BLASTX nr result
ID: Rheum21_contig00027288
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00027288
(247 letters)
Database: nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containi... 77 2e-12
emb|CBI29077.3| unnamed protein product [Vitis vinifera] 77 2e-12
emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera] 72 6e-11
ref|XP_006847830.1| hypothetical protein AMTR_s00029p00051540 [A... 67 2e-09
ref|XP_002524455.1| pentatricopeptide repeat-containing protein,... 64 2e-08
gb|EMJ18914.1| hypothetical protein PRUPE_ppa004522mg [Prunus pe... 61 1e-07
ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containi... 61 2e-07
ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citr... 61 2e-07
ref|XP_002324235.2| pentatricopeptide repeat-containing family p... 61 2e-07
ref|XP_002328557.1| predicted protein [Populus trichocarpa] 60 3e-07
gb|EMJ05156.1| hypothetical protein PRUPE_ppa022872mg [Prunus pe... 60 4e-07
ref|XP_004249755.1| PREDICTED: pentatricopeptide repeat-containi... 60 4e-07
ref|XP_002529617.1| pentatricopeptide repeat-containing protein,... 60 4e-07
gb|ESW33726.1| hypothetical protein PHAVU_001G094000g [Phaseolus... 59 7e-07
emb|CBI15973.3| unnamed protein product [Vitis vinifera] 59 9e-07
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi... 59 9e-07
ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containi... 59 9e-07
emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera] 59 9e-07
emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera] 59 9e-07
emb|CBI35029.3| unnamed protein product [Vitis vinifera] 58 1e-06
>ref|XP_002263394.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 762
Score = 77.4 bits (189), Expect = 2e-12
Identities = 47/82 (57%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL + CK L+ KQVHAQII N F LS LASL AL+P LAYAKTIF H
Sbjct: 101 SLFNPCKTLRHLKQVHAQIITHHNSP-----FQLSALASLSALSP-FPTFLAYAKTIFHH 154
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
L NPP SL+N+LIR LS S P
Sbjct: 155 LQNPPPSLYNSLIRALSSSKTP 176
>emb|CBI29077.3| unnamed protein product [Vitis vinifera]
Length = 671
Score = 77.4 bits (189), Expect = 2e-12
Identities = 47/82 (57%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL + CK L+ KQVHAQII N F LS LASL AL+P LAYAKTIF H
Sbjct: 72 SLFNPCKTLRHLKQVHAQIITHHNSP-----FQLSALASLSALSP-FPTFLAYAKTIFHH 125
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
L NPP SL+N+LIR LS S P
Sbjct: 126 LQNPPPSLYNSLIRALSSSKTP 147
>emb|CAN68290.1| hypothetical protein VITISV_019715 [Vitis vinifera]
Length = 717
Score = 72.4 bits (176), Expect = 6e-11
Identities = 45/82 (54%), Positives = 51/82 (62%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL + CK L+ KQ+HAQII N F LS LASL AL+P LAYAKTIF H
Sbjct: 105 SLFNPCKTLRHLKQLHAQIITHHNSP-----FPLSALASLSALSP-FPTFLAYAKTIFHH 158
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
L NP SL+N+LIR LS S P
Sbjct: 159 LQNPSPSLYNSLIRALSSSKTP 180
>ref|XP_006847830.1| hypothetical protein AMTR_s00029p00051540 [Amborella trichopoda]
gi|548851135|gb|ERN09411.1| hypothetical protein
AMTR_s00029p00051540 [Amborella trichopoda]
Length = 181
Score = 67.4 bits (163), Expect = 2e-09
Identities = 36/82 (43%), Positives = 51/82 (62%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SLLDSC ++ Q KQ+HA II+ + +F SRL + CA++P S+ +AK IF
Sbjct: 16 SLLDSCTHMNQLKQIHAHIIIQ---GLSRSNFTGSRLIAFCAVSPY--ASIDHAKLIFAQ 70
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P I WN++IRGLS+S P
Sbjct: 71 IQEPSIFTWNSMIRGLSMSSNP 92
