BLASTX nr result
ID: Rheum21_contig00029072
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029072
(373 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004304909.1| PREDICTED: putative pentatricopeptide repeat... 124 1e-26
ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat... 118 7e-25
ref|XP_004231300.1| PREDICTED: putative pentatricopeptide repeat... 114 1e-23
ref|XP_006344789.1| PREDICTED: putative pentatricopeptide repeat... 112 4e-23
ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat... 101 1e-19
ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat... 101 1e-19
ref|XP_003591223.1| Pentatricopeptide repeat-containing protein ... 101 1e-19
ref|XP_002318941.2| pentatricopeptide repeat-containing family p... 100 2e-19
ref|XP_006433564.1| hypothetical protein CICLE_v10000630mg [Citr... 100 3e-19
gb|EXB53013.1| hypothetical protein L484_018897 [Morus notabilis] 96 6e-18
ref|XP_006472235.1| PREDICTED: putative pentatricopeptide repeat... 96 6e-18
ref|XP_004495637.1| PREDICTED: putative pentatricopeptide repeat... 94 1e-17
gb|EOY11702.1| Tetratricopeptide repeat (TPR)-like superfamily p... 92 5e-17
ref|XP_002891984.1| pentatricopeptide repeat-containing protein ... 92 7e-17
ref|XP_006301338.1| hypothetical protein CARUB_v10021748mg, part... 92 9e-17
ref|NP_176050.1| pentatricopeptide repeat protein PGN [Arabidops... 92 9e-17
gb|EMJ09704.1| hypothetical protein PRUPE_ppa026465mg, partial [... 91 1e-16
ref|XP_006392413.1| hypothetical protein EUTSA_v10024029mg [Eutr... 90 4e-16
emb|CBI39620.3| unnamed protein product [Vitis vinifera] 76 4e-12
ref|XP_002512535.1| pentatricopeptide repeat-containing protein,... 74 2e-11
>ref|XP_004304909.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Fragaria vesca subsp. vesca]
Length = 608
Score = 124 bits (311), Expect = 1e-26
Identities = 57/97 (58%), Positives = 73/97 (75%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
M+++KL+ T H PIP I+ NS+HC+ T+S P F +K P++LAT+LIKSYF++G
Sbjct: 1 MTSRKLLPRT--HFNPIPTIIRNSLHCSQEQPTTQSNPPFFSKGPNLLATDLIKSYFQKG 58
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
S+KEAR +FDEM ERDVV WT MIAGY SC HHS AW
Sbjct: 59 SLKEARKVFDEMSERDVVTWTAMIAGYTSCSHHSSAW 95
>ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570 [Vitis vinifera]
Length = 607
Score = 118 bits (296), Expect = 7e-25
Identities = 62/98 (63%), Positives = 70/98 (71%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS +KL++TT H PIP IV NSI N + T P F K PSVLAT LIKSYF +G
Sbjct: 1 MSTRKLLSTT--HFHPIPLIVRNSIQLVQNCT-TPPNPPFIPKGPSVLATTLIKSYFGKG 57
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAWM 3
I EAR LFDEMPERDVVAWT MIAGY SC++H+ AWM
Sbjct: 58 LIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWM 95
>ref|XP_004231300.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Solanum lycopersicum]
Length = 608
Score = 114 bits (285), Expect = 1e-23
Identities = 58/98 (59%), Positives = 70/98 (71%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
M+A+KLV+ T H IP + NS+ C + S P F K PS+LAT L+KSYFERG
Sbjct: 1 MNARKLVSQT--HCTQIPQTIKNSLLCAA-IDPPHSNPPFLPKPPSILATGLLKSYFERG 57
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAWM 3
I+EAR LFDEMPERDVVAWTTMI+GY SC+ H RAW+
