BLASTX nr result
ID: Rheum21_contig00027827
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00027827
(713 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera] 141 3e-50
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 113 6e-50
emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera] 111 3e-46
gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis tha... 109 4e-42
dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis t... 109 4e-42
emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis th... 109 4e-42
emb|CAN75292.1| hypothetical protein VITISV_014745 [Vitis vinifera] 102 1e-41
ref|XP_006365584.1| PREDICTED: uncharacterized protein LOC102598... 91 1e-40
gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymera... 94 1e-40
gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsi... 98 5e-39
gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|3860380... 98 5e-39
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 94 7e-39
emb|CAN60732.1| hypothetical protein VITISV_010209 [Vitis vinifera] 89 7e-39
gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsi... 96 2e-38
gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar] 81 3e-37
emb|CAN63534.1| hypothetical protein VITISV_001206 [Vitis vinifera] 81 3e-37
emb|CAN71748.1| hypothetical protein VITISV_019194 [Vitis vinifera] 81 4e-37
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 89 4e-37
gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsi... 91 6e-37
emb|CAN82626.1| hypothetical protein VITISV_044103 [Vitis vinifera] 84 1e-36
>emb|CAN71595.1| hypothetical protein VITISV_010143 [Vitis vinifera]
Length = 1523
Score = 141 bits (356), Expect(2) = 3e-50
Identities = 69/93 (74%), Positives = 77/93 (82%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
QLDVNN FLN DL EDVYM+LP GF KGE RVCKLHKSLYG+KQAS Q FLKLS++LK
Sbjct: 1075 QLDVNNAFLNGDLYEDVYMQLPPGFGRKGEHRVCKLHKSLYGLKQASRQWFLKLSSALKA 1134
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
AGF+QSW DYSLF R +G FT LL+YVDDVI+
Sbjct: 1135 AGFKQSWSDYSLFXRNTQGRFTTLLVYVDDVIL 1167
Score = 84.3 bits (207), Expect(2) = 3e-50
Identities = 40/65 (61%), Positives = 51/65 (78%)
Frame = -1
Query: 581 PTKQTPHRLQMGIQIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLI 402
P+ + P + +IKY PDG I+RYKA LVAKG+SQ+EG+DYR FAPVAKLTTVRVL+
Sbjct: 1004 PSHKKPIGCKWVYKIKYNPDGTIERYKARLVAKGFSQVEGIDYRETFAPVAKLTTVRVLL 1063
Query: 401 SMAVV 387
S+A +
Sbjct: 1064 SLASI 1068
Score = 68.9 bits (167), Expect = 2e-09
Identities = 32/69 (46%), Positives = 42/69 (60%)
Frame = -2
Query: 685 PHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNINPME*SND 506
P A WR++M EI+A++ N TWSLVPLP +K+PIGCKWV+K+ NP
Sbjct: 969 PRSFSQAVLDSRWREAMNTEIQALQANKTWSLVPLPSHKKPIGCKWVYKIKYNPDGTIER 1028
Query: 505 TKHTLLQKG 479
K L+ KG
Sbjct: 1029 YKARLVAKG 1037
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 113 bits (282), Expect(3) = 6e-50
Identities = 55/93 (59%), Positives = 70/93 (75%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DVNN FL+ DL E+VYMKLP GF G+ +VCKL KSLYG+KQAS Q F KL+T+LK+
Sbjct: 913 QMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKLTTALKE 972
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF+QS DYSLF + + LL+YVDD+I+
Sbjct: 973 YGFQQSLADYSLFTYRRGNIVMNLLVYVDDLIL 1005
