BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00030639
         (907 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]                  261   2e-98
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]                  258   6e-98
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc...   260   3e-97
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni...   260   6e-97
gb|AAM94350.1| gag-pol polyprotein [Zea mays]                         259   6e-97
gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japoni...   261   1e-96
dbj|BAH80072.1| putative unclassified retrotransposon protein [O...   261   1e-96
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja...   260   1e-96
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa...   256   2e-96
emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]        261   2e-96
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]         256   2e-96
gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]              258   2e-96
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]       255   2e-96
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum...   257   3e-96
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni...   256   5e-96
emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]        258   7e-96
gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]     256   7e-96
gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japoni...   255   5e-94
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]        250   5e-94
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]                250   1e-93

>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1720

 Score =  261 bits (667), Expect(2) = 2e-98
 Identities = 127/207 (61%), Positives = 155/207 (74%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FVRDFS+I APL+ELTKK     W  + E  F+ LK+ L  APLL LPDF K FE+ECDA
Sbjct: 1020 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1079

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL Q+ +P+AYFSEKL   +LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1080 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1139

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L ++KSQA LNRRHA+WVEF+ETF YV+ HKKGK+N++ DALSRRY +L+ +  KI
Sbjct: 1140 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKDNVIADALSRRYTMLSQLDFKI 1199

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD Y  D+ F  +LE+C   R
Sbjct: 1200 FGLETIKDQYVHDADFKDVLENCREGR 1226



 Score =  125 bits (315), Expect(2) = 2e-98
 Identities = 57/94 (60%), Positives = 69/94 (73%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRSLEDH+DHLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 927  VVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 986

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WP P T TQVRSFLG   FYRRF
Sbjct: 987  VDKAKIEAIESWPQPKTVTQVRSFLGXAGFYRRF 1020


>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
          Length = 1717

 Score =  258 bits (658), Expect(2) = 6e-98
 Identities = 126/207 (60%), Positives = 154/207 (74%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FVRDFS+I APL+ELTKK     W  + E  F+ LK+ L  APLL LPDF K FE+ECDA
Sbjct: 1017 FVRDFSTIAAPLNELTKKDVPYSWGTAQEEAFTVLKDKLTHAPLLQLPDFNKTFELECDA 1076

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL Q+ +P+AYFSEKL   +LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1077 SGIGLGGVLLQDGKPVAYFSEKLSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1136

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L ++KSQA LNRRHA+WVEF+ETF YV+  KKGK+N++ DALSRRY +L+ +  KI
Sbjct: 1137 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKDKKGKDNVIADALSRRYTMLSQLDFKI 1196

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD Y  D+ F  +LE+C   R
Sbjct: 1197 FGLETIKDQYVHDADFKDVLENCREGR 1223



 Score =  127 bits (320), Expect(2) = 6e-98
 Identities = 58/94 (61%), Positives = 70/94 (74%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRSLEDH+DHLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 924  VVYFDDILIYSRSLEDHLDHLRAVFTALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 983

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WP P T TQVRSFLGL  FYRRF
Sbjct: 984  VDKAKIEAIESWPQPKTVTQVRSFLGLAGFYRRF 1017


>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 889

 Score =  260 bits (665), Expect(2) = 3e-97
 Identities = 125/207 (60%), Positives = 154/207 (74%)
 Frame = -1

Query: 625 FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
           FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 302 FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 361

Query: 445 SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
           S IG+GGVL QE +P+AYFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 362 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 421

Query: 265 DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
           DH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 422 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 481

Query: 85  LGFALIKDLYASDSFFAPILEHCMRSR 5
            G   IK+ YA D  F  +L +CM  R
Sbjct: 482 FGLETIKEQYAHDDDFKDVLLNCMEGR 508



 Score =  122 bits (307), Expect(2) = 3e-97
 Identities = 56/94 (59%), Positives = 67/94 (71%)
 Frame = -3

Query: 905 VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
           V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 209 VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 268

Query: 725 VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
           VD+ K  AI  WP PTT TQVRSFLGL  FYR F
Sbjct: 269 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRHF 302


>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  260 bits (664), Expect(2) = 6e-97
 Identities = 125/211 (59%), Positives = 156/211 (73%)
 Frame = -1