Sbjct: 58 LIREARTLFDEMPERDVVAWTTMISGYTSCNLHGRAWV 95
>ref|XP_006344789.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Solanum tuberosum]
Length = 605
Score = 112 bits (281), Expect = 4e-23
Identities = 58/98 (59%), Positives = 69/98 (70%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
M+A+KLV+ T IP + NS+ C + S P F K PS+LAT L+KSYFERG
Sbjct: 1 MNARKLVSQTQ-----IPQTIKNSLLCAA-IDPPHSNPPFVPKPPSILATGLLKSYFERG 54
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAWM 3
I+EAR LFDEMPERDVVAWTTMI+GY SC+ H RAWM
Sbjct: 55 LIREARTLFDEMPERDVVAWTTMISGYTSCNLHGRAWM 92
>ref|XP_004163369.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 594
Score = 101 bits (251), Expect = 1e-19
Identities = 52/97 (53%), Positives = 66/97 (68%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS KL ++ H PIP IV NS+ N S +S P FT + PSV ATNLIKSYF++G
Sbjct: 1 MSVDKLASSP--HFHPIPLIVRNSLQWISN-STLQSNPPFTPEGPSVWATNLIKSYFDKG 57
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+EA LF+E+PERDVV WT MI G+ SC+H+ +AW
Sbjct: 58 LTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAW 94
>ref|XP_004135757.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cucumis sativus]
Length = 606
Score = 101 bits (251), Expect = 1e-19
Identities = 52/97 (53%), Positives = 66/97 (68%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS KL ++ H PIP IV NS+ N S +S P FT + PSV ATNLIKSYF++G
Sbjct: 1 MSVDKLASSP--HFHPIPLIVRNSLQWISN-STLQSNPPFTPEGPSVWATNLIKSYFDKG 57
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+EA LF+E+PERDVV WT MI G+ SC+H+ +AW
Sbjct: 58 LTREACNLFNEIPERDVVTWTAMIVGFTSCNHYHQAW 94
>ref|XP_003591223.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480271|gb|AES61474.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 606
Score = 101 bits (251), Expect = 1e-19
Identities = 50/95 (52%), Positives = 66/95 (69%)
Frame = -3
Query: 290 AKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERGSI 111
++KL+++T + RPIP V NS+ C N + F K + L T+LIKSYF++GS
Sbjct: 6 SRKLLSST--NFRPIPFSVQNSLRCIQNDTP------FNPKDLTGLTTDLIKSYFDKGSF 57
Query: 110 KEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+EA LFDEMP RDV+AWT+MI GY SC+HHSRAW
Sbjct: 58 EEAHTLFDEMPHRDVIAWTSMITGYTSCNHHSRAW 92
>ref|XP_002318941.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550324647|gb|EEE94864.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 610
Score = 100 bits (250), Expect = 2e-19
Identities = 49/97 (50%), Positives = 65/97 (67%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS K+L++ H P P ++ N + N +S F AK S+LAT+L+KSYFERG
Sbjct: 1 MSTKRLLSANNFH--PFPPMMKNYLQWAQNTPTQKSGTPFNAKGTSILATDLLKSYFERG 58
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+AR LFDEMPERDVVAWTTMI+GY C+ +++AW
Sbjct: 59 LTSQARNLFDEMPERDVVAWTTMISGYTHCNEYTQAW 95
>ref|XP_006433564.1| hypothetical protein CICLE_v10000630mg [Citrus clementina]
gi|557535686|gb|ESR46804.1| hypothetical protein
CICLE_v10000630mg [Citrus clementina]
Length = 609
Score = 99.8 bits (247), Expect = 3e-19
Identities = 52/98 (53%), Positives = 66/98 (67%), Gaps = 1/98 (1%)
Frame = -3
Query: 296 MSAKKLVTTTAA-HLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFER 120
M K+L++ A H IP I+ S+ S+ +S P K PS+LATNLIKSYF+
Sbjct: 1 MRTKRLLSYAATFHCHKIPPIIKQSLQSVKK-SSIQSDPPLIPKGPSILATNLIKSYFDE 59
