BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00030241
         (354 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]    70   2e-10
ref|XP_002267711.2| PREDICTED: general transcription factor IIH ...    70   3e-10
emb|CBI25875.3| unnamed protein product [Vitis vinifera]               70   3e-10
ref|XP_004134713.1| PREDICTED: general transcription factor IIH ...    69   5e-10
ref|NP_974564.1| transcription factor-related protein [Arabidops...    68   1e-09
dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]         68   1e-09
ref|NP_193435.2| transcription factor-related protein [Arabidops...    68   1e-09
ref|NP_001190745.1| transcription factor-related protein [Arabid...    68   1e-09
ref|XP_006414285.1| hypothetical protein EUTSA_v10025179mg [Eutr...    68   1e-09
ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arab...    66   6e-09
ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Caps...    65   7e-09
ref|XP_002305144.1| transcription factor-related family protein ...    65   9e-09
ref|XP_006495489.1| PREDICTED: RNA polymerase II transcription f...    64   2e-08
ref|XP_006467817.1| PREDICTED: general transcription factor IIH ...    64   2e-08
ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus commun...    64   3e-08
gb|EXB82782.1| General transcription factor IIH subunit 4 [Morus...    62   6e-08
ref|XP_006347058.1| PREDICTED: general transcription factor IIH ...    62   6e-08
ref|XP_004232855.1| PREDICTED: general transcription factor IIH ...    62   1e-07
ref|XP_003542754.1| PREDICTED: general transcription factor IIH ...    61   1e-07
ref|XP_003637396.1| General transcription factor IIH subunit [Me...    61   1e-07

>emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
          Length = 451

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MRLVVK+EIH HMREYLRR K
Sbjct: 410 FEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLRRSK 451


>ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
           vinifera]
          Length = 238

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MRLVVK+EIH HMREYLRR K
Sbjct: 197 FEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLRRPK 238


>emb|CBI25875.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score = 70.1 bits (170), Expect = 3e-10
 Identities = 34/42 (80%), Positives = 37/42 (88%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MRLVVK+EIH HMREYLRR K
Sbjct: 217 FEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLRRPK 258


>ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
           sativus]
          Length = 451

 Score = 69.3 bits (168), Expect = 5e-10
 Identities = 31/42 (73%), Positives = 38/42 (90%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACD+ARE  GLL+EDS+ +RLVVK++IH HMRE+LRRQK
Sbjct: 410 FEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQK 451


>ref|NP_974564.1| transcription factor-related protein [Arabidopsis thaliana]
           gi|332658438|gb|AEE83838.1| transcription factor-related
           protein [Arabidopsis thaliana]
          Length = 462

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE RGLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450


>dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
          Length = 452

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE RGLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450


>ref|NP_193435.2| transcription factor-related protein [Arabidopsis thaliana]
           gi|51969678|dbj|BAD43531.1| unnamed protein product
           [Arabidopsis thaliana] gi|115646777|gb|ABJ17114.1|
           At4g17020 [Arabidopsis thaliana]
           gi|332658439|gb|AEE83839.1| transcription factor-related
           protein [Arabidopsis thaliana]
          Length = 452

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE RGLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450


>ref|NP_001190745.1| transcription factor-related protein [Arabidopsis thaliana]
           gi|332658440|gb|AEE83840.1| transcription factor-related
           protein [Arabidopsis thaliana]
          Length = 482

 Score = 68.2 bits (165), Expect = 1e-09
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE RGLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450


>ref|XP_006414285.1| hypothetical protein EUTSA_v10025179mg [Eutrema salsugineum]
           gi|557115455|gb|ESQ55738.1| hypothetical protein
           EUTSA_v10025179mg [Eutrema salsugineum]
          Length = 452

 Score = 67.8 bits (164), Expect = 1e-09
 Identities = 32/41 (78%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE RGLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWRGLLWEDSKRMRLVVKSEVHNKMREFLHTQ 450


>ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
           lyrata] gi|297313927|gb|EFH44350.1| hypothetical protein
           ARALYDRAFT_493174 [Arabidopsis lyrata subsp. lyrata]
          Length = 452