Score = 66.6 bits (161), Expect(3) = 6e-50
Identities = 29/51 (56%), Positives = 42/51 (82%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAV 390
+IKY DG I+RYKA LVA+G++QIEG+DY+ F+PVAK+T+VR +++ V
Sbjct: 855 KIKYNADGSIERYKARLVAQGFTQIEGIDYQEXFSPVAKMTSVRCFLAVXV 905
Score = 65.9 bits (159), Expect(3) = 6e-50
Identities = 26/53 (49%), Positives = 36/53 (67%)
Frame = -2
Query: 685 PHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
P + A WR++MAKEI+A+E N TW +V LPP K+ IGCKW++K+ N
Sbjct: 807 PRTYKEAVXDNRWREAMAKEIEALETNQTWKVVDLPPEKKAIGCKWIYKIKYN 859
>emb|CAN83990.1| hypothetical protein VITISV_018454 [Vitis vinifera]
Length = 1243
Score = 111 bits (277), Expect(3) = 3e-46
Identities = 59/97 (60%), Positives = 70/97 (72%), Gaps = 4/97 (4%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEM----RVCKLHKSLYGVKQASHQLFLKLST 220
QLDVNN FL+ DL E+VYMKLP G++ KGE VC LHKSLYG+KQAS Q F K ST
Sbjct: 856 QLDVNNAFLHGDLNEEVYMKLPPGYNRKGESLPSNAVCLLHKSLYGLKQASRQWFSKFST 915
Query: 219 SLKQAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
++ GF QS D+SLFI+ G+F LL+YVDDVII
Sbjct: 916 AIMGLGFSQSPSDHSLFIKNVDGLFIALLVYVDDVII 952
Score = 67.4 bits (163), Expect(3) = 3e-46
Identities = 31/58 (53%), Positives = 45/58 (77%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSIT 369
+IK++ DG I+RYKA LVAKGY+Q EG+DY F+PVAKL TV++L+++A V ++
Sbjct: 798 KIKHKADGTIERYKARLVAKGYTQREGIDYVDTFSPVAKLVTVKLLLAIAAVKGWHLS 855
Score = 54.3 bits (129), Expect(3) = 3e-46
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -2
Query: 685 PHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
P A + WR +M E++A+E+N TWS+V L K P+GCKWV+K+
Sbjct: 750 PSSFAKAAEIPEWRAAMDCELEALEENKTWSIVSLXVGKHPVGCKWVYKI 799
>gb|AAG50751.1|AC079733_19 polyprotein, putative [Arabidopsis thaliana]
Length = 1468
Score = 109 bits (273), Expect(3) = 4e-42
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYMKLP GF +VC+LHKSLYG+KQA F KLS++LKQ
Sbjct: 1065 QMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQ 1124
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS DYSLF + G+F +L+YVDD+II
Sbjct: 1125 YGFTQSLSDYSLFSYNNDGIFVHVLVYVDDLII 1157
Score = 60.5 bits (145), Expect(3) = 4e-42
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
+IKY+ DG I+RYKA LV G Q EGVDY FAPVAK++TVR+ + +A +
Sbjct: 1007 KIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHV 1063
Score = 48.9 bits (115), Expect(3) = 4e-42
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = -2
Query: 649 WRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
WR++M+ EI+++ N T+S+V LPP KR +G KWV+K+
Sbjct: 971 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKI 1008
>dbj|BAB10743.1| retroelement pol polyprotein-like [Arabidopsis thaliana]
Length = 1109
Score = 109 bits (273), Expect(3) = 4e-42
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYMKLP GF +VC+LHKSLYG+KQA F KLS++LKQ
Sbjct: 706 QMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQ 765
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS DYSLF + G+F +L+YVDD+II
Sbjct: 766 YGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLII 798
Score = 60.5 bits (145), Expect(3) = 4e-42
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
+IKY+ DG I+RYKA LV G Q EGVDY FAPVAK++TVR+ + +A +
