BLASTX nr result
ID: Rheum21_contig00028451
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00028451
(274 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761... 122 5e-26
ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756... 122 5e-26
gb|ABO21746.1| gag-pol polyprotein [Panicum virgatum] 116 3e-24
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 114 2e-23
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 114 2e-23
gb|ABO21743.1| gag-pol polyprotein [Panicum virgatum] 113 2e-23
gb|ABO21747.1| gag-pol polyprotein [Panicum virgatum] 113 3e-23
emb|CAE01890.2| OSJNBa0035O13.13 [Oryza sativa Japonica Group] 110 3e-22
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 110 3e-22
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 110 3e-22
emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group] 110 3e-22
gb|AAX95158.1| retrotransposon protein, putative, Ty3-gypsy sub-... 109 3e-22
gb|AAX96752.1| retrotransposon protein, putative, Ty3-gypsy sub-... 109 3e-22
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 109 4e-22
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 108 6e-22
gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sati... 108 1e-21
dbj|BAH80072.1| putative unclassified retrotransposon protein [O... 108 1e-21
emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group] 108 1e-21
gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subc... 108 1e-21
gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-... 108 1e-21
>ref|XP_004980451.1| PREDICTED: uncharacterized protein LOC101761720, partial [Setaria
italica]
Length = 738
Score = 122 bits (306), Expect = 5e-26
Identities = 59/89 (66%), Positives = 67/89 (75%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD+ K+ AI+EWPT TT T +RSFLGLA FYRRFVRDFSSIAAPLHELT K W
Sbjct: 236 VDSSKIDAIREWPTPTTVTQIRSFLGLAGFYRRFVRDFSSIAAPLHELTKKDVPFAWSDS 295
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E+AF+ LK L APLLQLPDF+K FE+
Sbjct: 296 QEVAFSTLKDKLTNAPLLQLPDFTKVFEL 324
>ref|XP_004980445.1| PREDICTED: uncharacterized protein LOC101756049, partial [Setaria
italica]
Length = 763
Score = 122 bits (306), Expect = 5e-26
Identities = 59/89 (66%), Positives = 67/89 (75%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD+ K+ AI+EWPT TT T +RSFLGLA FYRRFVRDFSSIAAPLHELT K W
Sbjct: 261 VDSSKIDAIREWPTPTTVTQIRSFLGLAGFYRRFVRDFSSIAAPLHELTKKDVPFAWSDS 320
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E+AF+ LK L APLLQLPDF+K FE+
Sbjct: 321 QEVAFSTLKDKLTNAPLLQLPDFTKVFEL 349
>gb|ABO21746.1| gag-pol polyprotein [Panicum virgatum]
Length = 276
Score = 116 bits (291), Expect = 3e-24
Identities = 58/89 (65%), Positives = 64/89 (71%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD K+ AI+ WPT T T VRSFLGLA FYRRFVRDFS+IAAPLHELT KG W P
Sbjct: 131 VDGAKIDAIRSWPTPQTITQVRSFLGLAGFYRRFVRDFSTIAAPLHELTKKGVSFHWGPA 190
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
+ AF+ LK L APLLQLPDF K FE+
Sbjct: 191 QDQAFDTLKERLTSAPLLQLPDFGKTFEL 219
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 114 bits (284), Expect = 2e-23
Identities = 56/89 (62%), Positives = 64/89 (71%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD EK+ AIKEWP + T VRSF GLA FYRRFVRDFS+IAAPL E+ K + W +
Sbjct: 911 VDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKE 970
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
+ AFN LK LC APLLQLPDFSK FE+
Sbjct: 971 QDDAFNLLKDKLCSAPLLQLPDFSKSFEV 999
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 114 bits (284), Expect = 2e-23
