BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00030594
         (830 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob...    67   4e-21
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob...    65   7e-21
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...    70   7e-21
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]               70   8e-21
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...    70   8e-21
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...    65   3e-20
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...    70   5e-20
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob...    66   3e-19
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210...    66   7e-19
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A...    68   5e-16
gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [...    64   7e-16
ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein A...    58   2e-15
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]                62   6e-15
gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [...    54   2e-14
gb|EMJ25302.1| hypothetical protein PRUPE_ppa015621mg, partial [...    58   2e-14
gb|ABK28199.1| unknown [Arabidopsis thaliana]                          60   8e-14
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...    60   8e-14
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...    60   8e-14
gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma ...    51   3e-13
gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [...    56   1e-12

>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 1011

 Score = 67.4 bits (163), Expect(2) = 4e-21
 Identities = 35/79 (44%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
 Frame = -1

Query: 239  SPPIHDWIKVNFDGDVIDG-DLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQG 63
            SPP  DWI VN DG       +AA  GVLRD+ G WI GY    ++ SV   ELWG+ +G
Sbjct: 881  SPPPEDWIAVNSDGAFKSAVGIAAAGGVLRDSHGTWIVGYACKLETSSVFRAELWGVYKG 940

Query: 62   LKIA*EKVYR*LCIESDSQ 6
            L++A E+ +R + ++SD++
Sbjct: 941  LQLAWERGFRKVKLQSDNK 959



 Score = 61.2 bits (147), Expect(2) = 4e-21
 Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 8/206 (3%)
 Frame = -3

Query: 825  LSSNDDFSVSTTYDMIHNSFVGALTDVV------IFWVVWCLDVPH*VRSFIWLVVCGSI 664
            LS    F++S+TY       +G+L D        ++ +VW L  PH V  F++  +   I
Sbjct: 683  LSPYGYFTISSTY-----KHLGSLADSTREENNKMWRLVWDLRGPHRVCLFLFFCLHKRI 737

Query: 663  LTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI 484
            LTN ER      +   C  C    E+  H+LR C     +W+ +     ++ FFQ     
Sbjct: 738  LTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILPQSGINQFFQIPLID 797

Query: 483  *LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQG--VDFLGRKDVFIRSYVKDY 310
             L +NL  K ++V  +PW      +     +WRN  +F+G  +   GR  +     V  +
Sbjct: 798  WLSSNLNLKNLYVFDVPWNIVLGITCWYTWKWRNLFIFEGRELSVEGRLSIIRSVAVDSH 857

Query: 309  FTAIPNLGADNQVASSIEQFISWEPP 232
             T          +    E  + W PP
Sbjct: 858  NTWSTPRIISGGMRHQEEILVGWSPP 883


>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 391

 Score = 65.5 bits (158), Expect(2) = 7e-21
 Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 3/201 (1%)
 Frame = -3

Query: 825 LSSNDDFSVSTTYDMIHNSFVGALTDVVIFW-VVWCLDVPH*VRSFIWLVVCGSILTNVE 649
           LS +  F++S+TY+ + +       D    W +VW    PH V  F++  +   ILTN E
Sbjct: 57  LSPSRYFTISSTYEHLWSLADSTREDNNKMWRLVWDWRGPHRVCLFLFFCLHKRILTNAE 116

Query: 648 RCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTN 469
              H   +   C       E+  H+LR C  ++ +W+++     ++ FFQ      L +N
Sbjct: 117 GVRHKMSSDASCPHYYGAKETCLHVLRDCPASKTLWRNILPQSGINQFFQTPLIDWLSSN 176

Query: 468 LLSKGVHVALLPWVATFAHSL**I*RWRNERVFQG--VDFLGRKDVFIRSYVKDYFTAIP 295
           L  K ++V  +PW   F  +     +WRN  +F+G  +   GR  +     V  + T   
Sbjct: 177 LNLKNLYVFDVPWNIVFGIACWYTWKWRNLFIFEGRELSVEGRLSIIKSMAVNSHNTWST 236

Query: 294 NLGADNQVASSIEQFISWEPP 232
                  +    E  + W PP
Sbjct: 237 PSIISGGMRHQEEILVGWSPP 257



 Score = 62.4 bits (150), Expect(2) = 7e-21
 Identities = 35/79 (44%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -1