Sbjct: 648 KIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHV 704
Score = 48.9 bits (115), Expect(3) = 4e-42
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = -2
Query: 649 WRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
WR++M+ EI+++ N T+S+V LPP KR +G KWV+K+
Sbjct: 612 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKI 649
>emb|CAA18107.1| LTR retrotransposon like protein [Arabidopsis thaliana]
gi|7269049|emb|CAB79159.1| LTR retrotransposon like
protein [Arabidopsis thaliana]
Length = 1109
Score = 109 bits (273), Expect(3) = 4e-42
Identities = 54/93 (58%), Positives = 68/93 (73%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYMKLP GF +VC+LHKSLYG+KQA F KLS++LKQ
Sbjct: 706 QMDVHNAFLHGDLKEEVYMKLPQGFQCDDPSKVCRLHKSLYGLKQAPRCWFSKLSSALKQ 765
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS DYSLF + G+F +L+YVDD+II
Sbjct: 766 YGFTQSLSDYSLFSYNNDGVFVHVLVYVDDLII 798
Score = 60.5 bits (145), Expect(3) = 4e-42
Identities = 29/57 (50%), Positives = 38/57 (66%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
+IKY+ DG I+RYKA LV G Q EGVDY FAPVAK++TVR+ + +A +
Sbjct: 648 KIKYRSDGAIERYKARLVVLGNCQKEGVDYDETFAPVAKMSTVRLFLGVAAARDWHV 704
Score = 48.9 bits (115), Expect(3) = 4e-42
Identities = 19/38 (50%), Positives = 30/38 (78%)
Frame = -2
Query: 649 WRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
WR++M+ EI+++ N T+S+V LPP KR +G KWV+K+
Sbjct: 612 WREAMSAEIESLRVNQTFSIVNLPPGKRALGNKWVYKI 649
>emb|CAN75292.1| hypothetical protein VITISV_014745 [Vitis vinifera]
Length = 1472
Score = 102 bits (255), Expect(3) = 1e-41
Identities = 52/94 (55%), Positives = 66/94 (70%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMR-VCKLHKSLYGVKQASHQLFLKLSTSLK 211
Q+DVNN FL+ DL E++YM P G +GE VC+LHKSLYG+KQAS Q F K S +++
Sbjct: 1080 QMDVNNAFLHGDLHEEIYMSSPPGLRRQGEENLVCRLHKSLYGLKQASRQWFAKFSEAIQ 1139
Query: 210 QAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
A + QS DYSLF R+ FT LLIYVDD++I
Sbjct: 1140 FADYAQSRADYSLFTRKQGKSFTALLIYVDDILI 1173
Score = 63.2 bits (152), Expect(3) = 1e-41
Identities = 27/57 (47%), Positives = 42/57 (73%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
+IK++ DG I+RYKA LVAKG++Q+EGVDY+ F+P K+ +VR L+++ S+
Sbjct: 1022 KIKHRSDGSIERYKARLVAKGFTQLEGVDYQDTFSPTTKIISVRCLLALVAARGWSL 1078
Score = 51.6 bits (122), Expect(3) = 1e-41
Identities = 19/38 (50%), Positives = 29/38 (76%)
Frame = -2
Query: 649 WRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
W+++M E++A++ N TWSL PLP K IGC+WV+K+
Sbjct: 986 WQEAMCFELQALQANGTWSLTPLPVCKTSIGCRWVYKI 1023
>ref|XP_006365584.1| PREDICTED: uncharacterized protein LOC102598606 [Solanum tuberosum]
Length = 1453
Score = 90.5 bits (223), Expect(3) = 1e-40
Identities = 49/94 (52%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
QLDVNN FL+ DL E+VYM +P G + VCKL+KSLYG+KQAS Q + KL+ +L
Sbjct: 801 QLDVNNAFLHGDLNEEVYMDVPPGLDVPHTGLVCKLNKSLYGLKQASRQWYEKLTAALNS 860
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILL-IYVDDVII 109
G+ S DYSL R+ KG T+ L +YVDD++I
Sbjct: 861 RGYTHSLHDYSLLFRK-KGHSTVFLGVYVDDILI 893
Score = 67.0 bits (162), Expect(3) = 1e-40
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
++K++ DG ++RYKA LV KGY+Q G+DY F+PV K+TTVRVLI++A SI
Sbjct: 743 KVKHKADGSVERYKARLVVKGYTQHHGIDYTETFSPVVKMTTVRVLIAIAAKKQWSI 799
