BLASTX nr result
ID: Rheum21_contig00029026
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00029026
(300 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptas... 57 4e-16
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ... 57 6e-16
gb|AAD37021.1| putative non-LTR retrolelement reverse transcript... 56 1e-15
gb|AAC63844.1| putative non-LTR retroelement reverse transcripta... 55 2e-15
emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|73210... 54 4e-15
gb|EMJ21003.1| hypothetical protein PRUPE_ppa026469mg, partial [... 54 2e-14
gb|EMJ13914.1| hypothetical protein PRUPE_ppa018769mg, partial [... 57 3e-13
ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296... 52 6e-13
ref|XP_004301578.1| PREDICTED: uncharacterized protein LOC101313... 52 7e-13
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas] 49 1e-11
ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein A... 52 1e-11
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas] 49 2e-11
dbj|BAE79382.1| unnamed protein product [Ipomoea batatas] 49 2e-11
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 53 2e-10
ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein A... 50 4e-10
gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus pe... 54 7e-10
gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at t... 46 2e-09
gb|EOY18655.1| Uncharacterized protein TCM_043150 [Theobroma cacao] 45 3e-09
ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein A... 47 7e-09
gb|EMJ07680.1| hypothetical protein PRUPE_ppa018770mg [Prunus pe... 54 1e-08
>gb|ABD28505.2| RNA-directed DNA polymerase (Reverse transcriptase);
Polynucleotidyl transferase, Ribonuclease H fold
[Medicago truncatula]
Length = 729
Score = 56.6 bits (135), Expect(2) = 4e-16
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +3
Query: 6 GVQGPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G GP +SH+ FADDL+LFAEASIEQ V CL C++SG K
Sbjct: 100 GRYGPPISHLLFADDLLLFAEASIEQAHCVLHCLDMFCQSSGQK 143
Score = 53.5 bits (127), Expect(2) = 4e-16
Identities = 24/50 (48%), Positives = 36/50 (72%)
Frame = +1
Query: 151 DDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
+ LGKYLG N++ R S G + +I +++ KL+GWK + LS+AGR TL+K
Sbjct: 175 NSLGKYLGANITPGRTSRGHFNHIINKIQNKLSGWKQQCLSLAGRITLSK 224
>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
Length = 799
Score = 57.0 bits (136), Expect(2) = 6e-16
Identities = 27/41 (65%), Positives = 32/41 (78%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
GP LSH+ FADDL+LFAEAS+ Q+RVV+ L K C ASG K
Sbjct: 128 GPLLSHICFADDLILFAEASVAQIRVVRKVLEKFCIASGQK 168
Score = 52.4 bits (124), Expect(2) = 6e-16
Identities = 27/54 (50%), Positives = 36/54 (66%)
Frame = +1
Query: 139 IPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
I T +LGKYLG+ + + RI+ + I RV+ +LAGWK R LS+AGR TL K
Sbjct: 196 IKSTKELGKYLGMPVLQKRINKDTFGEILLRVSSRLAGWKGRMLSLAGRLTLTK 249
>gb|AAD37021.1| putative non-LTR retrolelement reverse transcriptase [Arabidopsis
thaliana]
Length = 732
Score = 55.8 bits (133), Expect(2) = 1e-15
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
GP LSH+ FADDL+LFAEAS+ Q+RV++ L + C ASG K
Sbjct: 198 GPKLSHICFADDLILFAEASVAQIRVIRRVLERFCVASGQK 238
Score = 52.4 bits (124), Expect(2) = 1e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 139 IPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