Identities = 56/89 (62%), Positives = 64/89 (71%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD EK+ AIKEWP + T VRSF GLA FYRRFVRDFS+IAAPL E+ K + W +
Sbjct: 911 VDDEKIKAIKEWPKPNSVTEVRSFHGLASFYRRFVRDFSTIAAPLTEVIKKDKVFTWGKE 970
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
+ AFN LK LC APLLQLPDFSK FE+
Sbjct: 971 QDDAFNLLKDKLCSAPLLQLPDFSKSFEV 999
>gb|ABO21743.1| gag-pol polyprotein [Panicum virgatum]
Length = 172
Score = 113 bits (283), Expect = 2e-23
Identities = 57/89 (64%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD K+ AI+ WPT T T VRSFLGL FYRRFVRDFS+IAA LHELT KG W P
Sbjct: 27 VDGAKIDAIRSWPTPQTITQVRSFLGLEGFYRRFVRDFSTIAALLHELTKKGVSFHWGPS 86
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
+ AF+ LKT L APLLQLPDF K FE+
Sbjct: 87 QDQAFDTLKTRLTSAPLLQLPDFGKTFEL 115
>gb|ABO21747.1| gag-pol polyprotein [Panicum virgatum]
Length = 220
Score = 113 bits (282), Expect = 3e-23
Identities = 56/89 (62%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD K+ AIK WP T T VRSFLGLA FYRRFV+DFS+IAAPLHELT KG + W
Sbjct: 75 VDETKIEAIKSWPVPQTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKKGVVFRWGKT 134
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
HE +F LK L APLLQLP+F K FE+
Sbjct: 135 HEESFCTLKDKLTHAPLLQLPNFGKTFEL 163
>emb|CAE01890.2| OSJNBa0035O13.13 [Oryza sativa Japonica Group]
Length = 1021
Score = 110 bits (274), Expect = 3e-22
Identities = 55/89 (61%), Positives = 61/89 (68%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYRRFV+DFS+IAAPLHELT + W
Sbjct: 678 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAT 737
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
AF+ LK L APLLQLPDF+K FE+
Sbjct: 738 QRNAFDTLKDKLTHAPLLQLPDFNKTFEL 766
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 110 bits (274), Expect = 3e-22
Identities = 55/89 (61%), Positives = 61/89 (68%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYRRFV+DFS+IAAPLHELT + W
Sbjct: 956 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 1015
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
AF+ LK L APLLQLPDF+K FE+
Sbjct: 1016 QRNAFDTLKDKLTHAPLLQLPDFNKTFEL 1044
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 110 bits (274), Expect = 3e-22
Identities = 55/89 (61%), Positives = 61/89 (68%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYRRFV+DFS+IAAPLHELT + W
Sbjct: 956 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 1015
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
AF+ LK L APLLQLPDF+K FE+
Sbjct: 1016 QRNAFDTLKDKLTHAPLLQLPDFNKTFEL 1044
>emb|CAD39843.2| OSJNBb0072N21.12 [Oryza sativa Japonica Group]
Length = 1239
Score = 110 bits (274), Expect = 3e-22
Identities = 55/89 (61%), Positives = 61/89 (68%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYRRFV+DFS+IAAPLHELT + W
Sbjct: 734 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 793
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
AF+ LK L APLLQLPDF+K FE+
Sbjct: 794 QRNAFDTLKDKLTHAPLLQLPDFNKTFEL 822
>gb|AAX95158.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77549568|gb|ABA92365.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1182
Score = 109 bits (273), Expect = 3e-22
Identities = 53/89 (59%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD K+ AI+ WP T T VRSFLGLA FYRRFV+DFS+ AAPL+ELT KG + W
Sbjct: 751 VDESKIEAIRSWPVPQTITQVRSFLGLAGFYRRFVKDFSTFAAPLNELTKKGVVFHWGKT 810
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
HE +F+ LK L APLLQLP+F K FE+
Sbjct: 811 HEKSFDTLKDKLTHAPLLQLPNFGKTFEL 839
>gb|AAX96752.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group]
Length = 1222
Score = 109 bits (273), Expect = 3e-22