Score = 56.6 bits (135), Expect(3) = 1e-40
Identities = 20/38 (52%), Positives = 30/38 (78%)
Frame = -2
Query: 649 WRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
W+ +M +E A+ DNNTWSL+PLP K+ +GC+WV+K+
Sbjct: 707 WQTAMTQEFTALHDNNTWSLMPLPIGKKSVGCRWVYKV 744
>gb|ABE88097.1| Reverse transcriptase (RNA-dependent DNA polymerase) [Medicago
truncatula]
Length = 293
Score = 93.6 bits (231), Expect(3) = 1e-40
Identities = 48/93 (51%), Positives = 64/93 (68%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q DVNN FL+ +L EDVYM +P G + VCKL+KSLYG++QAS + + KL+ L
Sbjct: 91 QFDVNNAFLHGELQEDVYMIIPPGVPHSHQDEVCKLNKSLYGLQQASMKWYEKLTNILIS 150
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
G++Q+ D SLFI+ FTILL+YVDDVI+
Sbjct: 151 TGYKQAASDASLFIKHTHSSFTILLVYVDDVIL 183
Score = 70.9 bits (172), Expect(3) = 1e-40
Identities = 33/53 (62%), Positives = 44/53 (83%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVN 384
+IK+ DG I+RYKA LVAKGY+QIEG+DY ++PVAKLTTVR +I++A +N
Sbjct: 33 KIKHNVDGSIERYKARLVAKGYNQIEGLDYFDTYSPVAKLTTVRFIIALASIN 85
Score = 49.7 bits (117), Expect(3) = 1e-40
Identities = 19/37 (51%), Positives = 25/37 (67%)
Frame = -2
Query: 637 MAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
M EI A+E TW +V LPP +PIGC+W+FK+ N
Sbjct: 1 MQSEITALEQTGTWKIVDLPPAVKPIGCRWIFKIKHN 37
>gb|AAB87099.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1496
Score = 98.2 bits (243), Expect(3) = 5e-39
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYM+LP GF +VC+L KSLYG+KQA F KLST+L+
Sbjct: 1093 QMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRN 1152
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS+ DYSLF ++ +L+YVDD+I+
Sbjct: 1153 IGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIV 1185
Score = 60.5 bits (145), Expect(3) = 5e-39
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
++KY DG ++R+KA LV G Q EGVD++ FAPVAKLTTVR ++++A +
Sbjct: 1035 KLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEV 1091
Score = 50.1 bits (118), Expect(3) = 5e-39
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -2
Query: 655 QNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
+ W ++M+KEI A+E N+TW + LP K+ I KWV+KL N
Sbjct: 997 KEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYN 1039
>gb|AAM98191.1| unknown protein [Arabidopsis thaliana] gi|38603804|gb|AAR24647.1|
At2g23330 [Arabidopsis thaliana]
gi|110742535|dbj|BAE99183.1| putative retroelement pol
polyprotein [Arabidopsis thaliana]
Length = 776
Score = 98.2 bits (243), Expect(3) = 5e-39
Identities = 48/93 (51%), Positives = 65/93 (69%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYM+LP GF +VC+L KSLYG+KQA F KLST+L+
Sbjct: 373 QMDVHNAFLHGDLEEEVYMRLPPGFKCSDPSKVCRLRKSLYGLKQAPRCWFSKLSTALRN 432
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS+ DYSLF ++ +L+YVDD+I+
Sbjct: 433 IGFTQSYEDYSLFSLKNGDTIIHVLVYVDDLIV 465
Score = 60.5 bits (145), Expect(3) = 5e-39
Identities = 27/57 (47%), Positives = 39/57 (68%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
++KY DG ++R+KA LV G Q EGVD++ FAPVAKLTTVR ++++A +
Sbjct: 315 KLKYNSDGTLERHKARLVVMGNHQKEGVDFKETFAPVAKLTTVRTILAVAAAKDWEV 371
Score = 50.1 bits (118), Expect(3) = 5e-39
Identities = 20/43 (46%), Positives = 29/43 (67%)
Frame = -2
Query: 655 QNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