I T +LGKYLG+ + + RI+ + I +++ +LAGWK R+LS+AGR TL K
Sbjct: 266 ISSTRELGKYLGMPVLQRRINKDTFGDILEKLTTRLAGWKGRFLSLAGRVTLTK 319
>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
thaliana]
Length = 1231
Score = 55.1 bits (131), Expect(2) = 2e-15
Identities = 24/41 (58%), Positives = 32/41 (78%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G LSH+ FADDL+LFAEAS+ Q+R+++ L + CEASG K
Sbjct: 536 GSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQK 576
Score = 52.8 bits (125), Expect(2) = 2e-15
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 139 IPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
I T +LGKYLG+ + + R++ + + +RV+ +LAGWK R LS+AGR TL K
Sbjct: 604 IGCTKELGKYLGMPILQKRMNKETFGEVLERVSARLAGWKGRSLSLAGRITLTK 657
>emb|CAB78008.1| putative protein [Arabidopsis thaliana] gi|7321072|emb|CAB82119.1|
putative protein [Arabidopsis thaliana]
Length = 947
Score = 53.9 bits (128), Expect(2) = 4e-15
Identities = 24/41 (58%), Positives = 31/41 (75%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
GP +SH+ FADDL+LFAEAS+ Q+RV++ L C ASG K
Sbjct: 350 GPKISHICFADDLILFAEASVSQIRVIRRILETFCIASGQK 390
Score = 52.8 bits (125), Expect(2) = 4e-15
Identities = 26/54 (48%), Positives = 36/54 (66%)
Frame = +1
Query: 139 IPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
I T +LGKYLG+ + + RI+ + + +RV+ +LAGWK R LS AGR TL K
Sbjct: 418 IKSTRELGKYLGMPILQRRINKDTFGEVLERVSSRLAGWKGRSLSFAGRLTLTK 471
>gb|EMJ21003.1| hypothetical protein PRUPE_ppa026469mg, partial [Prunus persica]
Length = 212
Score = 53.9 bits (128), Expect(2) = 2e-14
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTL 294
PLTD+LGKYLG+++ SR++ Y+ + ++ +LA WK++ LS AGR TL
Sbjct: 81 PLTDNLGKYLGMHILHSRVTRSTYSSLLSKIHCRLANWKSKLLSSAGRATL 131
Score = 50.8 bits (120), Expect(2) = 2e-14
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
GP +SH+F DDL+LF EAS ++ R++K CL C+ASG
Sbjct: 12 GPIVSHLFLVDDLILFTEASTQRARMMKGCLDLFCQASG 50
>gb|EMJ13914.1| hypothetical protein PRUPE_ppa018769mg, partial [Prunus persica]
Length = 387
Score = 57.0 bits (136), Expect(2) = 3e-13
Identities = 24/39 (61%), Positives = 31/39 (79%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
GP +SH+FFADDLVLFAEAS +Q ++++ CL K C SG
Sbjct: 48 GPCVSHLFFADDLVLFAEASTKQAQIMRDCLEKFCSVSG 86
Score = 43.5 bits (101), Expect(2) = 3e-13
Identities = 20/51 (39%), Positives = 33/51 (64%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTL 294
PLT +LG YLG+ + +++ Y + ++V L WK+++LS+AGR TL
Sbjct: 117 PLTANLGNYLGMPILHNKVCKDTYGGLVNKVQNCLTLWKSKHLSLAGRATL 167
>ref|XP_004305437.1| PREDICTED: uncharacterized protein LOC101296313 [Fragaria vesca
subsp. vesca]
Length = 449
Score = 52.0 bits (123), Expect(2) = 6e-13
Identities = 26/53 (49%), Positives = 35/53 (66%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
PLT DLGKYLG+ L R++ YA + D+V K+L WK++ LS GR TL +
Sbjct: 311 PLTCDLGKYLGMPLIYDRVNKCTYAGLFDKVQKRLFSWKSKVLSFVGRLTLVQ 363
Score = 47.4 bits (111), Expect(2) = 6e-13
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEAS 128
GP + H+FFADDL+LF EAS +Q ++K CL C S
Sbjct: 242 GPKILHLFFADDLILFVEASSQQTSLLKTCLDNFCALS 279
>ref|XP_004301578.1| PREDICTED: uncharacterized protein LOC101313223 [Fragaria vesca
subsp. vesca]
Length = 543
Score = 52.0 bits (123), Expect(2) = 7e-13
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTL 294
PLT DLGKYLG+ L SR++ Y I +V +L+ WK++ L+MAGR TL
