BLASTX nr result
ID: Rheum21_contig00027810
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00027810
(511 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containi... 80 3e-13
ref|XP_006355278.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
ref|XP_004485987.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
gb|EMJ13849.1| hypothetical protein PRUPE_ppa018206mg, partial [... 78 1e-12
ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containi... 78 1e-12
gb|ESW19934.1| hypothetical protein PHAVU_006G167300g [Phaseolus... 77 2e-12
ref|XP_003541672.2| PREDICTED: pentatricopeptide repeat-containi... 76 4e-12
ref|XP_004244886.1| PREDICTED: pentatricopeptide repeat-containi... 75 7e-12
ref|XP_002531058.1| pentatricopeptide repeat-containing protein,... 75 9e-12
ref|XP_006468073.1| PREDICTED: pentatricopeptide repeat-containi... 75 1e-11
gb|EOX96932.1| Tetratricopeptide repeat (TPR)-like superfamily p... 73 4e-11
gb|EXB51999.1| hypothetical protein L484_019777 [Morus notabilis] 72 8e-11
gb|EPS63069.1| hypothetical protein M569_11717 [Genlisea aurea] 72 1e-10
ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 72 1e-10
ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containi... 72 1e-10
ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. l... 67 2e-09
ref|NP_001078414.1| pentatricopeptide repeat-containing protein ... 65 9e-09
emb|CAB45902.1| putative protein (fragment) [Arabidopsis thalian... 65 9e-09
ref|XP_006413827.1| hypothetical protein EUTSA_v10027143mg [Eutr... 61 1e-07
ref|XP_006836321.1| hypothetical protein AMTR_s00092p00064890 [A... 55 1e-05
>ref|XP_004295634.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Fragaria vesca subsp. vesca]
Length = 611
Score = 80.1 bits (196), Expect = 3e-13
Identities = 42/79 (53%), Positives = 54/79 (68%)
Frame = +1
Query: 274 PESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXX 453
P +L++CI+LLQ+ ASS KLKQIH FSIR+GVP+S+PDMGKHLIF +V
Sbjct: 28 PSQTPLPFILQKCIALLQSCASSNSKLKQIHAFSIRHGVPLSNPDMGKHLIFTSV----- 82
Query: 454 XXXXXMCYAYNIFDQIQSP 510
M YA++IF QI+ P
Sbjct: 83 SLSSPMSYAHHIFSQIKHP 101
>ref|XP_006355278.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Solanum tuberosum]
Length = 585
Score = 78.2 bits (191), Expect = 1e-12
Identities = 40/76 (52%), Positives = 52/76 (68%)
Frame = +1
Query: 283 NTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXXX 462
+TK ++K+CI+LL + ASS YK KQ+H FSIR +P+SSP+MGK+LIF V
Sbjct: 5 STKPYIVKKCIALLLSCASSTYKFKQVHAFSIRRRIPLSSPEMGKYLIFTLV-----SLS 59
Query: 463 XXMCYAYNIFDQIQSP 510
MCYA IF+QIQ P
Sbjct: 60 GPMCYAKKIFNQIQFP 75
>ref|XP_004485987.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cicer arietinum]
Length = 610
Score = 78.2 bits (191), Expect = 1e-12
Identities = 44/92 (47%), Positives = 59/92 (64%)
Frame = +1
Query: 235 LLQILLFSTVNIVPESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMG 414
L + FST + P S+ +L +CI+LLQ ASS +KLKQIH FSIR+GVP+++PDMG
Sbjct: 18 LSSFITFSTTSENPTSH----ILTKCIALLQYCASSKHKLKQIHAFSIRHGVPLNNPDMG 73
Query: 415 KHLIFFAVXXXXXXXXXXMCYAYNIFDQIQSP 510
K+LIF V M YAYN+F + +P