Query: 239 SPPIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQG 63
           SPP  DWI VN DG        AA  GVLRDA G WI GY    ++ S    ELWG  +G
Sbjct: 255 SPPPKDWIAVNSDGVFKSAARTAAAGGVLRDAHGTWIVGYACKLETSSGLRVELWGFYKG 314

Query: 62  LKIA*EKVYR*LCIESDSQ 6
           L++A E+ +R + ++SD++
Sbjct: 315 LQLAWERGFRKVKLQSDNK 333


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score = 70.5 bits (171), Expect(2) = 7e-21
 Identities = 46/161 (28%), Positives = 69/161 (42%)
 Frame = -3

Query: 711 PH*VRSFIWLVVCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSL 532
           P  VR F+WLVV   I+TNVER   H     +C  C  G E++ H+LR C    GIW  L
Sbjct: 3   PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62

Query: 531 CLTHYLSDFFQDDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFL 352
                +  FF       +  NL  +G       W   F  ++    +WR   +F G    
Sbjct: 63  VPRDQIRQFFTASLLEWIYKNLRERG------SWPTVFVMAVWWGWKWRCGNIFGGNGKC 116

Query: 351 GRKDVFIRSYVKDYFTAIPNLGADNQVASSIEQFISWEPPD 229
             +  FI+   ++   A   +  +    S +E+ +SW  P+
Sbjct: 117 RDRVKFIKDLAEEVAIANAFVKGNEVRVSRVERLVSWVSPE 157



 Score = 57.4 bits (137), Expect(2) = 7e-21
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 PIHDWIKVNFDGDVIDGDLAATTG-VLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           P   W+K+N DG        AT G VLRD +G WI G+  N   CS P+ ELWG+  GL 
Sbjct: 156 PEDGWVKLNTDGASRGNPGFATAGGVLRDHNGAWIGGFAVNIGVCSAPLAELWGVYYGLF 215

Query: 56  IA*EKVYR*LCIESDSQL 3
           IA  +  R + +E DS++
Sbjct: 216 IAWGRGARRVELEVDSKM 233


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score = 69.7 bits (169), Expect(2) = 8e-21
 Identities = 51/199 (25%), Positives = 80/199 (40%)
 Frame = -3

Query: 828 KLSSNDDFSVSTTYDMIHNSFVGALTDVVIFWVVWCLDVPH*VRSFIWLVVCGSILTNVE 649
           K S +  FSV + Y+M+    V        F  +W + VP  V++F+WLV   +++T  E
Sbjct: 367 KFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEE 426

Query: 648 RCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTN 469
           R   H     +C  C  G ES+ H+LR C    GIW  +        FF       L  N
Sbjct: 427 RHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDN 486

Query: 468 LLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYFTAIPNL 289
           L  +      +PW   FA  +    +WR   +F        +  F++ +  + + A    
Sbjct: 487 LGDRS-GCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGN 545

Query: 288 GADNQVASSIEQFISWEPP 232
                    +E+ I W  P
Sbjct: 546 VLVGITQPRVERMIGWVSP 564



 Score = 57.8 bits (138), Expect(2) = 8e-21
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 PIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           P   W+KVN DG       LA+  GVLRD  G W  G+  N   CS P  ELWG+  GL 
Sbjct: 564 PCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLY 623

Query: 56  IA*EKVYR*LCIESDSQL 3
            A EK    + +E DS++
Sbjct: 624 FAWEKKVPRVELEVDSEV 641


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score = 69.7 bits (169), Expect(2) = 8e-21
 Identities = 51/199 (25%), Positives = 80/199 (40%)
 Frame = -3

Query: 828 KLSSNDDFSVSTTYDMIHNSFVGALTDVVIFWVVWCLDVPH*VRSFIWLVVCGSILTNVE 649
           K S +  FSV + Y+M+    V        F  +W + VP  V++F+WLV   +++T  E
Sbjct: 258 KFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAVMTEEE 317

Query: 648 RCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTN 469
           R   H     +C  C  G ES+ H+LR C    GIW  +        FF       L  N
Sbjct: 318 RHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLFEWLYDN 377

Query: 468 LLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYFTAIPNL 289
           L  +      +PW   FA  +    +WR   +F        +  F++ +  + + A    
Sbjct: 378 LGDRS-GCEDIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVKFVKEWAVEVYRAHSGN 436

Query: 288 GADNQVASSIEQFISWEPP 232
                    +E+ I W  P
Sbjct: 437 VLVGITQPRVERMIGWVSP 455



 Score = 57.8 bits (138), Expect(2) = 8e-21
 Identities = 33/78 (42%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 PIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           P   W+KVN DG       LA+  GVLRD  G W  G+  N   CS P  ELWG+  GL 
Sbjct: 455 PCVGWVKVNTDGASRGNPGLASAGGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLY 514

Query: 56  IA*EKVYR*LCIESDSQL 3
            A EK    + +E DS++
Sbjct: 515 FAWEKKVPRVELEVDSEV 532


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score = 64.7 bits (156), Expect(2) = 3e-20
 Identities = 52/167 (31%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
 Frame = -3

Query: 729 VWCLDVPH*VRSFIWLVVCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHAR 550
           VW +  P  V+ F+WL V   I+TN+ER   H    GIC  C  G E++ H+LR C    
Sbjct: 470 VWKVIAPERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMY 529

Query: 549 GIWQSLCLTHYLSDFFQDDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVF 370
           GIW  +        FF       +  NL   G  V   PW            +WR   VF
Sbjct: 530 GIWTRIIPRRKRGTFFTQTLLEWVYDNLGDSG-KVDGCPWSCVRWGW-----KWRCGNVF 583

Query: 369 QGVDFLGRKDV-FIRSYVKDYFTAIPNLGADNQVASSIEQFISWEPP 232
            GV+   R  V F+R    +   A    G   ++   IE+ +SW  P
Sbjct: 584 -GVNGKCRDMVKFVRDRASEVIQAHLVEGNSGKIRGRIERMVSWVKP 629



 Score = 60.8 bits (146), Expect(2) = 3e-20
 Identities = 33/78 (42%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 PIHDWIKVNFDG-DVIDGDLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           P   W+K+N DG    +  LA   G+LR  DG WI G+  N   CS P+ ELW +  GL 
Sbjct: 629 PAEGWLKLNTDGASKGNPGLATAGGILRQQDGSWIGGFAVNIGICSAPLAELWRVYYGLY 688

Query: 56  IA*EKVYR*LCIESDSQL 3
           IA E+    L +E DS+L
Sbjct: 689 IAWERKITRLEVEVDSEL 706


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score = 69.7 bits (169), Expect(2) = 5e-20
 Identities = 54/199 (27%), Positives = 81/199 (40%)
 Frame = -3

Query: 828  KLSSNDDFSVSTTYDMIHNSFVGALTDVVIFWVVWCLDVPH*VRSFIWLVVCGSILTNVE 649
            K + N DF+V + Y+++                +W L  P  VR FIWLV    I+TNVE
Sbjct: 614  KGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMVIMTNVE 673

Query: 648  RCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTN 469
            R   H      CS CN   ES+ H+LR C     IWQ L      ++FF        +  
Sbjct: 674  RVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFS-------QFE 726

Query: 468  LLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYFTAIPNL 289
             L   +  A   W   F+  +    +WR   VF        +  FI+   ++   A    
Sbjct: 727  WLFTNLDPAKGDWPTLFSMGIWWAWKWRCGDVFGERKLCRDRLKFIKDIAEEVRKAHVGT 786

Query: 288  GADNQVASSIEQFISWEPP 232
              ++   + +E+ I W+ P
Sbjct: 787  LNNHVKRARVERMIRWKAP 805



 Score = 55.1 bits (131), Expect(2) = 5e-20
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233  PIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
            P   W+K+  DG       LAA +G + +  G W+ G+  N  SC  P+ ELWG   GL 
Sbjct: 805  PSDRWVKLTTDGASRGHQGLAAASGAILNLQGEWLGGFALNIGSCDAPLAELWGAYYGLL 864

Query: 56   IA*EKVYR*LCIESDSQL 3
            IA +K +R + +  DS+L
Sbjct: 865  IAWDKGFRRVELNLDSEL 882


>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
          Length = 874

 Score = 66.2 bits (160), Expect(2) = 3e-19
 Identities = 35/79 (44%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
 Frame = -1