Sbjct: 317 PLTSDLGKYLGMPLIHSRVNKHTYDAIFYKVQSRLSSWKSKVLNMAGRLTL 367
Score = 47.0 bits (110), Expect(2) = 7e-13
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
GP +SH+FF DDL+LFAEA+ Q +K CL C SG
Sbjct: 248 GPRISHLFFVDDLMLFAEATEHQAYGLKTCLDNFCAISG 286
>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
Length = 1898
Score = 49.3 bits (116), Expect(2) = 1e-11
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 136 RIPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
++P+ + LG YLGI + K R+S + + D++ KL+ WKA L+MAGR L +
Sbjct: 1276 QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQ 1330
Score = 45.8 bits (107), Expect(2) = 1e-11
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G +SH+FFADDL+LF EAS Q +++ CL +ASG K
Sbjct: 1209 GTGISHLFFADDLMLFGEASEHQAQIMFDCLDSFSDASGLK 1249
>ref|XP_006480844.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus
sinensis]
Length = 768
Score = 52.4 bits (124), Expect(2) = 1e-11
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = +1
Query: 145 LTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
+T DLGKYLG+ L SR+S Y I D+ +KL GW A LS+AGR TL +
Sbjct: 173 VTKDLGKYLGMPLLHSRVSQQTYQGILDKTDQKLLGWAASQLSLAGRITLTQ 224
Score = 42.7 bits (99), Expect(2) = 1e-11
Identities = 20/41 (48%), Positives = 27/41 (65%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G LSH+FF DDL+LFAEA+ Q + + L C +SG+K
Sbjct: 103 GTPLSHLFFTDDLLLFAEATSGQAQCINSVLGDFCLSSGTK 143
>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 49.3 bits (116), Expect(2) = 2e-11
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 136 RIPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
++P+ + LG YLGI + K R+S + + D++ KL+ WKA L+MAGR L +
Sbjct: 744 QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQ 798
Score = 45.1 bits (105), Expect(2) = 2e-11
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G +SH+FFADDL+LF EAS Q +++ CL ASG K
Sbjct: 677 GTGISHLFFADDLMLFGEASEHQAQIMFDCLDSFSNASGLK 717
>dbj|BAE79382.1| unnamed protein product [Ipomoea batatas]
Length = 1366
Score = 49.3 bits (116), Expect(2) = 2e-11
Identities = 22/55 (40%), Positives = 35/55 (63%)
Frame = +1
Query: 136 RIPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
++P+ + LG YLGI + K R+S + + D++ KL+ WKA L+MAGR L +
Sbjct: 744 QVPVAESLGTYLGIPMLKERVSRNTFNAVIDKMRTKLSSWKASSLNMAGRRVLVQ 798
Score = 45.1 bits (105), Expect(2) = 2e-11
Identities = 21/41 (51%), Positives = 27/41 (65%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
G +SH+FFADDL+LF EAS Q +++ CL ASG K
Sbjct: 677 GTGISHLFFADDLMLFGEASEHQAQIMFDCLDSFSNASGLK 717
>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 52.8 bits (125), Expect(2) = 2e-10
Identities = 24/51 (47%), Positives = 37/51 (72%)
Frame = +1
Query: 148 TDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
T +LGKYLG+ + + RI+ + + +RV+ +L+GWK+R LS+AGR TL K
Sbjct: 542 TRELGKYLGMPVLQKRINKDTFGEVLERVSSRLSGWKSRSLSLAGRITLTK 592
Score = 38.1 bits (87), Expect(2) = 2e-10
Identities = 16/23 (69%), Positives = 20/23 (86%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQ 83
GP +SH+ FADDL+LFAEAS+ Q
Sbjct: 488 GPKVSHVCFADDLILFAEASVAQ 510
>ref|XP_004306191.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 755
Score = 49.7 bits (117), Expect(2) = 4e-10
Identities = 24/49 (48%), Positives = 30/49 (61%)
Frame = +1
Query: 154 DLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
DLGKYLG+ SR V YI+D + KK+ GWK LS AG++ L K