Query: 637  FIGVFVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEV 458
            F  +FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE+
Sbjct: 881  FYRLFVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEL 940

Query: 457  ECDASDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREF 278
            ECDAS IG+GGVL QE +P+AYFSEKL   +LN  TYDK+L+ALV  L+T QHYLWP+EF
Sbjct: 941  ECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKQLFALVRTLETWQHYLWPKEF 1000

Query: 277  VIHSDHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHV 98
            VIHSDH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++VDALSRRY +L+ +
Sbjct: 1001 VIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIVDALSRRYAMLSQL 1060

Query: 97   QTKILGFALIKDLYASDSFFAPILEHCMRSR 5
              KI G   IK+ YA D  F  +L +C   R
Sbjct: 1061 DFKIFGLETIKEQYAHDDDFKDVLLNCKEGR 1091



 Score =  122 bits (305), Expect(2) = 6e-97
 Identities = 56/94 (59%), Positives = 67/94 (71%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 792  VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 851

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI  WP PTT TQVRSFLGL  FYR F
Sbjct: 852  VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRLF 885


>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
          Length = 1618

 Score =  259 bits (662), Expect(2) = 6e-97
 Identities = 127/203 (62%), Positives = 152/203 (74%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ELTKKG    W +  E  F+ LK+ L  APLL LPDF K FE+ECDA
Sbjct: 964  FVKDFSTIAAPLNELTKKGVHFSWGKVQEHAFNVLKDKLTHAPLLQLPDFNKTFELECDA 1023

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL  + LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1024 SGIGLGGVLLQEGKPVAYFSEKLSGSVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1083

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LL  +  KI
Sbjct: 1084 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLNQLDYKI 1143

Query: 85   LGFALIKDLYASDSFFAPILEHC 17
             G   IKD Y  D+ F  +L HC
Sbjct: 1144 FGLETIKDQYVHDADFKDVLLHC 1166



 Score =  122 bits (307), Expect(2) = 6e-97
 Identities = 54/94 (57%), Positives = 69/94 (73%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+++HVDH+R V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 871  VVYFDDILIYSKSMDEHVDHMRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 930

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI  WP P T TQVRSFLGL  FYRRF
Sbjct: 931  VDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRF 964


>gb|AAQ56339.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1234

 Score =  261 bits (666), Expect(2) = 1e-96
 Identities = 130/207 (62%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 777  FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 836

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 837  SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 896

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 897  DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 956

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD YA D+ F  +L HC   R
Sbjct: 957  FGLETIKDQYAHDADFNDVLLHCKDGR 983



 Score =  120 bits (301), Expect(2) = 1e-96
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -3

Query: 905 VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
           V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 684 VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 743

Query: 725 VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
           VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 744 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 777


>dbj|BAH80072.1| putative unclassified retrotransposon protein [Oryza sativa Indica
           Group]
          Length = 848

 Score =  261 bits (666), Expect(2) = 1e-96
 Identities = 130/207 (62%), Positives = 152/207 (73%)
 Frame = -1

Query: 625 FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
           FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 325 FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 384

Query: 445 SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
           S IG+GGVL QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 385 SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 444

Query: 265 DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
           DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 445 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 504

Query: 85  LGFALIKDLYASDSFFAPILEHCMRSR 5
            G   IKD YA D+ F  +L HC   R
Sbjct: 505 FGLETIKDQYAHDADFNDVLLHCKDGR 531



 Score =  120 bits (301), Expect(2) = 1e-96
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -3

Query: 905 VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
           V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 232 VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 291

Query: 725 VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
           VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 292 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 325


>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
            gi|31431012|gb|AAP52850.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 2447

 Score =  260 bits (665), Expect(2) = 1e-96
 Identities = 130/207 (62%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 961  FVQDFSTIAAPLNVLTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 1020

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1021 SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1080

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 1081 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1140

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD YA D+ F  +L HC   R
Sbjct: 1141 FGLETIKDQYAHDADFNDVLLHCKDGR 1167



 Score =  120 bits (301), Expect(2) = 1e-96
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 868  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 927

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 928  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 961