 Score = 65.9 bits (159), Expect = 6e-09
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE  GLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMREFLHNQ 450


>ref|XP_006285003.1| hypothetical protein CARUB_v10006310mg [Capsella rubella]
           gi|482553708|gb|EOA17901.1| hypothetical protein
           CARUB_v10006310mg [Capsella rubella]
          Length = 452

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 31/41 (75%), Positives = 35/41 (85%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACDFARE  GLL+EDS+ MRLVVKSE+HN MRE+L  Q
Sbjct: 410 FEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMREFLHTQ 450


>ref|XP_002305144.1| transcription factor-related family protein [Populus trichocarpa]
           gi|222848108|gb|EEE85655.1| transcription factor-related
           family protein [Populus trichocarpa]
          Length = 449

 Score = 65.1 bits (157), Expect = 9e-09
 Identities = 31/42 (73%), Positives = 37/42 (88%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MR+VVK+EIH +MRE+LR QK
Sbjct: 408 FEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQK 449


>ref|XP_006495489.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
           partial [Citrus sinensis]
          Length = 80

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACD+AR++ GLL+ED + MRLVVK+EIH HMRE+LR Q
Sbjct: 39  FEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 79


>ref|XP_006467817.1| PREDICTED: general transcription factor IIH subunit 4-like [Citrus
           sinensis]
          Length = 450

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 29/41 (70%), Positives = 36/41 (87%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQ 231
           FEAACD+AR++ GLL+ED + MRLVVK+EIH HMRE+LR Q
Sbjct: 408 FEAACDYARDQSGLLWEDPKKMRLVVKAEIHMHMREFLRGQ 448


>ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
           gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative
           [Ricinus communis]
          Length = 451

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 30/42 (71%), Positives = 37/42 (88%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAAC+FAR+  GLL+EDS+ MR+VVK+EIH +MREYLR QK
Sbjct: 410 FEAACNFARDWNGLLWEDSKRMRMVVKAEIHLNMREYLRGQK 451


>gb|EXB82782.1| General transcription factor IIH subunit 4 [Morus notabilis]
          Length = 431

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 28/42 (66%), Positives = 34/42 (80%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FE AC+FARE  G L+EDS+ MRL+VK+EIH +MREYL R K
Sbjct: 390 FEGACEFAREGNGFLWEDSKKMRLIVKAEIHKNMREYLSRSK 431


>ref|XP_006347058.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           tuberosum]
          Length = 453

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 30/42 (71%), Positives = 36/42 (85%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MRLVVK++I   M+E+LRRQK
Sbjct: 411 FEAACDFAREYGGLLWEDSKRMRLVVKADILTEMKEFLRRQK 452


>ref|XP_004232855.1| PREDICTED: general transcription factor IIH subunit 4-like [Solanum
           lycopersicum]
          Length = 453

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 30/42 (71%), Positives = 36/42 (85%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FEAACDFARE  GLL+EDS+ MRLVVK++I   M+E+LRRQK
Sbjct: 411 FEAACDFAREYGGLLWEDSKRMRLVVKADILAEMKEFLRRQK 452


>ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like isoform
           X1 [Glycine max]
          Length = 451

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 27/42 (64%), Positives = 35/42 (83%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FE ACD ARE  GLL+EDS+ M +VVK+E+H ++R+YLRRQK
Sbjct: 410 FEGACDCAREWNGLLWEDSKKMHMVVKTEVHQYVRDYLRRQK 451


>ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
           gi|355503331|gb|AES84534.1| General transcription factor
           IIH subunit [Medicago truncatula]
          Length = 451

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 28/42 (66%), Positives = 35/42 (83%)
 Frame = -2

Query: 353 FEAACDFAREERGLLYEDSEGMRLVVKSEIHNHMREYLRRQK 228
           FE ACD ARE  GLL+EDS+ M LVVKSE+H ++R++LRRQK
Sbjct: 410 FEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQK 451