BLASTX nr result
ID: Rheum21_contig00029183
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029183
(324 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO61053.1| gag protein [Simian immunodeficiency virus] 65 1e-08
ref|XP_003112417.1| hypothetical protein CRE_30774 [Caenorhabdit... 64 2e-08
gb|AEY84732.1| gag protein [Small ruminant lentivirus] 64 2e-08
ref|XP_003102186.1| hypothetical protein CRE_06785 [Caenorhabdit... 62 6e-08
ref|XP_003116157.1| hypothetical protein CRE_08848 [Caenorhabdit... 62 6e-08
gb|AEY84739.1| gag protein [Small ruminant lentivirus] 62 1e-07
gb|ACV53612.1| gag polyprotein [Caprine arthritis encephalitis v... 62 1e-07
gb|AAR22577.1| gag protein [Small ruminant lentivirus] 61 1e-07
gb|AEY84731.1| gag protein [Small ruminant lentivirus] 61 2e-07
gb|ACX54406.1| gag protein [Caprine arthritis encephalitis virus] 61 2e-07
gb|AAX81905.1| gag protein [Caprine arthritis encephalitis virus] 61 2e-07
gb|AAR22642.1| gag protein [Small ruminant lentivirus] gi|385036... 61 2e-07
gb|EGT46872.1| hypothetical protein CAEBREN_15395 [Caenorhabditi... 60 2e-07
gb|AEB21184.1| gag polyprotein [Visna/maedi virus] 60 3e-07
ref|XP_003099782.1| hypothetical protein CRE_24081 [Caenorhabdit... 60 3e-07
gb|AAR22600.1| gag protein [Small ruminant lentivirus] 60 3e-07
gb|AAR22616.1| gag protein [Small ruminant lentivirus] 60 3e-07
gb|AAR02376.1| gag protein [Simian immunodeficiency virus] 60 3e-07
ref|XP_003091173.1| hypothetical protein CRE_15030 [Caenorhabdit... 60 4e-07
ref|XP_003109374.1| hypothetical protein CRE_08209 [Caenorhabdit... 60 4e-07
>gb|ABO61053.1| gag protein [Simian immunodeficiency virus]
Length = 518
Score = 64.7 bits (156), Expect = 1e-08
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)
Frame = +3
Query: 9 GGSTQRSDQGKQCFNCGTLGHKRNECPKER-KTCFGCGKEGHMQKFCRQKKQKGAESQQG 185
GG +R+ + CFNCG GH +CPK R + CF CG+EGH+ K CR KGA + G
Sbjct: 394 GGGPRRTPR---CFNCGQFGHIAKDCPKPRVRKCFKCGREGHLAKQCRTNSDKGAVNFLG 450
Query: 186 -SVSPNNRPRFTPVETPSPS 242
+ +PR PV + PS
Sbjct: 451 KGFGFHRKPRNFPVTSLMPS 470
>ref|XP_003112417.1| hypothetical protein CRE_30774 [Caenorhabditis remanei]
gi|308266985|gb|EFP10938.1| hypothetical protein
CRE_30774 [Caenorhabditis remanei]
Length = 901
Score = 64.3 bits (155), Expect = 2e-08
Identities = 24/56 (42%), Positives = 34/56 (60%)
Frame = +3
Query: 15 STQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
S + +G +C+NCG GH++ +CPK TCF C K+GHM FCR +K + Q
Sbjct: 278 SEDGNSEGGKCWNCGKRGHRKPDCPKPLTTCFDCQKKGHMSSFCRSRKDSSSRKTQ 333
>gb|AEY84732.1| gag protein [Small ruminant lentivirus]
Length = 442
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/64 (45%), Positives = 40/64 (62%)
Frame = +3
Query: 18 TQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSVSP 197
+QR G++C+NCG GH +C ++ C CGK+GHMQK CRQKKQ+G + V P
Sbjct: 378 SQRQGXGQKCYNCGKPGHLARQC-RQGIICHHCGKKGHMQKDCRQKKQQGNNRRGPRVVP 436
Query: 198 NNRP 209
+ P
Sbjct: 437 SAPP 440
>ref|XP_003102186.1| hypothetical protein CRE_06785 [Caenorhabditis remanei]
gi|308262341|gb|EFP06294.1| hypothetical protein
CRE_06785 [Caenorhabditis remanei]
Length = 900
Score = 62.4 bits (150), Expect = 6e-08
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = +3
Query: 15 STQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
S + +G +C+NCG GH + +CPK TCF C K+GHM FCR +K + Q
Sbjct: 278 SEDGNSEGGKCWNCGKRGHIKPDCPKPLTTCFDCQKKGHMSSFCRSRKDSSSRKTQ 333
>ref|XP_003116157.1| hypothetical protein CRE_08848 [Caenorhabditis remanei]