Identities = 53/89 (59%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD K+ AI+ WP T T VRSFLGLA FYRRFV+DFS+ AAPL+ELT KG + W
Sbjct: 751 VDESKIEAIRSWPVPQTITQVRSFLGLAGFYRRFVKDFSTFAAPLNELTKKGVVFHWGKT 810
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
HE +F+ LK L APLLQLP+F K FE+
Sbjct: 811 HEKSFDTLKDKLTHAPLLQLPNFGKTFEL 839
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 109 bits (272), Expect = 4e-22
Identities = 55/88 (62%), Positives = 60/88 (68%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYRRFV+DFS+IAAPLHELT + W
Sbjct: 956 VDQAKVEAIHNWPVPTTITQVRSFLGLAGFYRRFVKDFSTIAAPLHELTKRNVTFTWAAA 1015
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFE 6
AF+ LK L APLLQLPDF+K FE
Sbjct: 1016 QRNAFDTLKDKLTHAPLLQLPDFNKTFE 1043
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 108 bits (271), Expect = 6e-22
Identities = 57/89 (64%), Positives = 62/89 (69%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP T T VRSFLGLA FYRRFV+DFS+IAAPL+ELT KG W
Sbjct: 931 VDQAKVEAIHGWPMPKTITQVRSFLGLAGFYRRFVKDFSTIAAPLNELTKKGVHFSWGKV 990
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E AFN LK L APLLQLPDF+K FE+
Sbjct: 991 QEHAFNVLKDKLTHAPLLQLPDFNKTFEL 1019
>gb|AAX95495.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
Length = 1739
Score = 108 bits (269), Expect = 1e-21
Identities = 55/89 (61%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI+ WPT T + VRSFLGLA FYRRFV+DFS+IAAPL+ LT KG W
Sbjct: 1261 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTS 1320
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E AF+ LK L APLLQLPDF+K FE+
Sbjct: 1321 QENAFHMLKDKLTHAPLLQLPDFNKTFEL 1349
>dbj|BAH80072.1| putative unclassified retrotransposon protein [Oryza sativa Indica
Group]
Length = 848
Score = 108 bits (269), Expect = 1e-21
Identities = 55/89 (61%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI+ WPT T + VRSFLGLA FYRRFV+DFS+IAAPL+ LT KG W
Sbjct: 292 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTS 351
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E AF+ LK L APLLQLPDF+K FE+
Sbjct: 352 QENAFHMLKDKLTHAPLLQLPDFNKTFEL 380
>emb|CAH66606.1| H0211A12.9 [Oryza sativa Indica Group]
Length = 1667
Score = 108 bits (269), Expect = 1e-21
Identities = 55/89 (61%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI+ WPT T + VRSFLGLA FYRRFV+DFS+IAAPL+ LT KG W
Sbjct: 851 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTS 910
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E AF+ LK L APLLQLPDF+K FE+
Sbjct: 911 QENAFHMLKDKLTHAPLLQLPDFNKTFEL 939
>gb|ABF97027.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 889
Score = 108 bits (269), Expect = 1e-21
Identities = 54/89 (60%), Positives = 60/89 (67%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI WP TT T VRSFLGLA FYR FV+DFS+IAAPLHELT + W
Sbjct: 269 VDQAKVEAIHSWPVPTTITQVRSFLGLAGFYRHFVKDFSTIAAPLHELTKRNVTFTWAAA 328
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
AF+ LK L APLLQLPDF+K FE+
Sbjct: 329 QRNAFDTLKDKLTHAPLLQLPDFNKTFEL 357
>gb|AAX96717.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|108864301|gb|ABA93040.2|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1748
Score = 108 bits (269), Expect = 1e-21
Identities = 55/89 (61%), Positives = 63/89 (70%)
Frame = -3
Query: 269 VDAEKVMAIKEWPTLTTTTMVRSFLGLADFYRRFVRDFSSIAAPLHELTNKGTIVVWQPK 90
VD KV AI+ WPT T + VRSFLGLA FYRRFV+DFS+IAAPL+ LT KG W
Sbjct: 1270 VDQAKVEAIQSWPTPKTVSQVRSFLGLAGFYRRFVQDFSTIAAPLNALTKKGVPFTWGTS 1329
Query: 89 HEIAFNALKTALCQAPLLQLPDFSKHFEI 3
E AF+ LK L APLLQLPDF+K FE+
Sbjct: 1330 QENAFHMLKDKLTHAPLLQLPDFNKTFEL 1358