
            L + +K+  VP+S  +A LL++    +   + A+ V+N +E  L+  H+RN ++ +   
Sbjct: 143 ELYKMAKDRNVPISPKAAGLLVQSMGRAGMEEEALIVFNELESGLKTTHIRNVVIGMSLK 202

Query: 602 RGCLEDARKVLDEMLEPESEVSANHAT 682
            G ++ A KVLDEML+PE+    +  T
Sbjct: 203 MGRVDGALKVLDEMLDPEANFQVDEYT 229


>ref|XP_006397795.1| hypothetical protein EUTSA_v10001319mg [Eutrema salsugineum]
           gi|557098868|gb|ESQ39248.1| hypothetical protein
           EUTSA_v10001319mg [Eutrema salsugineum]
          Length = 776

 Score = 99.4 bits (246), Expect = 9e-19
 Identities = 67/186 (36%), Positives = 99/186 (53%), Gaps = 4/186 (2%)
 Frame = +2

Query: 137 DDPSSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFV 316
           D   S   + ++ ++     +W S   L  +L SS   S   F +I R   S   A+ F+
Sbjct: 40  DCEESVAREFLEHLRDIPQHDWVSCELLDSLLLSSSS-SPRVFSQITRRLDSYSLAVSFL 98

Query: 317 EYL--RSNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLL 490
           +YL  +S   +     L+  FQ+  E A +E  S DKL  L E SKE  VPL+ N+A LL
Sbjct: 99  DYLNEKSESLKHRDESLAVAFQSVIEYACKEPDSRDKLLKLYETSKEKKVPLTFNAAKLL 158

Query: 491 IRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEV 664
           IR F     +++++ VY  ++P ++N HVRN  + +L   G ++DA KVLDEMLE ES  
Sbjct: 159 IRWFGRLGMLNQSVLVYEELDPDVKNTHVRNVFIDLLLQGGLVDDALKVLDEMLEKESIF 218

Query: 665 SANHAT 682
             N +T
Sbjct: 219 PPNEST 224


>gb|EXB51620.1| hypothetical protein L484_012912 [Morus notabilis]
          Length = 769

 Score = 98.2 bits (243), Expect = 2e-18
 Identities = 79/214 (36%), Positives = 111/214 (51%), Gaps = 11/214 (5%)
 Frame = +2

Query: 74  FLHVASE--NPSHPPS-LYHLHEEDDPSSP----VSQIVQIIKLQQDENWKSIPQLHQIL 232
           FLH+     +P   PS L HL  E  P       +S  +Q+++  + E W +  QL  +L
Sbjct: 14  FLHLLQLKLHPRPTPSILRHLSVESYPPKDDETFISHALQLLQPPETE-WNA-EQLQTLL 71

Query: 233 CS-SPPVSAHQFLRIARHFPSSGAALKFVEYLRSNL-CQFEPVYLSSVFQAAFELAIRER 406
            S S   S  + L IAR   SS  AL F +++R N     +   L+S FQA  ELA RE 
Sbjct: 72  FSDSESPSPTRLLHIARRLDSSSKALNFFDHVRENSHLPKDSSLLASTFQAVLELASREP 131

Query: 407 SSVDKLWLLVERSKEMGVPLSINSATLLIRRFDASVDRA--MSVYNAVEPRLRNVHVRNS 580
           S   +L+ L   S+E  VPL+IN+ATLL   F  +  R   M+V   ++   +N H  N 
Sbjct: 132 SWEKRLFELYTTSRERNVPLTINAATLLFVCFGRAGMREELMTVLKGLDDDCKNTHALNR 191

Query: 581 LLRVLFGRGCLEDARKVLDEMLEPESEVSANHAT 682
           ++ VL   GC++DA  VLDEMLEP+ +   N  T
Sbjct: 192 VIDVLLRLGCVDDALHVLDEMLEPDGKFPPNEVT 225


>ref|XP_004300812.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Fragaria vesca subsp. vesca]
          Length = 763

 Score = 97.8 bits (242), Expect = 3e-18
 Identities = 63/189 (33%), Positives = 105/189 (55%), Gaps = 7/189 (3%)
 Frame = +2