gi|308251101|gb|EFO95053.1| hypothetical protein
CRE_08848 [Caenorhabditis remanei]
Length = 901
Score = 62.4 bits (150), Expect = 6e-08
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +3
Query: 33 QGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
+G +C+NCG GHK+ +CPK TCF C K+GHM FCR + + Q
Sbjct: 284 EGGKCWNCGKRGHKKPDCPKPLTTCFDCQKKGHMSSFCRARNDSSSRKTQ 333
>gb|AEY84739.1| gag protein [Small ruminant lentivirus]
Length = 442
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/64 (43%), Positives = 39/64 (60%)
Frame = +3
Query: 18 TQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSVSP 197
T+ ++G++C+NCG GH +C + C CGK GHMQK CRQKKQ+G + V P
Sbjct: 378 TRDQEKGQKCYNCGKPGHLARQC-RRGIMCHYCGKRGHMQKDCRQKKQQGNSRRGPRVVP 436
Query: 198 NNRP 209
+ P
Sbjct: 437 SAPP 440
>gb|ACV53612.1| gag polyprotein [Caprine arthritis encephalitis virus]
Length = 442
Score = 61.6 bits (148), Expect = 1e-07
Identities = 31/71 (43%), Positives = 42/71 (59%)
Frame = +3
Query: 21 QRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSVSPN 200
++ + + C+NCG GH +C + KTC+ CGK+GHMQK CRQ+K K A QQG+
Sbjct: 374 RKEAKSQTCYNCGKPGHLARQC-RSGKTCYKCGKKGHMQKDCRQEKGK-ARQQQGNFL-- 429
Query: 201 NRPRFTPVETP 233
PR P P
Sbjct: 430 RGPRVVPSAPP 440
>gb|AAR22577.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 61.2 bits (147), Expect = 1e-07
Identities = 33/75 (44%), Positives = 42/75 (56%)
Frame = +3
Query: 9 GGSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGS 188
GGS+ RS ++C+NCG GH +C ++ C CGK GHMQK CRQKK + QQG
Sbjct: 170 GGSSGRS---QKCYNCGKEGHLARQC-RQGIICHHCGKRGHMQKDCRQKKGEKRTQQQG- 224
Query: 189 VSPNNRPRFTPVETP 233
+ PR P P
Sbjct: 225 -NSRRGPRVVPSAPP 238
>gb|AEY84731.1| gag protein [Small ruminant lentivirus]
Length = 440
Score = 60.8 bits (146), Expect = 2e-07
Identities = 30/65 (46%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 21 QRSDQGKQ--CFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSVS 194
+R +QG Q C+NCG GH +C ++ C CGK+GHMQK CRQKKQ+G + V
Sbjct: 375 ERKNQGGQQKCYNCGKPGHLARQC-RQGIICHHCGKKGHMQKDCRQKKQQGNNRRGPRVV 433
Query: 195 PNNRP 209
P+ P
Sbjct: 434 PSAPP 438
>gb|ACX54406.1| gag protein [Caprine arthritis encephalitis virus]
Length = 447
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +3
Query: 12 GSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSV 191
G +R Q ++C+NCG GH+ +C ++ C CGK GHMQK CR KK+ G + G
Sbjct: 377 GKGKRPGQSQRCYNCGKPGHQARQC-RQGIICHNCGKRGHMQKDCRGKKEMGRQQGNGRR 435
Query: 192 SPNNRPRFTPVE 227
P P+E
Sbjct: 436 GIRVVPSAPPME 447
>gb|AAX81905.1| gag protein [Caprine arthritis encephalitis virus]
Length = 447
Score = 60.8 bits (146), Expect = 2e-07
Identities = 28/72 (38%), Positives = 39/72 (54%)
Frame = +3
Query: 12 GSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSV 191
G +R Q ++C+NCG GH+ +C ++ C CGK GHMQK CR KK+ G + G
Sbjct: 377 GKGKRPGQSQRCYNCGKPGHQARQC-RQGIICHNCGKRGHMQKDCRGKKEMGRQQGNGRR 435
Query: 192 SPNNRPRFTPVE 227
P P+E
Sbjct: 436 GIRVVPSAPPME 447
>gb|AAR22642.1| gag protein [Small ruminant lentivirus] gi|38503696|gb|AAR22643.1|
gag protein [Small ruminant lentivirus]
Length = 240
Score = 60.8 bits (146), Expect = 2e-07
Identities = 32/75 (42%), Positives = 42/75 (56%)
Frame = +3
Query: 9 GGSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGS 188
GGS+ R G++C+NCG GH +C ++ C CGK GHMQK CRQK+ + QQG
Sbjct: 170 GGSSGR---GQKCYNCGKEGHLARQC-RQGIICHHCGKRGHMQKDCRQKRGEKRTQQQG- 224
Query: 189 VSPNNRPRFTPVETP 233
+ PR P P
Sbjct: 225 -NSRRGPRVVPSAPP 238