Query: 239 SPPIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQG 63
           SPP  DWI VN DG         A  GVLRDA G WI GY    ++ SV   ELWG+ +G
Sbjct: 753 SPPPEDWITVNLDGAFKSAARTTAAGGVLRDAHGTWIVGYACKLETSSVFRAELWGVYKG 812

Query: 62  LKIA*EKVYR*LCIESDSQ 6
           L++A E+ +R + ++SD++
Sbjct: 813 LQLAWERGFRKVKLQSDNK 831



 Score = 56.2 bits (134), Expect(2) = 3e-19
 Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 8/206 (3%)
 Frame = -3

Query: 825  LSSNDDFSVSTTYDMIHNSFVGALTDVV------IFWVVWCLDVPH*VRSFIWLVVCGSI 664
            LS +  F++S+TY+ +     G+L D        ++ +VW    PH V  F++  +   I
Sbjct: 555  LSPSGYFTISSTYEHL-----GSLADSTREENNKMWHLVWDWKGPHRVCLFLFFCLHKRI 609

Query: 663  LTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI 484
            LTN ER      +   C  C    E+  H+LR C  +  +W+ +     ++ FFQ     
Sbjct: 610  LTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWRRILPESGINQFFQIPLID 669

Query: 483  *LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQG--VDFLGRKDVFIRSYVKDY 310
             L +NL  K ++V  +PW   F  +     +  N  +F+G  +   GR ++     V  +
Sbjct: 670  WLSSNLNLKNLYVFDVPWNIVFGTTCWYTWKRSNLFIFEGRELSVEGRLNIIRSMAVDSH 729

Query: 309  FTAIPNLGADNQVASSIEQFISWEPP 232
             T          +    +  + W PP
Sbjct: 730  NTWSTYRIISGGMRHQEKILVGWSPP 755


>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
            putative protein [Arabidopsis thaliana]
          Length = 947

 Score = 65.9 bits (159), Expect(2) = 7e-19
 Identities = 34/79 (43%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
 Frame = -1

Query: 236  PPIHDWIKVNFDGDVIDG-DLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGL 60
            PP  +W+K+N DG       LA T GVLRD  GHW  G+  +   CS P+ ELWG+  GL
Sbjct: 843  PPDGEWVKLNTDGASRGNLGLATTGGVLRDGIGHWCGGFALDIGVCSAPLAELWGVYYGL 902

Query: 59   KIA*EKVYR*LCIESDSQL 3
             +A E+ +  + +E DS+L
Sbjct: 903  YMAWERRFTRVELEVDSEL 921



 Score = 55.1 bits (131), Expect(2) = 7e-19
 Identities = 41/154 (26%), Positives = 61/154 (39%)
 Frame = -3

Query: 690  IWLVVCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLS 511
            +W VV    L  V+  L H     +C  C  G E++ H+L+ C    GIW+ L       
Sbjct: 696  LWRVVA---LERVKTFLWHIGDTSVCQVCKGGDETILHVLKDCPSIAGIWRRLVQVQRSY 752

Query: 510  DFFQDDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFI 331
            DFF       L  NL  K        W   FA  +    +WR   VF  V     +  F 
Sbjct: 753  DFFNGSLFGWLYVNLGMKNAETG-YAWATLFAIVVWWSWKWRCGYVFGEVGKCRDRVKFF 811

Query: 330  RSYVKDYFTAIPNLGADNQVASSIEQFISWEPPD 229
            R    +   A      +  + + +E+ ++W+PPD
Sbjct: 812  RDLAAEVSHAHAIHSQNGGLRTRVERLVAWKPPD 845


>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 684

 Score = 68.2 bits (165), Expect(2) = 5e-16
 Identities = 36/82 (43%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
 Frame = -1

Query: 251 LFLG-SPPIHDWIKVNFDGDVIDGDLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWG 75
           +F+G  PP   W K+N DG     + A   G+LRD+ GHWI G+  N    SV M ELWG
Sbjct: 541 IFIGWIPPPWPWCKLNTDGSCRKSEGAGAGGILRDSVGHWISGFCLNIGESSVLMAELWG 600

Query: 74  ILQGLKIA*EKVYR*LCIESDS 9
           + QGL+IA +   + L +E DS
Sbjct: 601 LYQGLRIAWDTGIKCLLVEVDS 622



 Score = 43.1 bits (100), Expect(2) = 5e-16
 Identities = 38/167 (22%), Positives = 57/167 (34%)
 Frame = -3