Sbjct: 74 KYLIFTVV-----SLSAPMSYAYNVFTLLHNP 100
>gb|EMJ13849.1| hypothetical protein PRUPE_ppa018206mg, partial [Prunus persica]
Length = 604
Score = 77.8 bits (190), Expect = 1e-12
Identities = 40/71 (56%), Positives = 51/71 (71%)
Frame = +1
Query: 298 LLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXXXXXMCY 477
+L++CI+LLQ ASS K++QIH FS+R+GVP+SSPDMGKHLIF V M Y
Sbjct: 29 ILQKCIALLQCCASSKLKMQQIHAFSVRHGVPLSSPDMGKHLIFTTV-----SLKAPMPY 83
Query: 478 AYNIFDQIQSP 510
A+ IF QI+SP
Sbjct: 84 AHQIFSQIRSP 94
>ref|XP_003632994.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Vitis vinifera]
Length = 613
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/79 (53%), Positives = 56/79 (70%)
Frame = +1
Query: 274 PESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXX 453
PES KS +LK+CI+LL + ASS +K +QIH FSIR+GVP+++PDMGK+LIF +
Sbjct: 31 PES-PKSYILKKCIALLLSCASSKFKFRQIHAFSIRHGVPLTNPDMGKYLIFTLL----- 84
Query: 454 XXXXXMCYAYNIFDQIQSP 510
M YA+ IF QIQ+P
Sbjct: 85 SFCSPMSYAHQIFSQIQNP 103
>gb|ESW19934.1| hypothetical protein PHAVU_006G167300g [Phaseolus vulgaris]
Length = 611
Score = 77.4 bits (189), Expect = 2e-12
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +1
Query: 262 VNIVPESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVX 441
++ P++ LL +CI LLQ+SASS YKL+QIH FSIR+GV + +PDM KHLIF V
Sbjct: 24 LSTTPQNPLPYYLLTKCIVLLQSSASSKYKLRQIHAFSIRHGVSLHNPDMAKHLIFTIV- 82
Query: 442 XXXXXXXXXMCYAYNIFDQIQSP 510
M YAYN+F +I +P
Sbjct: 83 ----SLSAPMSYAYNVFTRIHNP 101
>ref|XP_003541672.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Glycine max]
Length = 607
Score = 76.3 bits (186), Expect = 4e-12
Identities = 45/84 (53%), Positives = 53/84 (63%)
Frame = +1
Query: 259 TVNIVPESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAV 438
T N V S T L +CISLLQ ASS +KLKQIH FSIR+GV +++PDMGKHLIF V
Sbjct: 21 TTNFV--STTPENPLTKCISLLQFCASSKHKLKQIHAFSIRHGVSLNNPDMGKHLIFTIV 78
Query: 439 XXXXXXXXXXMCYAYNIFDQIQSP 510
M YAYN+F I +P
Sbjct: 79 -----SLSAPMSYAYNVFTVIHNP 97
>ref|XP_004244886.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Solanum lycopersicum]
Length = 585
Score = 75.5 bits (184), Expect = 7e-12
Identities = 39/76 (51%), Positives = 51/76 (67%)
Frame = +1
Query: 283 NTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXXX 462
+TK ++K+CI+LL + ASS YK KQ+H FSIR +P+S+P MGK+LIF V
Sbjct: 5 STKPYIVKKCITLLLSCASSTYKFKQVHAFSIRRRIPLSNPYMGKYLIFTLV-----SLS 59
Query: 463 XXMCYAYNIFDQIQSP 510
MCYA IF+QIQ P
Sbjct: 60 GPMCYAQQIFNQIQFP 75
>ref|XP_002531058.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223529353|gb|EEF31319.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 341
Score = 75.1 bits (183), Expect = 9e-12
Identities = 42/89 (47%), Positives = 55/89 (61%)
Frame = +1
Query: 244 ILLFSTVNIVPESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHL 423
I F+ + N ++K+CI+LLQ ASS YKL+QIH FSIR+GV ++PDMGKHL
Sbjct: 20 ITYFTAPKPASKENPIPYIVKKCIALLQICASSKYKLQQIHAFSIRHGVLPNNPDMGKHL 79
Query: 424 IFFAVXXXXXXXXXXMCYAYNIFDQIQSP 510
I+ V M YA+NIF IQ+P
Sbjct: 80 IYSIV-----SVSAPMTYAHNIFTLIQNP 103
>ref|XP_006468073.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Citrus sinensis]