+ W ++M+KEI A+E N+TW + LP K+ I KWV+KL N
Sbjct: 277 KEWCEAMSKEIDALEANHTWDITDLPHGKKAISSKWVYKLKYN 319
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 94.0 bits (232), Expect(3) = 7e-39
Identities = 50/93 (53%), Positives = 63/93 (67%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMRVCKLHKSLYGVKQASHQLFLKLSTSLKQ 208
Q+DV+N FL+ DL E+VYMKLP GF +VC+L KSLYG+KQA F KLS SL +
Sbjct: 1098 QMDVHNAFLHGDLEEEVYMKLPPGFRHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLR 1157
Query: 207 AGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
GF QS+ DYSLF + +LIYVDD++I
Sbjct: 1158 FGFVQSYEDYSLFSYTRNNIELRVLIYVDDLLI 1190
Score = 60.8 bits (146), Expect(3) = 7e-39
Identities = 27/61 (44%), Positives = 37/61 (60%)
Frame = -1
Query: 554 QMGIQIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMS 375
Q + KY DG ++RYKA LV +G Q+EG DY+ FAPV ++TTVR L+ N
Sbjct: 1036 QWVFKTKYNSDGTVERYKARLVVQGNKQVEGEDYKETFAPVVRMTTVRTLLRNVAANQWE 1095
Query: 374 I 372
+
Sbjct: 1096 V 1096
Score = 53.5 bits (127), Expect(3) = 7e-39
Identities = 24/56 (42%), Positives = 33/56 (58%)
Frame = -2
Query: 694 NILPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
N+ P + A + + W D+M E+ A+E N TW +V LPP K IG +WVFK N
Sbjct: 989 NVEPKHFKEAVQIKVWNDAMFTEVDALEINKTWDIVDLPPGKVAIGSQWVFKTKYN 1044
>emb|CAN60732.1| hypothetical protein VITISV_010209 [Vitis vinifera]
Length = 1409
Score = 89.0 bits (219), Expect(3) = 7e-39
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMR-VCKLHKSLYGVKQASHQLFLKLSTSLK 211
Q DV N FL+ DL E+VYM +P GF + + VCKL K+LYG+KQ+ F + S +++
Sbjct: 1005 QFDVKNAFLHGDLEEEVYMDIPPGFVSSTQGKEVCKLQKALYGLKQSPRAWFGRFSLAMR 1064
Query: 210 QAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
+ GF+QS D++LF++ +G T L+IYVDD+II
Sbjct: 1065 KHGFKQSNXDHTLFLKHQRGKVTALIIYVDDMII 1098
Score = 66.2 bits (160), Expect(3) = 7e-39
Identities = 31/48 (64%), Positives = 39/48 (81%)
Frame = -1
Query: 536 KYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
K++ DG ++RYKA LVAKGY+Q GVDY+ F+P AKL TVRVLIS+A
Sbjct: 949 KHKXDGSVERYKARLVAKGYTQTYGVDYQETFSPXAKLNTVRVLISLA 996
Score = 53.1 bits (126), Expect(3) = 7e-39
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVF 542
+P + A + W + +E+KA++ N+TW+LVPLP K+ +GC+WVF
Sbjct: 898 VPDTVSEAMNNPKWIQXIEEEMKALQKNDTWALVPLPXGKKTVGCRWVF 946
>gb|AAD25646.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1461
Score = 95.5 bits (236), Expect(3) = 2e-38
Identities = 50/98 (51%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGF-HLKGEMR----VCKLHKSLYGVKQASHQLFLKLS 223
QLD++N FLN DL E +YMKLP G+ +KG VC+L KS+YG+KQAS Q FLK S
Sbjct: 1053 QLDISNAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFS 1112
Query: 222 TSLKQAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
SL GF + D++LF+R F +LL+YVDD++I
Sbjct: 1113 NSLLALGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVI 1150
Score = 59.7 bits (143), Expect(3) = 2e-38
Identities = 24/49 (48%), Positives = 39/49 (79%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
+K+ DG ++R+KA +VAKGY+Q EG+DY F+PVAK+ TV++L+ ++
Sbjct: 996 VKFHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVS 1044
Score = 51.6 bits (122), Expect(3) = 2e-38
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNIN 527
+P A S+ W ++ +EI A+E +TW + LPP K+ +GCKWVF + +