Query: 732 VVWCLDVPH*VRSFIWLVVCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHA 553
           + W    P  VR F+W  +   + T  E    H      C  C    E + H+LR C   
Sbjct: 383 LAWTWKGPQAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIEDVIHVLRDCQCI 442

Query: 552 RGIWQSLCLTHYLSDFFQDDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERV 373
             +W  L        FFQ      +  NL +K    +   W   F  ++  +  WRN  +
Sbjct: 443 MRVWLRLVPARNHLSFFQSTLRDWITANLQNKWKIASPSTWECIFGVAIWRLWFWRNHFM 502

Query: 372 FQGVDFLGRKDVFIRSYVKDYFTAIPNLGADNQVASSIEQFISWEPP 232
             G        +++    +       N    +Q     E FI W PP
Sbjct: 503 VDG-KLTDSSTIYLDITARANEIHKLNNSHISQQPRRKEIFIGWIPP 548


>gb|EMJ04547.1| hypothetical protein PRUPE_ppa020364mg, partial [Prunus persica]
          Length = 295

 Score = 63.9 bits (154), Expect(2) = 7e-16
 Identities = 43/130 (33%), Positives = 60/130 (46%), Gaps = 1/130 (0%)
 Frame = -3

Query: 615 CSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTNLLSKGVHVALL 436
           C  C    ES  H+LR CS AR +W     +     FFQ DF   L  NL SK  H A +
Sbjct: 6   CDYCKWPIESTLHILRDCSRARNVWDLFMNSTKALPFFQTDFHPWLLNNLCSK-AHFAQI 64

Query: 435 PWVATFAHSL**I*RWRNERVFQG-VDFLGRKDVFIRSYVKDYFTAIPNLGADNQVASSI 259
           PW   F      I +WRN+ +F+   D        I +  KD+F AI      +  A+ +
Sbjct: 65  PWRILFVFICWYIWKWRNDFIFKNETDLPFNPRDLIFTATKDWFQAI---FCTSSGANKV 121

Query: 258 EQFISWEPPD 229
           +  ++W PP+
Sbjct: 122 QVLLAWVPPE 131



 Score = 47.0 bits (110), Expect(2) = 7e-16
 Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 236 PPIHDWIKVNFDGDVIDGDLAATTG-VLRDADGHWICGYVHNFKSCSVPMDELWGILQGL 60
           PP    +K+N DG       A   G VLRD  G WI G+  N     V   ELWG+  GL
Sbjct: 129 PPEIGVVKLNIDGSCRGSTGAIDAGGVLRDHLGQWIAGFAVNLGQGEVLDAELWGLFFGL 188

Query: 59  KIA*EKVYR*LCIESDS 9
            +A EK    + IE DS
Sbjct: 189 NLAVEKNLDDIVIEMDS 205


>ref|XP_006492639.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
           sinensis]
          Length = 569

 Score = 57.8 bits (138), Expect(2) = 2e-15
 Identities = 29/76 (38%), Positives = 41/76 (53%)
 Frame = -1

Query: 236 PPIHDWIKVNFDGDVIDGDLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           PP   W  +N DG    G  +   G++RD  G W+ G+     SCS+ + ELWG+ QGL+
Sbjct: 339 PPDWPWCSLNTDGAHNRGGTSTAWGLIRDHMGRWLSGFGMMIGSCSITVAELWGLYQGLQ 398

Query: 56  IA*EKVYR*LCIESDS 9
           +A     R L +E DS
Sbjct: 399 LAWNSGIRKLQVEIDS 414



 Score = 51.6 bits (122), Expect(2) = 2e-15
 Identities = 49/201 (24%), Positives = 76/201 (37%), Gaps = 3/201 (1%)
 Frame = -3

Query: 822 SSNDDFSVSTTYDMIHNSFVGALTDVVIFWVVWCLDVPH*VRSFIWLVVCGSILTNVERC 643
           S +  F+  + Y  + N     + D  ++ +VW    P  VR F+W V    + T  E  
Sbjct: 147 SKSGRFTTHSAYLALSNDT--PMHDDRLWRMVWNWKGPQSVRIFLWQVFHDRLKTKAELA 204