 Score =  128 bits (321), Expect(2) = 8e-52
 Identities = 70/169 (41%), Positives = 98/169 (57%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            F+ +FS I  P+ +L KK    +W    E+ F  LK  L  +P+L LPD  K F V CDA
Sbjct: 1753 FIENFSKIARPMTQLLKKEEKFVWSPQCEKAFQTLKEKLVSSPVLILPDTRKDFMVYCDA 1812

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S  G+G VL QE   +AY S +L     N PT+D EL A+V  LK  +HYL      I++
Sbjct: 1813 SPQGLGCVLMQEGHVVAYASRQLWPHEGNYPTHDLELAAVVHALKIWRHYLIGNRCEIYT 1872

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRR 119
            DH +L Y+ +Q+ LN R  RW+E ++ +   + +  GK N+V DALSR+
Sbjct: 1873 DHKSLKYIFTQSDLNLRQRRWLELIKDYDVGIHYHPGKANVVADALSRK 1921



 Score =  103 bits (257), Expect(2) = 8e-52
 Identities = 49/94 (52%), Positives = 63/94 (67%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V++ DDILVYS+S EDH  HLR VL  LR+  ++A L+KC F      FLG+++S+ G  
Sbjct: 1660 VVFIDDILVYSQSEEDHQHHLRLVLGKLREHQLYAKLSKCEFWLSEVKFLGHVISAKGVA 1719

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD E   A+ DW  P T TQ+RSFLGL  +YRRF
Sbjct: 1720 VDPETVTAVTDWKQPKTVTQIRSFLGLAGYYRRF 1753


>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|15217296|gb|AAK92640.1|AC079634_1 Putative
            retroelement [Oryza sativa Japonica Group]
            gi|31431373|gb|AAP53161.1| retrotransposon protein,
            putative, Ty3-gypsy subclass [Oryza sativa Japonica
            Group]
          Length = 1708

 Score =  256 bits (655), Expect(2) = 2e-96
 Identities = 124/207 (59%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +PI YFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 1049 SGIGLGGVLLQEGKPIEYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IK+ YA D  F  +L +C   R
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGR 1195



 Score =  124 bits (310), Expect(2) = 2e-96
 Identities = 57/94 (60%), Positives = 68/94 (72%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 896  VVYFDDILIYSRSIEDHHGHLRAVFDALRDERLFGNLEKCTFCTDRVSFLGYVVTPQGIE 955

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI  WP PTT TQVRSFLGL  FYRRF
Sbjct: 956  VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRF 989


>emb|CAE02877.1| OSJNBb0022F23.14 [Oryza sativa Japonica Group]
          Length = 1431

 Score =  261 bits (666), Expect(2) = 2e-96
 Identities = 130/207 (62%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 906  FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 965

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 966  SGIGLGGVLLQEGKPVAYFSEKLTGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1025

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 1026 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1085

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD YA D+ F  +L HC   R
Sbjct: 1086 FGLETIKDQYAHDADFNDVLLHCKDGR 1112



 Score =  119 bits (299), Expect(2) = 2e-96
 Identities = 53/94 (56%), Positives = 68/94 (72%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+ +H  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 813  VVYFDDILIYSKSMGEHFKHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 872

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 873  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 906


>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
          Length = 1170

 Score =  256 bits (653), Expect(2) = 2e-96
 Identities = 123/207 (59%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K  E+ECDA
Sbjct: 622  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTLELECDA 681

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 682  SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 741

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 742  DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 801

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IK+ YA D  F  +L +C   R
Sbjct: 802  FGLETIKEQYAHDDDFKDVLLNCKEGR 828



 Score =  124 bits (312), Expect(2) = 2e-96
 Identities = 57/94 (60%), Positives = 68/94 (72%)
 Frame = -3

Query: 905 VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
           V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 529 VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 588

Query: 725 VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
           VD+ K  AI  WP PTT TQVRSFLGL  FYRRF
Sbjct: 589 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRF 622


>gb|AAF79348.1|AC007887_7 F15O4.13 [Arabidopsis thaliana]
          Length = 1887

 Score =  258 bits (660), Expect(2) = 2e-96
 Identities = 128/203 (63%), Positives = 154/203 (75%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS++ APL E+ KK     W ++ E  F ALK  L  AP+L LPDF K FE+ECDA
Sbjct: 1153 FVKDFSTLAAPLTEVIKKNVGFKWEQAQEDAFQALKEKLTHAPVLSLPDFLKTFEIECDA 1212