>ref|XP_002524455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536243|gb|EEF37895.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 486
Score = 64.3 bits (155), Expect = 2e-08
Identities = 34/82 (41%), Positives = 49/82 (59%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL +CKNLK KQ+H+Q+I + F LS+L C ++P L+YA +F
Sbjct: 29 TLLSTCKNLKTLKQIHSQVIKT---GLHNTHFALSKLIEFCVISPY--GDLSYALLLFKS 83
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P +WNN+IRGLSLS+ P
Sbjct: 84 IGKPNQIIWNNIIRGLSLSESP 105
>gb|EMJ18914.1| hypothetical protein PRUPE_ppa004522mg [Prunus persica]
Length = 505
Score = 61.2 bits (147), Expect = 1e-07
Identities = 37/81 (45%), Positives = 47/81 (58%)
Frame = -2
Query: 243 LLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDHL 64
LL+ C KQ QVHAQI VS Q+ F L++L CAL+P + YA+T+ DH
Sbjct: 26 LLNLCFTFKQLSQVHAQIQVS---GFQRDHFLLTQLIRFCALSPSKNFN--YARTLLDHS 80
Query: 63 PNPPISLWNNLIRGLSLSDRP 1
+ P S WN LIRG + SD P
Sbjct: 81 ESSPPSSWNFLIRGYASSDTP 101
>ref|XP_006475804.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Citrus sinensis]
Length = 736
Score = 60.8 bits (146), Expect = 2e-07
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL C N++ KQVH+QII + ++Q F LS+L +CA++P G L+YA +F+
Sbjct: 35 ALLSKCTNMQNIKQVHSQIIKTGLHNTQ---FALSKLIEICAVSP-FG-DLSYALLVFET 89
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P +WNN+IRG SLS P
Sbjct: 90 IREPNQVIWNNIIRGHSLSSSP 111
>ref|XP_006450982.1| hypothetical protein CICLE_v10010823mg [Citrus clementina]
gi|557554208|gb|ESR64222.1| hypothetical protein
CICLE_v10010823mg [Citrus clementina]
Length = 736
Score = 60.8 bits (146), Expect = 2e-07
Identities = 35/82 (42%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL C N++ KQVH+QII + ++Q F LS+L +CA++P G L+YA +F+
Sbjct: 35 ALLSKCTNMQNIKQVHSQIIKTGLHNTQ---FALSKLIEICAVSP-FG-DLSYALLVFET 89
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P +WNN+IRG SLS P
Sbjct: 90 IREPNQVIWNNIIRGHSLSSSP 111
>ref|XP_002324235.2| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|550317719|gb|EEF02800.2|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 736
Score = 60.8 bits (146), Expect = 2e-07
Identities = 33/82 (40%), Positives = 50/82 (60%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL +CK L+ KQ+H+QII + F LS+L CA++P L+YA ++F
Sbjct: 33 TLLSNCKTLQTLKQIHSQIIKT---GLHNTHFALSKLIEFCAVSPH--GDLSYALSLFKT 87
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ NP +WN++IRGLS S+ P
Sbjct: 88 IRNPNHVIWNHMIRGLSSSESP 109
>ref|XP_002328557.1| predicted protein [Populus trichocarpa]
Length = 643
Score = 60.1 bits (144), Expect = 3e-07
Identities = 36/82 (43%), Positives = 48/82 (58%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SLL+ CK+L FKQ+HA + L L + F +L CA++ L SL YA +F +
Sbjct: 10 SLLNICKSLTTFKQIHANV---LKLGLESDPFIAGKLLHHCAIS--LSDSLDYACRLFRY 64
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
PNP + + N LIRGL SDRP
Sbjct: 65 TPNPDVFMHNTLIRGLYESDRP 86
>gb|EMJ05156.1| hypothetical protein PRUPE_ppa022872mg [Prunus persica]
Length = 714
Score = 59.7 bits (143), Expect = 4e-07
Identities = 33/81 (40%), Positives = 47/81 (58%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL CK+++ KQVHA II + F LS+L CA++P G L+YA +F
Sbjct: 38 TLLSKCKSMQNLKQVHAHIIKT---GLHNTHFALSKLVEFCAISP-FG-DLSYALLVFQS 92
Query: 66 LPNPPISLWNNLIRGLSLSDR 4
+ NP +WN +IRG SLS +
Sbjct: 93 IENPNQIIWNTIIRGFSLSSK 113
>ref|XP_004249755.1| PREDICTED: pentatricopeptide repeat-containing protein At1g59720,
