BLASTX nr result
ID: Rheum21_contig00029733
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029733
(258 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theob... 76 4e-12
gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theob... 74 2e-11
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao] 67 2e-09
gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptas... 66 4e-09
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ... 65 1e-08
gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theob... 65 1e-08
ref|XP_003548282.1| PREDICTED: TMV resistance protein N [Glycine... 63 3e-08
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta... 60 2e-07
gb|EOX93499.1| Ribonuclease H protein [Theobroma cacao] 58 1e-06
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta... 57 2e-06
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 56 4e-06
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A... 56 6e-06
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 56 6e-06
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 56 6e-06
ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein A... 55 9e-06
ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein A... 55 9e-06
gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [... 55 9e-06
ref|XP_002518907.1| conserved hypothetical protein [Ricinus comm... 55 9e-06
ref|XP_002533976.1| hypothetical protein RCOM_0370700 [Ricinus c... 55 9e-06
>gb|EOY25852.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 1011
Score = 76.3 bits (186), Expect = 4e-12
Identities = 35/83 (42%), Positives = 53/83 (63%), Gaps = 1/83 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIGG 71
RV FL H++ L NA RV+R MS+ ++CP C +EE+CLHV+RDC + LW +I
Sbjct: 724 RVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCPALETLWRRILP 783
Query: 70 RAALSSFFEGDMRSWLAENLKAK 2
++ ++ FF+ + WL+ NL K
Sbjct: 784 QSGINQFFQIPLIDWLSSNLNLK 806
>gb|EOY25817.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 874
Score = 73.9 bits (180), Expect = 2e-11
Identities = 35/83 (42%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIGG 71
RV FL H++ L NA RV+R MS+ ++CP C +EE+CLHV+RDC LW +I
Sbjct: 596 RVCLFLFFCLHKRILTNAERVRRKMSSDASCPHCYGVEETCLHVLRDCLASETLWRRILP 655
Query: 70 RAALSSFFEGDMRSWLAENLKAK 2
+ ++ FF+ + WL+ NL K
Sbjct: 656 ESGINQFFQIPLIDWLSSNLNLK 678
>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
Length = 660
Score = 67.4 bits (163), Expect = 2e-09
Identities = 34/82 (41%), Positives = 47/82 (57%), Gaps = 1/82 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSLE-ESCLHVVRDCEFVRNLWHKIG 74
QRVR FL H + L N R+ R ++T S CP+C +E E+ HV+RDC +LW KI
Sbjct: 335 QRVRTFLFQCLHGRLLTNRERLHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKII 394
Query: 73 GRAALSSFFEGDMRSWLAENLK 8
+ + FF +R WL NL+
Sbjct: 395 PQHEQNDFFTFPLREWLVSNLQ 416
>gb|EOY24339.1| RNA-directed DNA polymerase (Reverse transcriptase),
Polynucleotidyl transferase, Ribonuclease H fold-like
protein [Theobroma cacao]
Length = 616
Score = 66.2 bits (160), Expect = 4e-09
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSL-EESCLHVVRDCEFVRNLWHKIG 74
QR+R FL H K L N +R+MS+ + C CS+ +ES LH++RDC + +W K+G
Sbjct: 350 QRIRTFLMQCLHGKLLTNLECRRRNMSSSATCALCSVSDESVLHLLRDCPHSKEVWLKLG 409
Query: 73 GRAALSSFFEGDMRSWLAENLK 8
R +FF+ + WL NLK