Length = 616
Score = 74.7 bits (182), Expect = 1e-11
Identities = 36/78 (46%), Positives = 54/78 (69%)
Frame = +1
Query: 277 ESNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXX 456
+ N + ++++CI+LLQ ASS +KLKQ+H FSIR+GVP+++PD+GK+LI+ V
Sbjct: 34 QENPITSVVRKCITLLQVCASSKHKLKQVHAFSIRHGVPLNNPDLGKYLIYAIV-----S 88
Query: 457 XXXXMCYAYNIFDQIQSP 510
M YA+NIF +Q P
Sbjct: 89 LSFPMSYAHNIFSHVQDP 106
>gb|EOX96932.1| Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1
[Theobroma cacao] gi|508705037|gb|EOX96933.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao] gi|508705038|gb|EOX96934.1|
Tetratricopeptide repeat (TPR)-like superfamily protein
isoform 1 [Theobroma cacao]
Length = 616
Score = 72.8 bits (177), Expect = 4e-11
Identities = 38/75 (50%), Positives = 50/75 (66%)
Frame = +1
Query: 283 NTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXXX 462
N S ++K+CISLLQ SS KL+QIH FS+R+GVP++ PD+GKHLI+ V
Sbjct: 36 NPVSFIVKKCISLLQNYGSSELKLRQIHAFSLRHGVPLNDPDIGKHLIYSLV-----SLS 90
Query: 463 XXMCYAYNIFDQIQS 507
M Y Y+IF +IQS
Sbjct: 91 TPMSYPYSIFSRIQS 105
>gb|EXB51999.1| hypothetical protein L484_019777 [Morus notabilis]
Length = 623
Score = 72.0 bits (175), Expect = 8e-11
Identities = 40/77 (51%), Positives = 49/77 (63%)
Frame = +1
Query: 280 SNTKSLLLKECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXX 459
+N +++ + ISLLQ ASS KL QIH FSIR+GVP++ PDMGKHLIF AV
Sbjct: 41 TNPIPIIIAKYISLLQLCASSESKLMQIHAFSIRHGVPLADPDMGKHLIFTAV-----SL 95
Query: 460 XXXMCYAYNIFDQIQSP 510
M YA N+F QI P
Sbjct: 96 SASMSYANNVFSQIDRP 112
>gb|EPS63069.1| hypothetical protein M569_11717 [Genlisea aurea]
Length = 601
Score = 71.6 bits (174), Expect = 1e-10
Identities = 40/80 (50%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Frame = +1
Query: 274 PESNTKSLLLKECISLLQASASSFY-KLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXX 450
P + +S +LK+CI+LL + ASS KL+Q+H FSIR+GV +SSP MGKHLIF V
Sbjct: 16 PSESGRSYILKKCIALLLSCASSSVAKLRQVHAFSIRHGVSLSSPSMGKHLIFTLV---- 71
Query: 451 XXXXXXMCYAYNIFDQIQSP 510
M YA+ +FDQI P
Sbjct: 72 -SLSEPMQYAHKVFDQIPHP 90
>ref|XP_004158687.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g21065-like [Cucumis sativus]
Length = 609
Score = 71.6 bits (174), Expect = 1e-10
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Frame = +1
Query: 238 LQILLFSTVNIVPESNTK-------SLLLKECISLLQASASSFYKLKQIHGFSIRNGVPV 396
L L F++ I S+++ S +L++CISL+Q SS KLKQIH FSIR+GVP
Sbjct: 6 LSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPP 65
Query: 397 SSPDMGKHLIFFAVXXXXXXXXXXMCYAYNIFDQIQSP 510
+PD KHLIF V M +A IF+QIQ+P
Sbjct: 66 QNPDFNKHLIFALV-----SLSAPMSFAAQIFNQIQAP 98
>ref|XP_004134903.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g21065-like [Cucumis sativus]
Length = 609
Score = 71.6 bits (174), Expect = 1e-10
Identities = 43/98 (43%), Positives = 57/98 (58%), Gaps = 7/98 (7%)
Frame = +1
Query: 238 LQILLFSTVNIVPESNTK-------SLLLKECISLLQASASSFYKLKQIHGFSIRNGVPV 396
L L F++ I S+++ S +L++CISL+Q SS KLKQIH FSIR+GVP
Sbjct: 6 LSFLCFTSRTITSNSSSQNFLDCHLSFILRKCISLVQLCGSSQSKLKQIHAFSIRHGVPP 65
Query: 397 SSPDMGKHLIFFAVXXXXXXXXXXMCYAYNIFDQIQSP 510
