BLASTX nr result
ID: Rheum21_contig00027929
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00027929
(277 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subc... 103 2e-20
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 103 2e-20
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group... 103 2e-20
gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-... 103 2e-20
ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g... 103 3e-20
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi... 103 3e-20
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 103 3e-20
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc... 100 2e-19
gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Ho... 100 3e-19
gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subc... 100 3e-19
gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryz... 100 3e-19
gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor] 100 3e-19
emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera] 100 3e-19
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop... 99 6e-19
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni... 99 8e-19
emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group] 98 1e-18
emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera] 97 2e-18
emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera] 97 2e-18
emb|CAN74921.1| hypothetical protein VITISV_022027 [Vitis vinifera] 97 2e-18
emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera] 97 2e-18
>gb|ABF94964.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 846
Score = 103 bits (258), Expect = 2e-20
Identities = 53/93 (56%), Positives = 66/93 (70%), Gaps = 1/93 (1%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYL-NCTKDMSLHLCNDNSM 177
V LQ L+LTR DI F VNKVCQF+H P+T HW VKRIL YL +CTK + L LC SM
Sbjct: 632 VGALQYLTLTRPDIAFPVNKVCQFLHAPTTIHWVAVKRILRYLKHCTK-LGLKLCKSKSM 690
Query: 178 SLSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SA+S A+W G+ DRRST + V+LG+ L+S
Sbjct: 691 LVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVS 723
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 103 bits (258), Expect = 2e-20
Identities = 53/93 (56%), Positives = 65/93 (69%), Gaps = 1/93 (1%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYL-NCTKDMSLHLCNDNSM 177
V LQ L+LTR DI F VNKVCQF+H P+T HW VKRIL YL CTK + L LC SM
Sbjct: 1233 VGALQYLTLTRPDIAFPVNKVCQFLHAPTTVHWAAVKRILRYLKQCTK-LGLKLCKSKSM 1291
Query: 178 SLSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SA+S A+W G+ DRRST + V+LG+ L+S
Sbjct: 1292 LVSAYSDADWAGSLDDRRSTGGFAVFLGDNLVS 1324
>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
gi|108708884|gb|ABF96679.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1437
Score = 103 bits (258), Expect = 2e-20
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTRLDI F VNKVCQF+H P+T HW VKRIL Y+ + L +C +SM
Sbjct: 1217 VGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMI 1276
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S +S A+W G DRRST + VYLG+ L+S
Sbjct: 1277 VSGYSDADWAGCLDDRRSTGGFAVYLGDNLVS 1308
>gb|AAP20859.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 352
Score = 103 bits (258), Expect = 2e-20
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTRLDI F VNKVCQF+H P+T HW VKRIL Y+ + L +C +SM
Sbjct: 132 VGALQYLTLTRLDIAFSVNKVCQFLHNPTTEHWAAVKRILRYIKQCTGLGLRICKSSSMI 191
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S +S A+W G DRRST + VYLG+ L+S
Sbjct: 192 VSGYSDADWAGCLDDRRSTGGFAVYLGDNLVS 223
>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
Japonica Group]
Length = 821
Score = 103 bits (256), Expect = 3e-20