Query: 137 DDPSSPVSQIVQIIK-LQQDENWKSIPQLHQIL--CSSPPVSAHQFLRIARHFPSSGAAL 307
           +D  S ++Q++Q+++ LQ +E   + PQLH +L   S+   S    L I R   S   AL
Sbjct: 38  NDEDSIITQVLQVLQVLQPNEQHWNFPQLHTLLFPSSTSSPSPRTLLHITRCLASPTKAL 97

Query: 308 KFVEYLRSNLCQFEP--VYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSA 481
           KF +++  NL   +P    LSS F+A  EL +R+  S   L+ L + +K+  VP+S  + 
Sbjct: 98  KFFDFVSQNLTPQDPPKAVLSSSFEALVELTLRQPPSETNLYELYKMAKDRNVPISPKAV 157

Query: 482 TLLIR--RFDASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPE 655
            LL++  R     + A+ V+N ++  L+   +RN  + +L   G ++DA KVLDEML+PE
Sbjct: 158 RLLVQSMRRAGMEEEALLVFNELDSALKTTFIRNEAIGLLLKMGRVDDALKVLDEMLDPE 217

Query: 656 SEVSANHAT 682
           ++   +  T
Sbjct: 218 AKFQVDDFT 226


>ref|XP_006339632.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum tuberosum]
          Length = 761

 Score = 97.4 bits (241), Expect = 4e-18
 Identities = 70/185 (37%), Positives = 102/185 (55%), Gaps = 6/185 (3%)
 Frame = +2

Query: 146 SSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFVEYL 325
           S  V +IV ++K     +W S  QL + L + P  S    L+I R   S+  AL F E+ 
Sbjct: 45  SFAVPEIVSLLKTNDHNDWISNSQLVEFLHTPP--SPTSLLKITRQLGSTEKALHFFEFF 102

Query: 326 R--SNLCQFEPVYLSSVFQAAFELAIRERSS--VDKLWLLVERSKEMGVPLSINSATLLI 493
           +  S+     P  LS  FQA  E A+ E  S    KL+ L   +K+  +PLSIN+ATLL+
Sbjct: 103 KTHSSSSSSNPSSLSFTFQAILEQAMHEEKSDVPGKLFQLFSFAKDRKIPLSINAATLLM 162

Query: 494 RRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEVS 667
           R F  +  ++ ++SVYN ++   RN +V N LL  LF    ++D  KVLDEML+ ES+  
Sbjct: 163 RCFGRAKMLEESISVYNELDSDSRNTNVVNLLLDCLFRGVNIDDGFKVLDEMLKRESDFP 222

Query: 668 ANHAT 682
            N++T
Sbjct: 223 PNNST 227


>gb|AGZ20103.1| pentatricopeptide repeat-containing protein [Camellia sinensis]
          Length = 771

 Score = 97.4 bits (241), Expect = 4e-18
 Identities = 71/210 (33%), Positives = 115/210 (54%), Gaps = 9/210 (4%)
 Frame = +2

Query: 80  HVASENPSHPPSLYHLHEEDDPSSPVS----QIVQIIKLQQDENWKSIPQLHQILCSSPP 247
           H++S     PP       E  P  P S    QI+ +++  + +   +  +L Q+L SS  
Sbjct: 33  HLSSSATDPPPP------EPPPPLPNSILTTQILNLLQTHEIDWNNNNDELRQLLFSSTD 86

Query: 248 VSAHQF--LRIARHFPSSGAALKFVEYLRSNL-CQFEPVYLSSVFQAAFELAIRERSSVD 418
            S H F   +I R   ++  AL F E+ R+      +P  LSS FQA FELA ++ +   
Sbjct: 87  -SPHSFSLYKITRSLGTATKALNFFEFFRTQSPSPPDPSSLSSSFQAIFELASQQPNPPT 145

Query: 419 KLWLLVERSKEMGVPLSINSATLLIRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRV 592
           KL  L+  SK+  +PL+ +SATLLIR F  +  V++++ ++  ++P L+N H+ N ++ +
Sbjct: 146 KLSELLTISKDHNIPLNFSSATLLIRCFARAGLVEKSVLIFKELDPDLKNTHISNLIVDI 205