Query: 119 GSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
G I+EAR LFDEMPERDVV+WT MIAGY S + H++AW
Sbjct: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQAW 97
>gb|EXB53013.1| hypothetical protein L484_018897 [Morus notabilis]
Length = 582
Score = 95.5 bits (236), Expect = 6e-18
Identities = 42/65 (64%), Positives = 51/65 (78%)
Frame = -3
Query: 197 TRSLPTFTAKSPSVLATNLIKSYFERGSIKEARVLFDEMPERDVVAWTTMIAGYASCDHH 18
T+S P F K+PSVLATNLIKSY E+G +KEAR +FDEMP +DVVAWT M+ GY SC+ H
Sbjct: 11 TQSNPPFLPKAPSVLATNLIKSYLEKGLVKEARSVFDEMPHKDVVAWTAMVEGYTSCNDH 70
Query: 17 SRAWM 3
AW+
Sbjct: 71 GHAWL 75
>ref|XP_006472235.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Citrus sinensis]
Length = 609
Score = 95.5 bits (236), Expect = 6e-18
Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 1/97 (1%)
Frame = -3
Query: 296 MSAKKLVTTTAA-HLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFER 120
M K+L++ A H IP I+ S+ S+ +S P K PS+LATNLIKSYF+
Sbjct: 1 MRTKRLLSYAATFHCHKIPPIIKQSLQSVKK-SSIQSDPPLIPKGPSILATNLIKSYFDE 59
Query: 119 GSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRA 9
G I+EAR LFDEMPERDVV+WT MIAGY S + H++A
Sbjct: 60 GLIEEARTLFDEMPERDVVSWTVMIAGYTSFNCHNQA 96
>ref|XP_004495637.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g56570-like [Cicer arietinum]
Length = 607
Score = 94.4 bits (233), Expect = 1e-17
Identities = 48/94 (51%), Positives = 61/94 (64%)
Frame = -3
Query: 287 KKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERGSIK 108
+KL++ T P+P V NS+ C S F+ K + + T+LIKSYF+ GSI+
Sbjct: 6 RKLLSPT--DFLPLPLSVQNSLRCIELNSP------FSPKGITGITTDLIKSYFDEGSIE 57
Query: 107 EARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
EA LFDEMP RDV+AWT MI GY SCDHH+RAW
Sbjct: 58 EAHSLFDEMPHRDVIAWTAMITGYTSCDHHNRAW 91
>gb|EOY11702.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 605
Score = 92.4 bits (228), Expect = 5e-17
Identities = 48/92 (52%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Frame = -3
Query: 269 TAAHLRPIPAIVLNSIHCTHNLSATRSLPTFT----AKSPSVLATNLIKSYFERGSIKEA 102
TA + P I NS+ + S +P AK P++LATN+IKS+FE+G I +A
Sbjct: 3 TARKIAPF-TIKHNSLQWVQSHSTWTKIPYTNLSKGAKGPAILATNVIKSFFEKGLINDA 61
Query: 101 RVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
RVLFDEMP+RDVV WT MIAGY SCDH AW
Sbjct: 62 RVLFDEMPDRDVVMWTAMIAGYTSCDHQVHAW 93
>ref|XP_002891984.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297337826|gb|EFH68243.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 611
Score = 92.0 bits (227), Expect = 7e-17
Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 2/99 (2%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIH--CTHNLSATRSLPTFTAKSPSVLATNLIKSYFE 123
MS K + A +PIP V +S+ C + T S P + K +LATNLI SYFE
Sbjct: 1 MSITKFARSNA--FKPIPNFVRSSLRNACVESSQNTES-PPYKPKKHHILATNLIVSYFE 57
Query: 122 RGSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+G ++EAR LFDEMPERDVVAWT MI GYAS +++S AW
Sbjct: 58 KGLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAW 96
>ref|XP_006301338.1| hypothetical protein CARUB_v10021748mg, partial [Capsella rubella]
gi|482570048|gb|EOA34236.1| hypothetical protein
CARUB_v10021748mg, partial [Capsella rubella]
Length = 614
Score = 91.7 bits (226), Expect = 9e-17