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S +GIG VL Q+K+PIAYFSEKL  ATLN PTYDKELYALV  L+T QHYLWP+EFVIH+
Sbjct: 1213 SGVGIGVVLMQDKKPIAYFSEKLGGATLNYPTYDKELYALVRALQTGQHYLWPKEFVIHT 1272

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +LK Q  LN+RHARWVEF+ETF YV+ +KKGK+N+V DALSRRYVLL+ +  K+
Sbjct: 1273 DHESLKHLKGQQKLNKRHARWVEFIETFPYVIKYKKGKDNVVADALSRRYVLLSSLDAKL 1332

Query: 85   LGFALIKDLYASDSFFAPILEHC 17
            LGF  IK LYA+DS F  I   C
Sbjct: 1333 LGFEHIKSLYANDSDFEKIYSSC 1355



 Score =  121 bits (304), Expect(2) = 2e-96
 Identities = 54/94 (57%), Positives = 77/94 (81%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            ++YFDDILVYS+SLE+HV+HL+ VL+ LR+  ++ANL KC+F +++  FLG++VS+DG +
Sbjct: 1060 IVYFDDILVYSKSLEEHVEHLKMVLEVLRKEKLYANLKKCTFGTDNLVFLGFVVSTDGVK 1119

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VDEEK  AI++WP+P +  +VRSF GL  FYRRF
Sbjct: 1120 VDEEKVKAIREWPSPKSVGEVRSFHGLAGFYRRF 1153


>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
          Length = 1587

 Score =  255 bits (652), Expect(2) = 2e-96
 Identities = 123/207 (59%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 1048

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQA  NRRHA+WVEF+E+F YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 1109 DHESLKHIRSQAKHNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IK+ YA D  F  +L +C   R
Sbjct: 1169 FGLETIKEQYAHDDDFKDVLLNCKEGR 1195



 Score =  124 bits (312), Expect(2) = 2e-96
 Identities = 57/94 (60%), Positives = 68/94 (72%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 896  VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 955

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI  WP PTT TQVRSFLGL  FYRRF
Sbjct: 956  VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRF 989


>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
            aegilopoides]
          Length = 1704

 Score =  257 bits (657), Expect(2) = 3e-96
 Identities = 124/207 (59%), Positives = 155/207 (74%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FVRDFS+I APL+E+TKK    +W  + E  F+ LK+ L  APLL LP+F K FE+ECDA
Sbjct: 1005 FVRDFSTIAAPLNEVTKKDVPFVWGTAQEEAFTVLKDKLTYAPLLQLPNFNKTFELECDA 1064

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL Q+ +P+AYFSEK    +LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1065 SGIGLGGVLLQDGKPVAYFSEKFSGPSLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1124

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L ++KSQA LNRRHA+WVEF+ETF YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 1125 DHESLKHIKSQAKLNRRHAKWVEFIETFPYVIKHKKGKENVIADALSRRYTMLSQLDFKI 1184

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD Y  D+ F  +L++C   R
Sbjct: 1185 FGLETIKDQYVHDAEFKDVLQNCKEGR 1211



 Score =  122 bits (306), Expect(2) = 3e-96
 Identities = 55/94 (58%), Positives = 70/94 (74%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+SLE+H++HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 912  VVYFDDILIYSKSLEEHLEHLRAVFIALRDARLFGNLGKCTFCTDRVSFLGYVVTPQGIE 971

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WP P T TQVRSFLGL  FYRRF
Sbjct: 972  VDKAKIEAIESWPHPKTVTQVRSFLGLAGFYRRF 1005


>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1616

 Score =  256 bits (654), Expect(2) = 5e-96
 Identities = 124/207 (59%), Positives = 152/207 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE ECDA
Sbjct: 989  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFEHECDA 1048

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 1049 SGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 1108

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++ DALSRRY +L+ +  KI
Sbjct: 1109 DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSRRYAMLSQLDFKI 1168

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IK+ YA D  F  +L +C   R
Sbjct: 1169 FGLETIKEQYAHDDDFKNVLLNCKEGR 1195