Sbjct: 946 IPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVKFH 999
>gb|ABY49842.1| hypothetical protein [Vitis hybrid cultivar]
Length = 1382
Score = 80.9 bits (198), Expect(3) = 3e-37
Identities = 39/94 (41%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEM-RVCKLHKSLYGVKQASHQLFLKLSTSLK 211
QLD+ N FL+ DL E+VY++ P GF +GE +VC+L K+LYG+KQ+ F K S ++
Sbjct: 978 QLDIKNAFLHGDLEEEVYLEQPPGFVAQGEYGKVCRLKKALYGLKQSPRAWFGKFSKEIQ 1037
Query: 210 QAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
G +S D+S+F ++ +L++YVDD++I
Sbjct: 1038 AFGMNKSEKDHSVFYKKSAAGIILLVVYVDDIVI 1071
Score = 62.0 bits (149), Expect(3) = 3e-37
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNINP 524
+P + A W+++M +EI A+EDN+TW LV LP K+ +GCKWVF + +NP
Sbjct: 871 VPKTVTEALNHPGWKNAMLEEICALEDNHTWKLVDLPQGKKVVGCKWVFAVKVNP 925
Score = 60.1 bits (144), Expect(3) = 3e-37
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
+K PDG + R KA LVA+GY+Q GVDY F+PVAKL +VR+ IS+A
Sbjct: 921 VKVNPDGSVARLKARLVARGYAQTYGVDYSDTFSPVAKLNSVRLFISIA 969
>emb|CAN63534.1| hypothetical protein VITISV_001206 [Vitis vinifera]
Length = 1189
Score = 80.9 bits (198), Expect(3) = 3e-37
Identities = 39/94 (41%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEM-RVCKLHKSLYGVKQASHQLFLKLSTSLK 211
QLD+ N FL+ DL E+VY++ P GF +GE +VC+L K+LYG+KQ+ F K S ++
Sbjct: 833 QLDIKNAFLHGDLEEEVYLEQPPGFVAQGEYGKVCRLKKALYGLKQSPRAWFGKFSKEIQ 892
Query: 210 QAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
G +S D+S+F ++ +L++YVDD++I
Sbjct: 893 AFGMNKSEKDHSVFYKKSAAGIILLVVYVDDIVI 926
Score = 62.0 bits (149), Expect(3) = 3e-37
Identities = 25/55 (45%), Positives = 37/55 (67%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNINP 524
+P + A W+++M +EI A+EDN+TW LV LP K+ +GCKWVF + +NP
Sbjct: 726 VPKTVTEALNHPGWKNAMLEEICALEDNHTWKLVDLPQGKKVVGCKWVFAVKVNP 780
Score = 60.1 bits (144), Expect(3) = 3e-37
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
+K PDG + R KA LVA+GY+Q GVDY F+PVAKL +VR+ IS+A
Sbjct: 776 VKVNPDGSVARLKARLVARGYAQTYGVDYSDTFSPVAKLNSVRLFISIA 824
>emb|CAN71748.1| hypothetical protein VITISV_019194 [Vitis vinifera]
Length = 1306
Score = 80.9 bits (198), Expect(3) = 4e-37
Identities = 39/94 (41%), Positives = 62/94 (65%), Gaps = 1/94 (1%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEM-RVCKLHKSLYGVKQASHQLFLKLSTSLK 211
QLD+ N FL+ DL E+VY++ P GF +GE +VC+L K+LYG+KQ+ F K S ++
Sbjct: 938 QLDIKNAFLHGDLEEEVYLEQPPGFVAQGEYGKVCRLKKALYGLKQSPRAWFGKFSKEIQ 997
Query: 210 QAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
G +S D+S+F ++ +L++YVDD++I
Sbjct: 998 AFGMNKSEKDHSVFYKKSAAGIILLVVYVDDIVI 1031
Score = 61.2 bits (147), Expect(3) = 4e-37
Identities = 25/55 (45%), Positives = 36/55 (65%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNINP 524
+P + A W+++M EI A+EDN+TW LV LP K+ +GCKWVF + +NP
Sbjct: 831 VPKTVTEALNHPGWKNAMLXEICALEDNHTWKLVDLPQGKKVVGCKWVFAVKVNP 885
Score = 60.1 bits (144), Expect(3) = 4e-37
Identities = 28/49 (57%), Positives = 36/49 (73%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
+K PDG + R KA LVA+GY+Q GVDY F+PVAKL +VR+ IS+A
Sbjct: 881 VKVNPDGSVARLKARLVARGYAQTYGVDYSDTFSPVAKLNSVRLFISIA 929
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 89.0 bits (219), Expect(3) = 4e-37