Sbjct: 410 SRMGYGNFFDLLLSDWLLTNLK 431
>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
thaliana]
Length = 676
Score = 64.7 bits (156), Expect = 1e-08
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = -3
Query: 256 VQQRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHK 80
V +R R FL L ++ L NA RV+RHM+ CP C ES +HV+RDC + +W +
Sbjct: 352 VPERARIFLWLVGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMR 411
Query: 79 IGGRAALSSFFEGDMRSWLAENLKAK 2
+ FFE + W+ NLK +
Sbjct: 412 VVPVMEQRRFFETSLLEWMYGNLKER 437
>gb|EOY24207.1| Non-LTR retroelement reverse transcriptase [Theobroma cacao]
Length = 391
Score = 64.7 bits (156), Expect = 1e-08
Identities = 31/83 (37%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIGG 71
RV FL H++ L NA V+ MS+ ++CP +E+CLHV+RDC + LW I
Sbjct: 98 RVCLFLFFCLHKRILTNAEGVRHKMSSDASCPHYYGAKETCLHVLRDCPASKTLWRNILP 157
Query: 70 RAALSSFFEGDMRSWLAENLKAK 2
++ ++ FF+ + WL+ NL K
Sbjct: 158 QSGINQFFQTPLIDWLSSNLNLK 180
>ref|XP_003548282.1| PREDICTED: TMV resistance protein N [Glycine max]
Length = 1420
Score = 63.2 bits (152), Expect = 3e-08
Identities = 33/81 (40%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIG 74
+R+ L AA N R RH S S+CPRC LEE+CLH +RDC V W +
Sbjct: 1082 ERIINLLGNAADGALFTNPLRRYRHTSMDSSCPRCPELEETCLHALRDCPKVAAFWRSVL 1141
Query: 73 GRAALSSFFEGDMRSWLAENL 11
+ FF GD+ WL NL
Sbjct: 1142 PKKLAPKFFNGDVAVWLETNL 1162
>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 321
Score = 60.5 bits (145), Expect = 2e-07
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSL-EESCLHVVRDCEFVRNLWHKIG 74
+RVR FL L + + N R +RH+S C C EE+ LHV+RDC + +W ++
Sbjct: 4 ERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRLV 63
Query: 73 GRAALSSFFEGDMRSWLAENLKAK 2
R + FF + W+ +NL+ +
Sbjct: 64 PRDQIRQFFTASLLEWIYKNLRER 87
>gb|EOX93499.1| Ribonuclease H protein [Theobroma cacao]
Length = 369
Score = 57.8 bits (138), Expect = 1e-06
Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSLE-ESCLHVVRDCEFVRNLWHKIG 74
QRVR FL H + L N R++R ++ S P+C +E E+ HV+RDC +LW +I
Sbjct: 244 QRVRTFLFQCLHGRLLTNRERLRRRLTIDSLSPQCKMEDETMTHVLRDCMVATSLWVRII 303
Query: 73 GRAALSSFFEGDMRSWLAENLK 8
+ FF +R WL NL+
Sbjct: 304 PHHDYNVFFTLPLRKWLVCNLQ 325
>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 970
Score = 57.0 bits (136), Expect = 2e-06
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCS-LEESCLHVVRDCEFVRNLWHKIG 74
+RVR F+ L +H + N RV+RH+S + C C+ +ES LHV+RDC + +W ++
Sbjct: 654 ERVRVFIWLVSHMVIMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLL 713
Query: 73 GRAALSSFFEGDMRSWLAENL 11
+ + FF WL NL
Sbjct: 714 PQRRQNEFF--SQFEWLFTNL 732
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 56.2 bits (134), Expect = 4e-06
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSL-EESCLHVVRDCEFVRNLWHKIG 74
+RV+ FL L H+ + N R +RH+S C C +E+ +H++RDC + +W +I
Sbjct: 477 ERVKIFLWLGVHQVIMTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWTRII 536
Query: 73 GRAALSSFFEGDMRSWLAENL 11
R +FF + W+ +NL
Sbjct: 537 PRRKRGTFFTQTLLEWVYDNL 557
>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 411
Score = 55.8 bits (133), Expect = 6e-06
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIGG 71
+++ F+ H+K L N RV+R ST ++CP C + +E+ LH++RDC + +W+ I
Sbjct: 87 KLKTFMWYVLHQKILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILS 146