 Score =  122 bits (307), Expect(2) = 5e-96
 Identities = 56/94 (59%), Positives = 68/94 (72%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FL Y+V+  G  
Sbjct: 896  VVYFDDILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLSYVVTPQGIE 955

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI +WP PTT TQVRSFLGL  FYRRF
Sbjct: 956  VDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRF 989


>emb|CAE02465.2| OSJNBa0042D13.18 [Oryza sativa Japonica Group]
          Length = 2241

 Score =  258 bits (659), Expect(2) = 7e-96
 Identities = 128/207 (61%), Positives = 151/207 (72%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 1055 FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 1114

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            + IG+GGV  QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1115 NGIGLGGVFLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1174

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 1175 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1234

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD YA D+ F  +L HC   R
Sbjct: 1235 FGLETIKDQYAHDADFNDVLLHCKDGR 1261



 Score =  120 bits (301), Expect(2) = 7e-96
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 962  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLKKCTFCTDRVSFLGYVVTPQGIE 1021

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 1022 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 1055



 Score = 58.5 bits (140), Expect(2) = 1e-16
 Identities = 30/73 (41%), Positives = 44/73 (60%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            F++DFS+I  PL  L  K +   + ++  ++F  LK AL   P++  PD+T  FE+ CDA
Sbjct: 2152 FIKDFSTIARPLTNLLAKDTPFEFDDACLKSFEILKKALDSGPIIQPPDWTLPFEIMCDA 2211

Query: 445  SDIGIGGVLHQEK 407
            SD  +G VL Q K
Sbjct: 2212 SDFAVGAVLGQTK 2224



 Score = 55.1 bits (131), Expect(2) = 1e-16
 Identities = 32/93 (34%), Positives = 44/93 (47%)
 Frame = -3

Query: 902  IYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*RV 723
            I+ DD  VY ++    + +L +VL+  ++  +  N  KC F       LG+ VS  G   
Sbjct: 2060 IFMDDFSVYGKTFGHCLQNLDKVLQRCQEKDLVLNWEKCHFMVREGIVLGHRVSERGIEF 2119

Query: 722  DEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            D  K   I   P P     +RSFLG   FYRRF
Sbjct: 2120 DRAKIDVIDQLPPPVNIKGIRSFLGHADFYRRF 2152


>gb|ABE60891.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1713

 Score =  256 bits (654), Expect(2) = 7e-96
 Identities = 131/203 (64%), Positives = 150/203 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FVR FS+I APL+ELTKKG    W E  E+ F  LK  L + PLL LPDFTK FEVECDA
Sbjct: 964  FVRGFSTIAAPLNELTKKGVAFQWGEPQEKAFQELKKRLSEGPLLVLPDFTKTFEVECDA 1023

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IGIGGVL Q  +P+AYFSEKL  A LN   YDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1024 SGIGIGGVLMQNGQPVAYFSEKLGGAQLNYSVYDKELYALVRALETWQHYLWPKEFVIHS 1083

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH AL YLK QA LNRRHA+WVEF+ETF YVV +KKGKENIV DALSR+ VLL  ++ K+
Sbjct: 1084 DHEALKYLKGQAKLNRRHAKWVEFIETFPYVVKYKKGKENIVADALSRKNVLLNQLEVKV 1143

Query: 85   LGFALIKDLYASDSFFAPILEHC 17
             G   IK+LY++D  F+     C
Sbjct: 1144 TGIESIKELYSADLDFSEPYAKC 1166



 Score =  122 bits (306), Expect(2) = 7e-96
 Identities = 55/94 (58%), Positives = 73/94 (77%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS++LE+HV H++QVL  LR+  ++ANL KC+FC++   FLG++VS  G +
Sbjct: 871  VVYFDDILIYSKTLEEHVAHIQQVLDVLRKEQLYANLEKCTFCTDQVVFLGFVVSGLGIQ 930

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VDE K  AIKDWPTP   +QV+SF GL  FYRRF
Sbjct: 931  VDESKVKAIKDWPTPENVSQVKSFRGLAGFYRRF 964


>gb|AAQ56338.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
          Length = 1619

 Score =  255 bits (651), Expect(2) = 5e-94
 Identities = 128/207 (61%), Positives = 151/207 (72%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 940  FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDA 999