Query: 642 LHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTNLL 463
             H      C  C    E   H+LR C+  +  W  +   +    FF       LRTN+ 
Sbjct: 205 RRHIPVSTSCDRCGAVNEDAMHVLRDCALVKLFWLLILPANKRQQFFNSRLQEWLRTNVG 264

Query: 462 SKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDF---LGRKDVFIRSYVKDYFTAIPN 292
             G   ++  W   F  +L  +  WRN+  F        +   DV  R+         P 
Sbjct: 265 IVGRLGSVSNWAIFFGIALWRLWFWRNQFFFNQASMDPNVVLMDVLTRTAEMHKIHTHPL 324

Query: 291 LGADNQVASSIEQFISWEPPD 229
                +V     ++ISW+PPD
Sbjct: 325 TTGHIRVT----RWISWKPPD 341


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score = 61.6 bits (148), Expect(2) = 6e-15
 Identities = 54/185 (29%), Positives = 79/185 (42%), Gaps = 4/185 (2%)
 Frame = -3

Query: 822 SSNDDFSVSTTYDMIHNSFVGALTDVVIFWV-VWCLDVPH*VRSFIWLVVCGSILTNVER 646
           S++  F+V++ YD +      A       W   W       VR+F++  + G +LTN ER
Sbjct: 296 SASGQFTVASVYDYLRQLSSPAKARPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNRER 355

Query: 645 CLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFPI*LRTNL 466
                 T  +C  C    E++ H+LR C  A  +W  +   H  +DFF   FP  LR  L
Sbjct: 356 LHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKIIPQHEQNDFF--TFP--LREWL 411

Query: 465 LSKGVHVALL---PWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYFTAIP 295
           +S      L+   PW   F  +   + +WRN  VF       RK +   S +K   TA  
Sbjct: 412 VSNLQKQQLILGNPWSVVFGLACWCLWKWRNGVVFYAAFNPTRKRI---SMIKSMATATI 468

Query: 294 NLGAD 280
              AD
Sbjct: 469 ATSAD 473



 Score = 46.2 bits (108), Expect(2) = 6e-15
 Identities = 19/58 (32%), Positives = 37/58 (63%)
 Frame = -1

Query: 176 AATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLKIA*EKVYR*LCIESDSQL 3
           A+T GV+R+A+G W   ++     CS    ELWG+L GL++A +  ++ + ++ D+++
Sbjct: 514 ASTGGVIRNAEGDWQAEFLAKLGKCSAYRAELWGVLHGLRLAWDSGFKKVQVQVDNKM 571


>gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [Prunus persica]
          Length = 219

 Score = 53.5 bits (127), Expect(2) = 2e-14
 Identities = 39/147 (26%), Positives = 57/147 (38%)
 Frame = -3

Query: 672 GSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDD 493
           G IL+N +R   H      C  C    E + H+LR C   R +W         + F Q D
Sbjct: 1   GKILSNEQRVRRHLTLDSSCQCCGWPIECVLHILRDCFKVREVWFLFLKRGDAARFLQAD 60

Query: 492 FPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKD 313
           F   L +NL SK V+    PW   F  +   I +WRN                    + +
Sbjct: 61  FKAWLFSNLCSKSVY-GHQPWPVVFVFTCWFIWKWRN--------------------ISE 99

Query: 312 YFTAIPNLGADNQVASSIEQFISWEPP 232
           +  A PN        + ++  ++WEPP
Sbjct: 100 WLQACPN---SISKRTQVQIMLAWEPP 123



 Score = 52.4 bits (124), Expect(2) = 2e-14
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
 Frame = -1

Query: 236 PPIHDWIKVNFDGDVIDG-DLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGL 60
           PP++   K+N DG    G       G++RD+ G W+CG+  N         ELWG+  GL
Sbjct: 122 PPVNGVFKLNVDGSRKGGIGCIGAGGIIRDSFGDWMCGFAVNLGIGQTLDTELWGLFFGL 181

Query: 59  KIA*EKVYR*LCIESDS 9
           K+A  K    L IE DS
Sbjct: 182 KLAAAKAVARLSIEMDS 198


>gb|EMJ25302.1| hypothetical protein PRUPE_ppa015621mg, partial [Prunus persica]
          Length = 201

 Score = 58.2 bits (139), Expect(2) = 2e-14
 Identities = 44/146 (30%), Positives = 58/146 (39%)
 Frame = -3