Identities = 51/98 (52%), Positives = 64/98 (65%), Gaps = 2/98 (2%)
Frame = -3
Query: 293 SAKKLVTTTAAHLRPIPAIVLNSIH--CTHNLSATRSLPTFTAKSPSVLATNLIKSYFER 120
S KL + A +PIP V +S+ C + T S P + K +LATNLI SYFE+
Sbjct: 5 SITKLARSNA--FKPIPNFVRSSLRNACVESSQNTES-PPYRPKKHHILATNLIVSYFEK 61
Query: 119 GSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
G ++EAR LFDEMPERDVVAWT MI GYAS +++S AW
Sbjct: 62 GLVEEARSLFDEMPERDVVAWTAMITGYASSNYNSCAW 99
>ref|NP_176050.1| pentatricopeptide repeat protein PGN [Arabidopsis thaliana]
gi|75173051|sp|Q9FXA9.1|PPR83_ARATH RecName:
Full=Putative pentatricopeptide repeat-containing
protein At1g56570 gi|9954755|gb|AAG09106.1|AC009323_17
Hypothetical protein [Arabidopsis thaliana]
gi|332195289|gb|AEE33410.1| pentatricopeptide repeat
protein PGN [Arabidopsis thaliana]
Length = 611
Score = 91.7 bits (226), Expect = 9e-17
Identities = 49/98 (50%), Positives = 64/98 (65%), Gaps = 1/98 (1%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSI-HCTHNLSATRSLPTFTAKSPSVLATNLIKSYFER 120
MS KL + A +PIP V +S+ + S P + K +LATNLI SYFE+
Sbjct: 1 MSITKLARSNA--FKPIPNFVRSSLRNAGVESSQNTEYPPYKPKKHHILATNLIVSYFEK 58
Query: 119 GSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
G ++EAR LFDEMP+RDVVAWT MI GYAS ++++RAW
Sbjct: 59 GLVEEARSLFDEMPDRDVVAWTAMITGYASSNYNARAW 96
>gb|EMJ09704.1| hypothetical protein PRUPE_ppa026465mg, partial [Prunus persica]
Length = 588
Score = 91.3 bits (225), Expect = 1e-16
Identities = 44/60 (73%), Positives = 46/60 (76%)
Frame = -3
Query: 185 PTFTAKSPSVLATNLIKSYFERGSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
P K V+ATNLIKS FERG IKEAR LFDEMPERDVVAWT +IAGY SC HHS AW
Sbjct: 20 PLAHLKGFCVIATNLIKSCFERGLIKEARKLFDEMPERDVVAWTAIIAGYTSCSHHSHAW 79
>ref|XP_006392413.1| hypothetical protein EUTSA_v10024029mg [Eutrema salsugineum]
gi|557088919|gb|ESQ29699.1| hypothetical protein
EUTSA_v10024029mg [Eutrema salsugineum]
Length = 610
Score = 89.7 bits (221), Expect = 4e-16
Identities = 48/97 (49%), Positives = 63/97 (64%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS KLV + +PIP V +S+ S + + K +LATNLI SYF++G
Sbjct: 1 MSITKLVRSNG--FKPIPNFVRSSLRNACVESNQNTDAPYRPKKHHILATNLILSYFKKG 58
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
++EAR LFDEMPERDVVAWT MI GYAS ++++RAW
Sbjct: 59 LVEEARSLFDEMPERDVVAWTAMITGYASSEYNARAW 95
>emb|CBI39620.3| unnamed protein product [Vitis vinifera]
Length = 591
Score = 76.3 bits (186), Expect = 4e-12
Identities = 47/98 (47%), Positives = 55/98 (56%)
Frame = -3
Query: 296 MSAKKLVTTTAAHLRPIPAIVLNSIHCTHNLSATRSLPTFTAKSPSVLATNLIKSYFERG 117
MS +KL++TT H PIP IV NSI N + T P F K PSVLAT LIKSYF +G
Sbjct: 1 MSTRKLLSTT--HFHPIPLIVRNSIQLVQNCT-TPPNPPFIPKGPSVLATTLIKSYFGKG 57
Query: 116 SIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAWM 3
I EA MIAGY SC++H+ AWM
Sbjct: 58 LIGEA----------------LMIAGYTSCNNHTHAWM 79
>ref|XP_002512535.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548496|gb|EEF49987.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 387
Score = 73.9 bits (180), Expect = 2e-11
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = -3
Query: 140 IKSYFERGSIKEARVLFDEMPERDVVAWTTMIAGYASCDHHSRAW 6
+KSYFE+G ++EAR +FDEM ERDVVAWT MIAGYASC+ H+ AW
Sbjct: 1 MKSYFEKGLVREARNVFDEMLERDVVAWTVMIAGYASCNEHAYAW 45