>gb|EGT46872.1| hypothetical protein CAEBREN_15395 [Caenorhabditis brenneri]
Length = 759
Score = 60.5 bits (145), Expect = 2e-07
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Frame = +3
Query: 6 HGGSTQRSDQGKQ------CFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKG 167
HGG + ++ C+NCG GHK+ +C ++ CF C K GHM KFC+ KKQ
Sbjct: 245 HGGKSSNKKPNREDSKEEACWNCGKSGHKKPDCTQKITKCFNCQKLGHMAKFCKSKKQNS 304
Query: 168 AESQQGSV 191
+ Q V
Sbjct: 305 TKRTQNVV 312
>gb|AEB21184.1| gag polyprotein [Visna/maedi virus]
Length = 442
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/58 (46%), Positives = 36/58 (62%)
Frame = +3
Query: 36 GKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGSVSPNNRP 209
G++C+NCG GH +C ++ C CGK GHMQK CRQKKQ+G + V P+ P
Sbjct: 384 GQKCYNCGKPGHLARQC-RQGIICHHCGKRGHMQKDCRQKKQQGNTKRGPRVVPSAPP 440
>ref|XP_003099782.1| hypothetical protein CRE_24081 [Caenorhabditis remanei]
gi|308266254|gb|EFP10207.1| hypothetical protein
CRE_24081 [Caenorhabditis remanei]
Length = 901
Score = 60.1 bits (144), Expect = 3e-07
Identities = 22/50 (44%), Positives = 31/50 (62%)
Frame = +3
Query: 33 QGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
+G +C+NCG GH++ +CPK TCF C K+G M FCR +K + Q
Sbjct: 284 EGGKCWNCGKRGHRKPDCPKPLTTCFDCQKKGDMSSFCRSRKDSSSRKTQ 333
>gb|AAR22600.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/75 (42%), Positives = 42/75 (56%)
Frame = +3
Query: 9 GGSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQGS 188
GGS+ RS ++C+NCG GH +C ++ C CGK GHMQK CRQK+ + QQG
Sbjct: 170 GGSSGRS---QKCYNCGKEGHLARQC-RQGIMCHHCGKRGHMQKDCRQKRGEKRTQQQG- 224
Query: 189 VSPNNRPRFTPVETP 233
+ PR P P
Sbjct: 225 -NSRRGPRVVPSAPP 238
>gb|AAR22616.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 60.1 bits (144), Expect = 3e-07
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +3
Query: 12 GSTQRSDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQ-KGAESQQGS 188
G R+ ++C+NCG LGH+ +C ++ C CGK GHMQK CR K+ K E QQG+
Sbjct: 169 GKATRNGPQQRCYNCGKLGHQARQC-RQGIICHNCGKRGHMQKDCRGKRNIKEKEKQQGN 227
Query: 189 VSPNNRPRFTPVETP 233
PR P P
Sbjct: 228 W--KRGPRVVPSAPP 240
>gb|AAR02376.1| gag protein [Simian immunodeficiency virus]
Length = 510
Score = 60.1 bits (144), Expect = 3e-07
Identities = 32/83 (38%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Frame = +3
Query: 12 GSTQRSDQGKQCFNCGTLGHKRNEC-PKERKTCFGCGKEGHMQKFCRQ--KKQKGAESQQ 182
G QR Q K CFNCG GH C +R+ C+ CG+ GH+ K C Q K+ KG
Sbjct: 387 GPPQRKGQPK-CFNCGKFGHMAKNCKAPQRRKCYNCGQPGHLAKDCPQPPKQNKGVNFLG 445
Query: 183 GSVSPNNRPRFTPVETPSPSTQT 251
P PR P+ + PS T
Sbjct: 446 NPFGPKKGPRNFPLTSVQPSAPT 468
>ref|XP_003091173.1| hypothetical protein CRE_15030 [Caenorhabditis remanei]
gi|308258127|gb|EFP02080.1| hypothetical protein
CRE_15030 [Caenorhabditis remanei]
Length = 412
Score = 59.7 bits (143), Expect = 4e-07
Identities = 24/52 (46%), Positives = 31/52 (59%)
Frame = +3
Query: 27 SDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
S QG++C+NCG GHK+ EC + CF C K GHM FC+ KK + Q
Sbjct: 282 SSQGERCWNCGKSGHKKPECFQPLTKCFKCQKSGHMSSFCKAKKSSSYKKTQ 333
>ref|XP_003109374.1| hypothetical protein CRE_08209 [Caenorhabditis remanei]
gi|308246787|gb|EFO90739.1| hypothetical protein
CRE_08209 [Caenorhabditis remanei]
Length = 1439
Score = 59.7 bits (143), Expect = 4e-07
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 27 SDQGKQCFNCGTLGHKRNECPKERKTCFGCGKEGHMQKFCRQKKQKGAESQQ 182
S QG++C+NCG GHK+ EC + CF C + GHM FC+ KK + Q
Sbjct: 282 SSQGERCWNCGKSGHKKPECSQPLTKCFKCQRSGHMSSFCKAKKSSSYKKTQ 333