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+TTHW VKRIL Y+ T D L C + S+
Sbjct: 601 VGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLL 660
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S FS A+W G+ DRRST + V+LG L+S
Sbjct: 661 VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVS 692
>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
Length = 391
Score = 103 bits (256), Expect = 3e-20
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+TTHW VKRIL Y+ T D L C + S+
Sbjct: 171 VGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLL 230
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S FS A+W G+ DRRST + V+LG L+S
Sbjct: 231 VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVS 262
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 103 bits (256), Expect = 3e-20
Identities = 49/92 (53%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+TTHW VKRIL Y+ T D L C + S+
Sbjct: 1179 VGALQYLTLTRPDISFSINKVCQFLHAPTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLL 1238
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S FS A+W G+ DRRST + V+LG L+S
Sbjct: 1239 VSGFSDADWAGSPDDRRSTGGFAVFLGPNLVS 1270
>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 100 bits (249), Expect = 2e-19
Identities = 49/92 (53%), Positives = 61/92 (66%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR D+ F+VNKVCQF+H P+T HW VKRIL Y+ T + L +SM
Sbjct: 720 VGALQYLTLTRSDLSFLVNKVCQFLHSPTTVHWSAVKRILRYIKGTVEFGLRFGKSDSML 779
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SAFS A+W G DRRST + V+LG LIS
Sbjct: 780 ISAFSDADWAGCSDDRRSTGGFAVFLGPNLIS 811
>gb|AAM18766.1|AC099325_22 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
Length = 1150
Score = 100 bits (248), Expect = 3e-19
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+ THW VKRI+ YL T M L + SM
Sbjct: 850 VGALQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSML 909
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
++AFS A+W G DRRSTS + V+LG+ LIS
Sbjct: 910 VNAFSDADWAGCVDDRRSTSGFAVFLGSNLIS 941
>gb|ABB47033.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 100 bits (248), Expect = 3e-19
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+ THW VKRI+ YL T M L + SM
Sbjct: 812 VGALQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSML 871
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
++AFS A+W G DRRSTS + V+LG+ LIS
Sbjct: 872 VNAFSDADWAGCVDDRRSTSGFAVFLGSNLIS 903
>gb|AAL86510.1|AC099040_14 putative retrotransposon protein [Oryza sativa Japonica Group]
Length = 1139
Score = 100 bits (248), Expect = 3e-19
Identities = 50/92 (54%), Positives = 62/92 (67%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F +NKVCQF+H P+ THW VKRI+ YL T M L + SM
Sbjct: 818 VGALQYLTLTRPDIAFSINKVCQFLHSPTLTHWSAVKRIIRYLRGTVGMGLKIQKSQSML 877
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
++AFS A+W G DRRSTS + V+LG+ LIS
Sbjct: 878 VNAFSDADWAGCVDDRRSTSGFAVFLGSNLIS 909
>gb|AAD22155.1|AF061282_8 polyprotein [Sorghum bicolor]
Length = 1012
Score = 100 bits (248), Expect = 3e-19
Identities = 49/92 (53%), Positives = 60/92 (65%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F VNKVCQF+H P+T HW VKRIL Y+ T + + SM
Sbjct: 798 VGALQYLTLTRPDISFAVNKVCQFLHSPTTIHWSAVKRILRYIKGTTKLGIKFSKSESML 857
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SAF+ A+W G DRRST + V+LGN LIS
Sbjct: 858 VSAFADADWAGCVDDRRSTGGFAVFLGNNLIS 889
>emb|CAN71108.1| hypothetical protein VITISV_001478 [Vitis vinifera]
Length = 1354
Score = 99.8 bits (247), Expect = 3e-19
Identities = 55/99 (55%), Positives = 65/99 (65%), Gaps = 7/99 (7%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSM- 177
V LQ LSLTR DI F VN++ QFMHQP++ HW +VKRIL YL T D L L D+S+