Query: 666 ILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFP 487
           IL+N +R   H      C  C    ES  H+LR CS AR +W     +   S FFQ DF 
Sbjct: 2   ILSNEQRIRRHLTGNCACDYCKWPIESTLHILRDCSRARKVWDLFMNSTQASPFFQIDFH 61

Query: 486 I*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYF 307
             L  NL SK  H   +PW   F                            I +  KD+F
Sbjct: 62  PWLLNNLCSK-AHFVQIPWRIMFVFI-----------------------YLICTAAKDWF 97

Query: 306 TAIPNLGADNQVASSIEQFISWEPPD 229
            AI N    N  A+ ++  ++W PP+
Sbjct: 98  QAIIN---TNSGANKVQVLLAWVPPE 120



 Score = 47.8 bits (112), Expect(2) = 2e-14
 Identities = 31/77 (40%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
 Frame = -1

Query: 236 PPIHDWIKVNFDGDVIDGDLA-ATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGL 60
           PP    +K+N DG       A    GVLRD  G WI G+  N     V   ELWG+  GL
Sbjct: 118 PPEIGLVKLNIDGSCRGSTGAIGAGGVLRDHLGQWIGGFAVNLGQGEVLEAELWGLFFGL 177

Query: 59  KIA*EKVYR*LCIESDS 9
            +A EK    + IE DS
Sbjct: 178 NLAIEKKLHDIVIEMDS 194


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score = 60.1 bits (144), Expect(2) = 8e-14
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -1

Query: 251 LFLGSPPIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWG 75
           L   S P   W K+N DG       LA+  GVLRD +G W  G+  N   CS P+ ELWG
Sbjct: 143 LIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWG 202

Query: 74  ILQGLKIA*EKVYR*LCIESDSQL 3
           +  GL IA E+    L IE DS++
Sbjct: 203 VYYGLYIAWERRVTRLEIEVDSEI 226



 Score = 43.9 bits (102), Expect(2) = 8e-14
 Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
 Frame = -3

Query: 666 ILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFP 487
           ++TN ER   H     IC  C    +++ H+LR C    GIW  L       +FF     
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCXAMEGIWIRLVPAGKRREFFTQSLL 64

Query: 486 I*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYF 307
             L  NL  +        W   FA S+    +WR   +F   D    +  F++   ++  
Sbjct: 65  EWLFANLGDRR-KTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETS 123

Query: 306 TA---IPNLGADNQVASSIEQFISWEPPD 229
            A   +  L   +     +E+ I+W  P+
Sbjct: 124 MAHVIVRTLSGGH--GERVERLIAWSKPE 150


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score = 60.1 bits (144), Expect(2) = 8e-14
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -1

Query: 251 LFLGSPPIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWG 75
           L   S P   W K+N DG       LA+  GVLRD +G W  G+  N   CS P+ ELWG
Sbjct: 143 LIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWG 202

Query: 74  ILQGLKIA*EKVYR*LCIESDSQL 3
           +  GL IA E+    L IE DS++
Sbjct: 203 VYYGLYIAWERRVTRLEIEVDSEI 226



 Score = 43.9 bits (102), Expect(2) = 8e-14
 Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
 Frame = -3

Query: 666 ILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFP 487
           ++TN ER   H     IC  C    +++ H+LR C    GIW  L       +FF     
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLL 64

Query: 486 I*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYF 307
             L  NL  +        W   FA S+    +WR   +F   D    +  F++   ++  
Sbjct: 65  EWLFANLGDRR-KTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETS 123

Query: 306 TA---IPNLGADNQVASSIEQFISWEPPD 229
            A   +  L   +     +E+ I+W  P+
Sbjct: 124 MAHVIVRTLSGGH--GERVERLIAWSKPE 150


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score = 60.1 bits (144), Expect(2) = 8e-14
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
 Frame = -1

Query: 251 LFLGSPPIHDWIKVNFDGDVIDGD-LAATTGVLRDADGHWICGYVHNFKSCSVPMDELWG 75
           L   S P   W K+N DG       LA+  GVLRD +G W  G+  N   CS P+ ELWG
Sbjct: 143 LIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLRDEEGAWRGGFALNIGVCSAPLAELWG 202