Sbjct: 218 DLGKYLGLPTIWSRSKVSALGYIRDTILKKIQGWKQGILSPAGKEILIK 266
Score = 40.0 bits (92), Expect(2) = 4e-10
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +3
Query: 3 LGVQGPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
+G GP +SH+FFADD + F A++ V+ LH C A G
Sbjct: 141 IGDLGPKVSHLFFADDSLSFLRATVFNCEVLSDVLHHYCSAFG 183
>gb|EMJ14411.1| hypothetical protein PRUPE_ppb013620mg [Prunus persica]
Length = 993
Score = 53.5 bits (127), Expect(2) = 7e-10
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
GP++SH+FFADDL LFAEA+ Q RV+K CL C ASG
Sbjct: 887 GPSVSHLFFADDLALFAEATPCQARVMKNCLDLFCSASG 925
Score = 35.4 bits (80), Expect(2) = 7e-10
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLA 249
P+T++LGKYLG+ L SR++ Y + D+V +LA
Sbjct: 956 PITENLGKYLGLPLLHSRVTKVTYNGLLDKVQSRLA 991
>gb|EOY02376.1| LINE-type retrotransposon LIb DNA, Insertion at the S11 site-like
protein [Theobroma cacao]
Length = 620
Score = 45.8 bits (107), Expect(2) = 2e-09
Identities = 21/39 (53%), Positives = 26/39 (66%)
Frame = +3
Query: 3 LGVQGPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLC 119
LG GP L+++FF DDL+L AEAS QM V+K L C
Sbjct: 246 LGKHGPPLTYLFFMDDLILLAEASESQMEVIKGVLEDFC 284
Score = 41.6 bits (96), Expect(2) = 2e-09
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +1
Query: 148 TDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
+D +GKY+G+ L R + Y + D+V +L WKA LS GR TL +
Sbjct: 321 SDSMGKYIGVPLLHGRKTAHIYKSLIDKVRSRLCAWKASSLSSTGRLTLVQ 371
>gb|EOY18655.1| Uncharacterized protein TCM_043150 [Theobroma cacao]
Length = 522
Score = 44.7 bits (104), Expect(2) = 3e-09
Identities = 22/57 (38%), Positives = 34/57 (59%)
Frame = +1
Query: 130 AARIPLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
AA LT+D GKYLG + R+ Y+ + ++ +KL W ++LSMAGR +L +
Sbjct: 234 AAYTSLTNDFGKYLGTPMLHGRVQRTTYSDLCSKLLRKLDQWSNKFLSMAGRVSLVQ 290
Score = 42.0 bits (97), Expect(2) = 3e-09
Identities = 19/41 (46%), Positives = 26/41 (63%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASGSK 137
GP LSH+ FADD+ LF A+ Q++V+ +HK C A K
Sbjct: 169 GPTLSHVCFADDIKLFGTATQNQLQVMMRDIHKFCSALDQK 209
>ref|XP_004301440.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
vesca subsp. vesca]
Length = 786
Score = 47.0 bits (110), Expect(2) = 7e-09
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +1
Query: 151 DDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTLAK 300
+D GKYLG+ R YI DRV +KL GWK R LS AG++ L K
Sbjct: 184 EDPGKYLGLPTLWGRSKKEAVGYIVDRVQRKLVGWKQRSLSWAGKEILIK 233
Score = 38.5 bits (88), Expect(2) = 7e-09
Identities = 17/40 (42%), Positives = 26/40 (65%)
Frame = +3
Query: 12 QGPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
+GP LSHMFFADD + F +A++ + + + C+ASG
Sbjct: 111 RGPTLSHMFFADDALFFLKATLGNVCRLMEIFKEYCKASG 150
>gb|EMJ07680.1| hypothetical protein PRUPE_ppa018770mg [Prunus persica]
Length = 790
Score = 53.9 bits (128), Expect(2) = 1e-08
Identities = 26/51 (50%), Positives = 35/51 (68%)
Frame = +1
Query: 142 PLTDDLGKYLGINLSKSRISVGQYAYIKDRVAKKLAGWKARYLSMAGRDTL 294
PLT+DLG YLG+ L S I Y+ + D+V +LA WK++ LS+AGR TL
Sbjct: 614 PLTNDLGNYLGMPLLHSTIGKHTYSSLVDKVHNRLASWKSKLLSLAGRATL 664
Score = 30.8 bits (68), Expect(2) = 1e-08
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 15 GPALSHMFFADDLVLFAEASIEQMRVVKFCLHKLCEASG 131
GPA+SH+FFA+DL CL+ C ASG
Sbjct: 578 GPAISHLFFANDL---------------SCLYLFCSASG 601