Query: 70 RAALSSFFEGDMRSWL 23
++++ F D W+
Sbjct: 147 PGSITNSFSLDWNGWI 162
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 1/83 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSLE-ESCLHVVRDCEFVRNLWHKIGG 71
R++ F+ LAAH + L N R + + CP C+ E E+ +HV+RDC +W ++
Sbjct: 475 RIQTFIWLAAHGRILTNYRRSKWGVGISPTCPCCAREDETVIHVLRDCVHSTQVWLRLIP 534
Query: 70 RAALSSFFEGDMRSWLAENLKAK 2
+++FF D R W+ NL K
Sbjct: 535 HNYITNFFSFDCREWVFNNLNKK 557
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 55.8 bits (133), Expect = 6e-06
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCS-LEESCLHVVRDCEFVRNLWHKIG 74
+RVR F+ L + + N RV+RH+S + C C+ EE+ LHV+RDC + +W ++
Sbjct: 913 ERVRVFIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLL 972
Query: 73 GRAALSSFFEGDMRSWLAENL 11
FF + WL N+
Sbjct: 973 PLRRHHEFFSQSLLEWLFTNM 993
>ref|XP_006469101.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 684
Score = 55.1 bits (131), Expect = 9e-06
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSLE-ESCLHVVRDCEFVRNLWHKIG 74
Q VR FL A H K +RH+ C RC E +HV+RDC+ + +W ++
Sbjct: 391 QAVRIFLWQALHAKLKTKEELSRRHIPISIGCERCGAPIEDVIHVLRDCQCIMRVWLRLV 450
Query: 73 GRAALSSFFEGDMRSWLAENLKAK 2
SFF+ +R W+ NL+ K
Sbjct: 451 PARNHLSFFQSTLRDWITANLQNK 474
>ref|XP_004289445.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 719
Score = 55.1 bits (131), Expect = 9e-06
Identities = 24/77 (31%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Frame = -3
Query: 247 RVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRC-SLEESCLHVVRDCEFVRNLWHKIGG 71
+++ F+ H+K L N RV+R ST ++CP C + +E+ LH++RDC + +W+ I
Sbjct: 574 KLKTFMWSVLHQKILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIWNSILR 633
Query: 70 RAALSSFFEGDMRSWLA 20
++++ F D W++
Sbjct: 634 PGSITNSFSLDWNGWIS 650
>gb|EMJ09149.1| hypothetical protein PRUPE_ppa017250mg, partial [Prunus persica]
Length = 219
Score = 55.1 bits (131), Expect = 9e-06
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = -3
Query: 211 KFLCNATRVQRHMSTFSACPRCSLEESC-LHVVRDCEFVRNLWHKIGGRAALSSFFEGDM 35
K L N RV+RH++ S+C C C LH++RDC VR +W R + F + D
Sbjct: 2 KILSNEQRVRRHLTLDSSCQCCGWPIECVLHILRDCFKVREVWFLFLKRGDAARFLQADF 61
Query: 34 RSWLAENLKAK 2
++WL NL +K
Sbjct: 62 KAWLFSNLCSK 72
>ref|XP_002518907.1| conserved hypothetical protein [Ricinus communis]
gi|223541894|gb|EEF43440.1| conserved hypothetical
protein [Ricinus communis]
Length = 210
Score = 55.1 bits (131), Expect = 9e-06
Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSL-EESCLHVVRDCEFVRNLWHKIG 74
Q+V L L AH+K N QR + + C C+ EE LH +RDC F + +W K+
Sbjct: 103 QKVHSTLWLLAHDKLSTNKLCSQRAIIPLAICMHCNQSEEDSLHAIRDCPFAKIIWQKLV 162
Query: 73 GRAALSSFFEGDMRSWLAENLKAK 2
+ FF D SWL++ L K
Sbjct: 163 KPDNQNGFFTLDTHSWLSKYLSQK 186
>ref|XP_002533976.1| hypothetical protein RCOM_0370700 [Ricinus communis]
gi|223526039|gb|EEF28407.1| hypothetical protein
RCOM_0370700 [Ricinus communis]
Length = 139
Score = 55.1 bits (131), Expect = 9e-06
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = -3
Query: 250 QRVRYFLHLAAHEKFLCNATRVQRHMSTFSACPRCSLE-ESCLHVVRDCEFVRNLWHKIG 74
+RV+YFL L H+K L N RV+ MS S+C +C+ + E+ H++RDC +W KI
Sbjct: 27 ERVQYFLWLCFHDKLLTNHERVRWRMSDQSSCAQCTGDVEAIHHILRDCPSSMAVWLKIL 86
Query: 73 GRAALSSFFEGDMRSWLAENL 11
+F + WL NL
Sbjct: 87 PMCHWQTFLSLSVEQWLLYNL 107