Query: 593 LFGRGCLEDARKVLDEMLEPESEVSANHAT 682
           L   G ++DA +V DEML+P+SE   N  T
Sbjct: 206 LLRAGRVDDAFQVFDEMLKPDSESPPNEIT 235


>ref|XP_006409459.1| hypothetical protein EUTSA_v10022571mg [Eutrema salsugineum]
           gi|557110621|gb|ESQ50912.1| hypothetical protein
           EUTSA_v10022571mg [Eutrema salsugineum]
          Length = 766

 Score = 96.7 bits (239), Expect = 6e-18
 Identities = 74/208 (35%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
 Frame = +2

Query: 74  FLHVASENPSHPPSLYHLHEEDDPSSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVS 253
           FL   S +   PP +     E   S  V  +  + K+ Q + W S   L  +L SS  VS
Sbjct: 22  FLRRFSADVYPPPGI---KSESQKSVEVQFLDNLQKIPQHD-WVSSESLSSLLASSSSVS 77

Query: 254 AHQFLRIARHFPSSGAALKFVEYL--RSNLCQFEPVYLSSVFQAAFELAIRERSSVDKLW 427
              F +I R   S   A+ F EYL  +S   +     LS VFQ+  E A  E  S DKL 
Sbjct: 78  PLVFSQITRRLGSYSLAVSFFEYLDAKSQSLERREDALSLVFQSVIEFAGSEPDSRDKLL 137

Query: 428 LLVERSKEMGVPLSINSATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFG 601
            L E +KE  +PL++ +  LLIR F      ++++ VY  ++  ++N  VRN ++ VL  
Sbjct: 138 RLYEIAKEKNIPLTVVATKLLIRWFGRMGMANQSILVYEQLDSNMQNTQVRNVVIDVLLK 197

Query: 602 RGCLEDARKVLDEMLEPESEVSANHATA 685
            G  +DA KVLDEML  ES    N  TA
Sbjct: 198 NGLADDAFKVLDEMLRKESVFPPNRITA 225


>ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Glycine max]
          Length = 746

 Score = 95.1 bits (235), Expect = 2e-17
 Identities = 64/186 (34%), Positives = 107/186 (57%), Gaps = 4/186 (2%)
 Frame = +2

Query: 122 HLHEEDDPSSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGA 301
           H + ++D +S V+Q+V++++L  D +W    +LH IL +  P+S+H FL+I     S   
Sbjct: 25  HCNSQNDAASAVTQVVELLQLPPD-HWDH-DKLHSILFNPSPLSSHHFLQITLQLSSIPK 82

Query: 302 ALKFVEYLRSNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLL--VERSKEMGVPLSIN 475
           +L+F++YL +   Q  P  LSSVFQ + ELA R  +S   L  L    +S    +PL+  
Sbjct: 83  SLQFLKYLSAKAPQHHPHSLSSVFQGSLELASRHPNSQTHLLSLHRFRKSTHPTLPLTPK 142

Query: 476 SATLLIRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLE 649
           SA+LL++  + +  V+ ++ ++N ++P  ++  + + LLRVL   G   DA  VLDEM +
Sbjct: 143 SASLLLQCLENARLVNDSLLLFNQLDPSSKSPQLCHGLLRVLLKSGRAGDALHVLDEMPQ 202

Query: 650 PESEVS 667
             S  S
Sbjct: 203 ANSGFS 208


>ref|XP_004231193.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Solanum lycopersicum]
          Length = 761

 Score = 94.0 bits (232), Expect = 4e-17
 Identities = 68/190 (35%), Positives = 105/190 (55%), Gaps = 10/190 (5%)
 Frame = +2

Query: 143 PSSPVS----QIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALK 310
           P  P+S    +IV ++K     +W S  +L + L + P  S    L+I R   S+  AL+
Sbjct: 40  PQPPISFAVPEIVSLLKTTDHNDWISNSELVEYLHTPP--SPTSLLKITRQLGSTEKALQ 97