Sbjct: 1129 VGSLQYLSLTRPDISFAVNRMAQFMHQPTSEHWVLVKRILRYLCGTLDKGLLLYRDSSIP 1188
Query: 178 ------SLSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
SL AFS A+W GN+ D STSAY VYLG L+S
Sbjct: 1189 LHGFSDSLHAFSDADWAGNKDDYSSTSAYLVYLGRNLVS 1227
>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
Length = 1313
Score = 99.0 bits (245), Expect = 6e-19
Identities = 47/92 (51%), Positives = 63/92 (68%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F VNKVCQF+H P+T HW VKRIL Y+ ++ LH+ +S
Sbjct: 1099 VGALQYLTLTRPDIAFSVNKVCQFLHAPTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTL 1158
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SAFS A+W G+ DR+ST + V+LG+ L+S
Sbjct: 1159 VSAFSDADWAGSVDDRKSTGGFAVFLGSNLVS 1190
>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|108706314|gb|ABF94109.1| retrotransposon protein,
putative, Ty1-copia subclass [Oryza sativa Japonica
Group]
Length = 1247
Score = 98.6 bits (244), Expect = 8e-19
Identities = 49/92 (53%), Positives = 61/92 (66%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F VNKVCQF+H P+T HW VKRIL YL + L L SM
Sbjct: 1033 VGALQYLTLTRPDIAFPVNKVCQFLHAPTTHHWAAVKRILRYLKQCTRLGLKLSKSRSML 1092
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+SA+S A+W G+ DRRST + V+LG+ L+S
Sbjct: 1093 VSAYSDADWAGSLDDRRSTGGFAVFLGDNLVS 1124
>emb|CAH67640.1| H0102C09.1 [Oryza sativa Indica Group]
Length = 1825
Score = 97.8 bits (242), Expect = 1e-18
Identities = 48/92 (52%), Positives = 60/92 (65%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ L+LTR DI F VNKVCQ++H P+T HW VKRIL YL T + L + +S+
Sbjct: 1118 VGALQYLTLTRPDISFSVNKVCQYLHSPTTVHWAAVKRILRYLQQTSGLGLKIRKSSSLL 1177
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
+S FS A+W G DRRST + VYLG L+S
Sbjct: 1178 VSGFSDADWAGCLDDRRSTGGFAVYLGPNLVS 1209
>emb|CAN79148.1| hypothetical protein VITISV_004343 [Vitis vinifera]
Length = 1334
Score = 97.1 bits (240), Expect = 2e-18
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ ++LTR DI F VNK CQFM +PS HW VKRIL YL T + LH SM
Sbjct: 1151 VGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASME 1210
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
L +S A+W DRRSTS YCV+LG+ LIS
Sbjct: 1211 LQGYSDADWASCPDDRRSTSGYCVFLGSNLIS 1242
>emb|CAN73924.1| hypothetical protein VITISV_041509 [Vitis vinifera]
Length = 1434
Score = 97.1 bits (240), Expect = 2e-18
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ ++LTR DI F VNK CQFM +PS HW VKRIL YL T + LH SM
Sbjct: 1151 VGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASME 1210
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
L +S A+W DRRSTS YCV+LG+ LIS
Sbjct: 1211 LQGYSDADWASCPDDRRSTSGYCVFLGSNLIS 1242
>emb|CAN74921.1| hypothetical protein VITISV_022027 [Vitis vinifera]
Length = 551
Score = 97.1 bits (240), Expect = 2e-18
Identities = 49/92 (53%), Positives = 57/92 (61%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ ++LTR DI F VNK CQFM +PS HW VK IL YL T + LH SM
Sbjct: 263 VGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWLAVKSILRYLKGTISLGLHFQPSTSME 322
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
L +S A+W DRRSTS YCV+LG+ LIS
Sbjct: 323 LQGYSDADWASCLNDRRSTSGYCVFLGSNLIS 354
>emb|CAN63683.1| hypothetical protein VITISV_030301 [Vitis vinifera]
Length = 1272
Score = 97.1 bits (240), Expect = 2e-18
Identities = 50/92 (54%), Positives = 58/92 (63%)
Frame = +1
Query: 1 VRGLQSLSLTRLDIGFVVNKVCQFMHQPSTTHW*VVKRILPYLNCTKDMSLHLCNDNSMS 180
V LQ ++LTR DI F VNK CQFM +PS HW VKRIL YL T + LH SM
Sbjct: 1020 VGALQYVTLTRPDIAFAVNKACQFMAKPSDVHWMAVKRILRYLKGTIHLGLHFQPAASME 1079
Query: 181 LSAFSGANWTGNRTDRRSTSAYCVYLGNTLIS 276
L +S A+W DRRSTS YCV+LG+ LIS
Sbjct: 1080 LQGYSDADWASCPDDRRSTSGYCVFLGSNLIS 1111