Query: 74  ILQGLKIA*EKVYR*LCIESDSQL 3
           +  GL IA E+    L IE DS++
Sbjct: 203 VYYGLYIAWERRVTRLEIEVDSEI 226



 Score = 43.9 bits (102), Expect(2) = 8e-14
 Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 3/149 (2%)
 Frame = -3

Query: 666 ILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQDDFP 487
           ++TN ER   H     IC  C    +++ H+LR C    GIW  L       +FF     
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFFTQSLL 64

Query: 486 I*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRKDVFIRSYVKDYF 307
             L  NL  +        W   FA S+    +WR   +F   D    +  F++   ++  
Sbjct: 65  EWLFANLGDRR-KTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLKDLARETS 123

Query: 306 TA---IPNLGADNQVASSIEQFISWEPPD 229
            A   +  L   +     +E+ I+W  P+
Sbjct: 124 MAHVIVRTLSGGH--GERVERLIAWSKPE 150


>gb|EOY19161.1| Polynucleotidyl transferase, putative [Theobroma cacao]
          Length = 419

 Score = 51.2 bits (121), Expect(2) = 3e-13
 Identities = 29/78 (37%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = -1

Query: 233 PIHDWIKVNFDGDVI-DGDLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQGLK 57
           P + ++K+N DG       LAA+ GV+RD  G+WI G+            E WGI QGL 
Sbjct: 256 PKNGYVKLNVDGSAKGQPGLAASGGVIRDEYGNWIAGFCQKIGITFSLTAEPWGIYQGLT 315

Query: 56  IA*EKVYR*LCIESDSQL 3
           +   +  R  C+E DS L
Sbjct: 316 LCWNRGLRKFCVEIDSML 333



 Score = 50.8 bits (120), Expect(2) = 3e-13
 Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 4/161 (2%)
 Frame = -3

Query: 702 VRSFIWLVVCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLT 523
           VR  IW ++  ++ T+      H  +      C    E+L H LR C  ++ +W  L   
Sbjct: 104 VRLLIWRILHEALPTSEWLLKRHLRSTAFYFRCEAPVETLVHALRDCGKSKLLWLQLRPN 163

Query: 522 HYLSDFFQDDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFLGRK 343
            + SDFF ++    +  NL  K   V  +PW   F H++  +  WRN  +F       + 
Sbjct: 164 IHSSDFFSEELKPWVLKNLACKDP-VEGIPWAIIFIHAIWLLWFWRNMNLFD------KS 216

Query: 342 DVFIRSYVKDYFT----AIPNLGADNQVASSIEQFISWEPP 232
            ++  +  K  +T    A   LG +N      E  I+WE P
Sbjct: 217 FIWPANATKQVWTKAKEAWDTLGKENHRLKQ-EVLIAWEKP 256


>gb|EMJ11859.1| hypothetical protein PRUPE_ppa022173mg, partial [Prunus persica]
          Length = 343

 Score = 56.2 bits (134), Expect(2) = 1e-12
 Identities = 34/109 (31%), Positives = 50/109 (45%)
 Frame = -3

Query: 678 VCGSILTNVERCLHHFVTFGICSSCNNGAESLGHLLRYCSHARGIWQSLCLTHYLSDFFQ 499
           V G IL+N  R          CS     +E++ H+LR    A+ +W+++ L   +  FFQ
Sbjct: 120 VIGKILSNEHRYKRQLTLDPSCSIYGGSSETILHILREGPQAKEVWRAILLLLQVPHFFQ 179

Query: 498 DDFPI*LRTNLLSKGVHVALLPWVATFAHSL**I*RWRNERVFQGVDFL 352
            D    L  N+L+K      LPW   F  +   I +WRN  VF   + L
Sbjct: 180 HDLQPWLSCNILNKNKGCVGLPWNTIFGFTYWYIWKWRNHCVFNNEEAL 228



 Score = 43.9 bits (102), Expect(2) = 1e-12
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -1

Query: 236 PPIHDWIKVNFDG--DVIDGDLAATTGVLRDADGHWICGYVHNFKSCSVPMDELWGILQG 63
           PP   W K+N DG      G++  T GVLR+ +G W+ G+  +     V   E+WG+  G
Sbjct: 265 PPDVGWFKLNVDGYRRFSSGNIG-TGGVLRNCNGDWVEGFTTSLGQGQVLDAEIWGLFFG 323

Query: 62  LKIA 51
           LK+A
Sbjct: 324 LKLA 327