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE + +AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 1000 SGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1059

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ +ALSRRY LLT +  KI
Sbjct: 1060 DHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSRRYTLLTQLDYKI 1119

Query: 85   LGFALIKDLYASDSFFAPILEHCMRSR 5
             G   IKD YA D+ F  +L HC   R
Sbjct: 1120 FGLETIKDQYAHDADFNDVLLHCKDGR 1146



 Score =  117 bits (293), Expect(2) = 5e-94
 Identities = 52/94 (55%), Positives = 68/94 (72%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 847  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 906

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WPTP T +QVRSFLGL  FY RF
Sbjct: 907  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYCRF 940


>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
          Length = 1239

 Score =  250 bits (639), Expect(2) = 5e-94
 Identities = 120/196 (61%), Positives = 148/196 (75%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APLHELTK+  T  W  +    F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 767  FVKDFSTIAAPLHELTKRNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDA 826

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL   +LN  TYDKEL+ALV  L+T QHYLWP+EFVIHS
Sbjct: 827  SGIGLGGVLLQEDKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHS 886

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L +++SQA LNRRHA+WVEF+E+F YV+ HKKGKEN++ +ALSRRY +L+ +  KI
Sbjct: 887  DHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIANALSRRYTMLSQLDFKI 946

Query: 85   LGFALIKDLYASDSFF 38
             G   IK+ YA D  F
Sbjct: 947  FGLETIKEQYAHDDDF 962



 Score =  122 bits (305), Expect(2) = 5e-94
 Identities = 56/94 (59%), Positives = 67/94 (71%)
 Frame = -3

Query: 905 VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
           V+YFD IL+YSRS+EDH  HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 674 VVYFDGILIYSRSIEDHHGHLRAVFDALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 733

Query: 725 VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
           VD+ K  AI  WP PTT TQVRSFLGL  FYRRF
Sbjct: 734 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRF 767


>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
          Length = 1667

 Score =  250 bits (639), Expect(2) = 1e-93
 Identities = 125/196 (63%), Positives = 145/196 (73%)
 Frame = -1

Query: 625  FVRDFSSIFAPLHELTKKGSTVLWLESHERTFSALKNALCQAPLL*LPDFTKHFEVECDA 446
            FV+DFS+I APL+ LTKKG    W  S E  F  LK+ L  APLL LPDF K FE+ECDA
Sbjct: 884  FVQDFSTIAAPLNALTKKGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDA 943

Query: 445  SDIGIGGVLHQEKRPIAYFSEKLMRATLN*PTYDKELYALVCVLKT*QHYLWPREFVIHS 266
            S IG+GGVL QE +P+AYFSEKL    LN  TYDKELYALV  L+T QHYLWP+EFVIHS
Sbjct: 944  SGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHS 1003

Query: 265  DHAALSYLKSQAYLNRRHARWVEFLETFSYVVVHKKGKENIVVDALSRRYVLLTHVQTKI 86
            DH +L ++ SQ  LNRRHA+WVEF+E+F YV+ HKKGKENI+ DALSRRY LLT +  KI
Sbjct: 1004 DHESLKHIHSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSRRYTLLTQLDYKI 1063

Query: 85   LGFALIKDLYASDSFF 38
             G   IKD Y  D+ F
Sbjct: 1064 FGLETIKDQYVHDADF 1079



 Score =  120 bits (301), Expect(2) = 1e-93
 Identities = 53/94 (56%), Positives = 69/94 (73%)
 Frame = -3

Query: 905  VIYFDDILVYSRSLEDHVDHLRQVLKCLRQGSMFANLAKCSFCSESTNFLGYIVSSDG*R 726
            V+YFDDIL+YS+S+ +H +HLR V   LR   +F NL KC+FC++  +FLGY+V+  G  
Sbjct: 791  VVYFDDILIYSKSMGEHFNHLRAVFNALRDARLFGNLEKCTFCTDRVSFLGYVVTPQGIE 850

Query: 725  VDEEKTAAIKDWPTPTTPTQVRSFLGLTCFYRRF 624
            VD+ K  AI+ WPTP T +QVRSFLGL  FYRRF
Sbjct: 851  VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRF 884