+PD KHLIF V M +A IF+QIQ+P
Sbjct: 66 QNPDFNKHLIFALV-----SLSAPMSFAAQIFNQIQAP 98
>ref|XP_002869909.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297315745|gb|EFH46168.1| binding protein [Arabidopsis
lyrata subsp. lyrata]
Length = 595
Score = 67.0 bits (162), Expect = 2e-09
Identities = 39/83 (46%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +1
Query: 274 PESNTKSLLL---KECISLLQA-SASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVX 441
P S T LLL ++CI+LLQ SS KL+QIH FSIRNGV +S ++GKHLIF+ V
Sbjct: 3 PFSETSVLLLPMVEKCINLLQTYGVSSLTKLRQIHAFSIRNGVSISDAELGKHLIFYLV- 61
Query: 442 XXXXXXXXXMCYAYNIFDQIQSP 510
M YA+ +F +I+ P
Sbjct: 62 --SLPSPPPMSYAHKVFSKIEKP 82
>ref|NP_001078414.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635630|sp|A8MQA3.2|PP330_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g21065 gi|332658994|gb|AEE84394.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 595
Score = 65.1 bits (157), Expect = 9e-09
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +1
Query: 274 PESNTKSLLL---KECISLLQA-SASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVX 441
P S T LLL ++CI+LLQ SS KL+QIH FSIR+GV +S ++GKHLIF+ V
Sbjct: 3 PFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLV- 61
Query: 442 XXXXXXXXXMCYAYNIFDQIQSP 510
M YA+ +F +I+ P
Sbjct: 62 --SLPSPPPMSYAHKVFSKIEKP 82
>emb|CAB45902.1| putative protein (fragment) [Arabidopsis thaliana]
gi|7268904|emb|CAB79107.1| putative protein (fragment)
[Arabidopsis thaliana]
Length = 1495
Score = 65.1 bits (157), Expect = 9e-09
Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Frame = +1
Query: 274 PESNTKSLLL---KECISLLQA-SASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVX 441
P S T LLL ++CI+LLQ SS KL+QIH FSIR+GV +S ++GKHLIF+ V
Sbjct: 3 PFSETSVLLLPMVEKCINLLQTYGVSSITKLRQIHAFSIRHGVSISDAELGKHLIFYLV- 61
Query: 442 XXXXXXXXXMCYAYNIFDQIQSP 510
M YA+ +F +I+ P
Sbjct: 62 --SLPSPPPMSYAHKVFSKIEKP 82
>ref|XP_006413827.1| hypothetical protein EUTSA_v10027143mg [Eutrema salsugineum]
gi|557114997|gb|ESQ55280.1| hypothetical protein
EUTSA_v10027143mg [Eutrema salsugineum]
Length = 595
Score = 61.2 bits (147), Expect = 1e-07
Identities = 34/81 (41%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Frame = +1
Query: 274 PESNTKSL-LLKECISLLQA-SASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXX 447
PE++ L ++ +CI+LLQ SS KLK++H FSIR+GV +S + GKHLIF+ V
Sbjct: 5 PETSVLLLPMVDKCITLLQTCGVSSLTKLKKVHAFSIRHGVSISDAEFGKHLIFYLV--- 61
Query: 448 XXXXXXXMCYAYNIFDQIQSP 510
M YA+ +F +I+ P
Sbjct: 62 SLPSPPPMSYAHKVFSKIEKP 82
>ref|XP_006836321.1| hypothetical protein AMTR_s00092p00064890 [Amborella trichopoda]
gi|548838839|gb|ERM99174.1| hypothetical protein
AMTR_s00092p00064890 [Amborella trichopoda]
Length = 285
Score = 55.1 bits (131), Expect = 1e-05
Identities = 32/68 (47%), Positives = 40/68 (58%)
Frame = +1
Query: 307 ECISLLQASASSFYKLKQIHGFSIRNGVPVSSPDMGKHLIFFAVXXXXXXXXXXMCYAYN 486
+C++LLQ + +S +KQIH F +RNGV S P +GKHLIF V M YA N
Sbjct: 57 QCVALLQ-NCNSLPSVKQIHAFGLRNGVAPSDPLVGKHLIFSLV-----SLSTPMRYALN 110
Query: 487 IFDQIQSP 510
IF IQ P
Sbjct: 111 IFSHIQFP 118