Identities = 48/97 (49%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEMR---VCKLHKSLYGVKQASHQLFLKLSTS 217
QLDVNNVFLN +L E+VYM P F + + VCKLHK+LYG+KQA F KL S
Sbjct: 1099 QLDVNNVFLNGELQEEVYMDQPPSFEGRTNQKQKLVCKLHKALYGLKQAPRAWFDKLKIS 1158
Query: 216 LKQAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVIIP 106
L+Q GF + D SLF+R +L+YVDD++ P
Sbjct: 1159 LQQFGFSSTKSDQSLFVRFTNCSSLFVLVYVDDIVKP 1195
Score = 61.6 bits (148), Expect(3) = 4e-37
Identities = 28/57 (49%), Positives = 40/57 (70%)
Frame = -1
Query: 542 QIKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAVVNSMSI 372
++K PDG + R+KA LVAK YSQ+ G D+ F+PV K TT+RV++++ V S SI
Sbjct: 1041 KLKMYPDGSVSRHKARLVAKDYSQVPGFDFSETFSPVVKPTTIRVVLAIVVSQSWSI 1097
Score = 51.6 bits (122), Expect(3) = 4e-37
Identities = 21/54 (38%), Positives = 33/54 (61%)
Frame = -2
Query: 685 PHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKLNINP 524
P+ + A W+++M +E +A+ N TWS V L N+ +GC+WVFKL + P
Sbjct: 993 PNTFQEAISHPKWKEAMDEEFRALMKNKTWSFVSLLTNRTYVGCRWVFKLKMYP 1046
>gb|AAD26943.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1454
Score = 90.9 bits (224), Expect(3) = 6e-37
Identities = 45/98 (45%), Positives = 70/98 (71%), Gaps = 5/98 (5%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGF-HLKGEMR----VCKLHKSLYGVKQASHQLFLKLS 223
QLDV+N FLN +L E+++MK+P G+ KG + V +L +S+YG+KQAS Q F K S
Sbjct: 1046 QLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFS 1105
Query: 222 TSLKQAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
+SL GF+++ D++LF++ + G F I+L+YVDD++I
Sbjct: 1106 SSLLSLGFKKTHGDHTLFLKMYDGEFVIVLVYVDDIVI 1143
Score = 61.6 bits (148), Expect(3) = 6e-37
Identities = 26/49 (53%), Positives = 40/49 (81%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMA 393
+K+ DG ++RYKA LVAKGY+Q EG+DY F+PVAK+TT+++L+ ++
Sbjct: 989 LKFLADGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVS 1037
Score = 49.3 bits (116), Expect(3) = 6e-37
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -2
Query: 667 ANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVFKL 536
A ++ W +++ EI A+E NTW + LP K+ +GCKWVF L
Sbjct: 946 AQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTL 989
>emb|CAN82626.1| hypothetical protein VITISV_044103 [Vitis vinifera]
Length = 2075
Score = 84.0 bits (206), Expect(3) = 1e-36
Identities = 40/95 (42%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Frame = -3
Query: 387 QLDVNNVFLNSDLLEDVYMKLPHGFHLKGEM--RVCKLHKSLYGVKQASHQLFLKLSTSL 214
Q DV N FL+ +L ++VYM LP G + + +VCKL KSLYG+KQ+ F + + S+
Sbjct: 194 QFDVKNAFLHGELSKEVYMDLPLGCMMSEKQCQKVCKLKKSLYGLKQSPRAWFGRFTKSM 253
Query: 213 KQAGFRQSWVDYSLFIRQHKGMFTILLIYVDDVII 109
+ G+RQS D++LF+++ G T L++YVDD+++
Sbjct: 254 RAFGYRQSNSDHTLFLKKQHGKITTLIVYVDDMVV 288
Score = 65.1 bits (157), Expect(3) = 1e-36
Identities = 28/50 (56%), Positives = 39/50 (78%)
Frame = -1
Query: 539 IKYQPDGMIKRYKAHLVAKGYSQIEGVDYRAIFAPVAKLTTVRVLISMAV 390
+KY+ DG I+R+KA LVAKGY+Q G+DY FAP+ K+ VRVL+S+A+
Sbjct: 137 VKYKVDGSIERFKARLVAKGYTQTYGIDYTETFAPIVKINIVRVLLSLAI 186
Score = 51.6 bits (122), Expect(3) = 1e-36
Identities = 17/49 (34%), Positives = 33/49 (67%)
Frame = -2
Query: 688 LPHMLRLANKSQNWRDSMAKEIKAVEDNNTWSLVPLPPNKRPIGCKWVF 542
+P+ ++ A W+ +M +E+K+++ N TW LV P K+P+GC+W++
Sbjct: 87 IPNSVQEALTDPGWKAAMNEEMKSLQKNETWELVEYAPGKKPVGCRWIY 135