Query: 311 FVEYLR--SNLCQFEPVYLSSVFQAAFELAIRERSS--VDKLWLLVERSKEMGVPLSINS 478
           F E+ +  S+     P  LS  FQA  E A+RE  S    KL+ L   +K+  +PLSIN+
Sbjct: 98  FFEFFKTHSSSSSSNPSSLSFTFQAILEQAMREEKSDVPRKLFQLFSFAKDRKIPLSINA 157

Query: 479 ATLLIRRFDAS--VDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEP 652
            TLL+R F  +  ++ ++SVY+ ++   RN +V N LL  LF    ++D  KVLDEML+ 
Sbjct: 158 GTLLMRCFGRAKMLEESISVYHELDSDSRNTNVVNLLLDCLFRGRNIDDGFKVLDEMLKR 217

Query: 653 ESEVSANHAT 682
           +S+   N++T
Sbjct: 218 DSDFPPNNST 227


>ref|XP_006292416.1| hypothetical protein CARUB_v10018630mg [Capsella rubella]
           gi|482561123|gb|EOA25314.1| hypothetical protein
           CARUB_v10018630mg [Capsella rubella]
          Length = 767

 Score = 91.3 bits (225), Expect = 3e-16
 Identities = 66/208 (31%), Positives = 102/208 (49%), Gaps = 4/208 (1%)
 Frame = +2

Query: 74  FLHVASENPSHPPSLYHLHEEDDPSSPVSQIVQIIKLQQDENWKSIPQLHQILCSSPPVS 253
           FL   S+N    P++    + +   S V++ ++ ++     +W S   L  +L SS  VS
Sbjct: 22  FLRRFSDNIEPRPAI----KSESQESVVAKFLENLQRLPQHDWASSESLSSLLVSSSSVS 77

Query: 254 AHQFLRIARHFPSSGAALKFVEYL--RSNLCQFEPVYLSSVFQAAFELAIRERSSVDKLW 427
              F +I R   S   A+ F EYL   S   +     LS   Q+  E A  E  S DKL 
Sbjct: 78  PLVFPQITRRLGSYSLAISFFEYLDATSQSLKRREESLSLTLQSVIEFAGSEPDSQDKLL 137

Query: 428 LLVERSKEMGVPLSINSATLLIRRFD--ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFG 601
            L E + E  +P ++ +  LLIR F     V++++ VY  ++  ++N  VRN ++ VL  
Sbjct: 138 QLYEIAIEKNIPFTVVATKLLIRWFGRMGMVNQSVLVYERLDSNMKNTQVRNVVIEVLLR 197

Query: 602 RGCLEDARKVLDEMLEPESEVSANHATA 685
            G ++DA KVLDEM + +S    N  TA
Sbjct: 198 NGLVDDAFKVLDEMFQKDSVFPPNRITA 225


>ref|NP_191711.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75183498|sp|Q9M316.1|PP292_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g61520, mitochondrial; Flags: Precursor
           gi|6850843|emb|CAB71082.1| putative protein [Arabidopsis
           thaliana] gi|332646696|gb|AEE80217.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 90.5 bits (223), Expect = 4e-16
 Identities = 62/181 (34%), Positives = 92/181 (50%), Gaps = 4/181 (2%)
 Frame = +2

Query: 155 VSQIVQIIKLQQDENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFVEYL--R 328
           V + V+ ++     +W S   L  ++ SS   S   F +I R   S   A+ F EYL  +
Sbjct: 45  VVKFVKTLQKTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAK 104

Query: 329 SNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLLIRRFD- 505
           S   +     LS   Q+  E A  E    DKL  L E +KE  +PL++ +  LLIR F  
Sbjct: 105 SQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTVVATNLLIRWFGR 164

Query: 506 -ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEVSANHAT 682
              V++++ VY  ++  ++N  VRN ++ VL   G ++DA KVLDEML+ ES    N  T
Sbjct: 165 MGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRIT 224

Query: 683 A 685
           A
Sbjct: 225 A 225


>ref|NP_198189.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|9502152|gb|AAF88005.1| similar to a large family of
           Arabidopsis thaliana salt inducible protein-like
           proteins; contains similarity to Pfam family PF01535
           (Domain of unknown function), score=340.5, E=1.9e-98,
           N=2 [Arabidopsis thaliana] gi|332006410|gb|AED93793.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 727

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
 Frame = +2

Query: 164 IVQIIKLQQD---ENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFVEYL--R 328
           +V+ +K  Q+    +W S   L  ++ SS   S   F +I R   S   A+ F EYL  +
Sbjct: 45  VVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAK 104

Query: 329 SNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLLIRRFD- 505
           S   +     LS   Q+  E A  E    DKL  L E +KE  +PL+I +  LLIR F  
Sbjct: 105 SQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGR 164

Query: 506 -ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEVSANHAT 682
              V++++ VY  ++  ++N  VRN ++ VL   G ++DA KVLDEML+ ES    N  T
Sbjct: 165 MGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRIT 224

Query: 683 A 685
           A
Sbjct: 225 A 225


>ref|NP_680234.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75174514|sp|Q9LKU8.1|PP401_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g28460 gi|9502149|gb|AAF88002.1| contains similarity
           to Pfam family PF01535 (Domain of unknown function),
           score=340.5, E=1.9e-98, N=2 [Arabidopsis thaliana]
           gi|15529206|gb|AAK97697.1| AT5g28460/F21B23_120
           [Arabidopsis thaliana] gi|27363272|gb|AAO11555.1|
           At5g28460/F21B23_120 [Arabidopsis thaliana]
           gi|332006418|gb|AED93801.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 766

 Score = 90.1 bits (222), Expect = 6e-16
 Identities = 64/181 (35%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
 Frame = +2

Query: 164 IVQIIKLQQD---ENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFVEYL--R 328
           +V+ +K  Q+    +W S   L  ++ SS   S   F +I R   S   A+ F EYL  +
Sbjct: 45  VVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAK 104

Query: 329 SNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLLIRRFD- 505
           S   +     LS   Q+  E A  E    DKL  L E +KE  +PL+I +  LLIR F  
Sbjct: 105 SQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTIVATKLLIRWFGR 164

Query: 506 -ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEVSANHAT 682
              V++++ VY  ++  ++N  VRN ++ VL   G ++DA KVLDEML+ ES    N  T
Sbjct: 165 MGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRIT 224

Query: 683 A 685
           A
Sbjct: 225 A 225


>gb|AAM61467.1| unknown [Arabidopsis thaliana]
          Length = 766

 Score = 89.7 bits (221), Expect = 7e-16
 Identities = 63/181 (34%), Positives = 93/181 (51%), Gaps = 7/181 (3%)
 Frame = +2

Query: 164 IVQIIKLQQD---ENWKSIPQLHQILCSSPPVSAHQFLRIARHFPSSGAALKFVEYL--R 328
           +V+ +K  Q+    +W S   L  ++ SS   S   F +I R   S   A+ F EYL  +
Sbjct: 45  VVKFVKTLQNTPQHDWASSESLSALVVSSSSASPLVFSQITRRLGSYSLAISFFEYLDAK 104

Query: 329 SNLCQFEPVYLSSVFQAAFELAIRERSSVDKLWLLVERSKEMGVPLSINSATLLIRRFD- 505
           S   +     LS   Q+  E A  E    DKL  L E +KE  +PL++ +  LLIR F  
Sbjct: 105 SQSLKRREESLSLALQSVIEFAGSEPDPRDKLLRLYEIAKEKNIPLTVVATKLLIRWFGR 164

Query: 506 -ASVDRAMSVYNAVEPRLRNVHVRNSLLRVLFGRGCLEDARKVLDEMLEPESEVSANHAT 682
              V++++ VY  ++  ++N  VRN ++ VL   G ++DA KVLDEML+ ES    N  T
Sbjct: 165 MGMVNQSVLVYERLDSNMKNSQVRNVVVDVLLRNGLVDDAFKVLDEMLQKESVFPPNRIT 224

Query: 683 A 685
           A
Sbjct: 225 A 225