mitochondrial-like [Solanum lycopersicum]
Length = 593
Score = 59.7 bits (143), Expect = 4e-07
Identities = 32/75 (42%), Positives = 45/75 (60%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL+ C NL+ +Q+H II L S +SF LS++ + AL+P SL YAK +
Sbjct: 21 SLVQKCPNLRILQQIHGHIITHSFLPSSAISFILSKVLTFAALSP--NGSLNYAKRVLTQ 78
Query: 66 LPNPPISLWNNLIRG 22
+PNP I +N+LIRG
Sbjct: 79 IPNPSIFSYNSLIRG 93
>ref|XP_002529617.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223530902|gb|EEF32762.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 438
Score = 59.7 bits (143), Expect = 4e-07
Identities = 36/82 (43%), Positives = 50/82 (60%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL+ C NL +Q+HA+I+ L L +SF LS++ S AL+P LG L YA+ IF
Sbjct: 133 SLIQKCPNLHFLRQIHARILTRL-LPIPTISFLLSKILSFSALSP-LG-DLNYARKIFAQ 189
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+PNP I +N +IRG S + P
Sbjct: 190 IPNPGIFPYNTIIRGCSYAKNP 211
>gb|ESW33726.1| hypothetical protein PHAVU_001G094000g [Phaseolus vulgaris]
Length = 465
Score = 58.9 bits (141), Expect = 7e-07
Identities = 34/73 (46%), Positives = 45/73 (61%)
Frame = -2
Query: 243 LLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDHL 64
L D+C L Q KQ+HAQ+IVS ++S F +SRL S CAL+P L++A IF
Sbjct: 24 LADNCTTLDQLKQLHAQMIVSAVVTSD--PFAVSRLLSSCALSP--FADLSHASRIFHSA 79
Query: 63 PNPPISLWNNLIR 25
P+P +WN LIR
Sbjct: 80 PHPNSFMWNTLIR 92
>emb|CBI15973.3| unnamed protein product [Vitis vinifera]
Length = 652
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL+D C KQ KQ+HAQ++ + F SRL + AL+P SL YA+ +FD
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDP---FSASRLITAAALSP--FPSLDYAQQVFDQ 94
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+P+P + WN LIR + S P
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNP 116
>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL+D C KQ KQ+HAQ++ + F SRL + AL+P SL YA+ +FD
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDP---FSASRLITAAALSP--FPSLDYAQQVFDQ 94
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+P+P + WN LIR + S P
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNP 116
>ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08070-like [Vitis vinifera]
Length = 738
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/82 (40%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL +CK+ + KQ+H+QII + ++Q F LS+L CA++P G +L+YA +F+
Sbjct: 37 TLLSTCKSFQNLKQIHSQIIKTGLHNTQ---FALSKLIEFCAISP-FG-NLSYALLLFES 91
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P +WN +IRG SLS P
Sbjct: 92 IEQPNQFIWNTMIRGNSLSSSP 113
>emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
Length = 694
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/82 (40%), Positives = 46/82 (56%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
SL+D C KQ KQ+HAQ++ + F SRL + AL+P SL YA+ +FD
Sbjct: 40 SLIDQCSETKQLKQIHAQMLRTGLFFDP---FSASRLITAAALSP--FPSLDYAQQVFDQ 94
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+P+P + WN LIR + S P
Sbjct: 95 IPHPNLYTWNTLIRAYASSSNP 116
>emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
Length = 748
Score = 58.5 bits (140), Expect = 9e-07
Identities = 33/82 (40%), Positives = 52/82 (63%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVSLNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFDH 67
+LL +CK+ + KQ+H+QII + ++Q F LS+L CA++P G +L+YA +F+
Sbjct: 37 TLLSTCKSFQNLKQIHSQIIKTGLHNTQ---FALSKLIEFCAISP-FG-NLSYALLLFES 91
Query: 66 LPNPPISLWNNLIRGLSLSDRP 1
+ P +WN +IRG SLS P
Sbjct: 92 IEQPNQFIWNTMIRGNSLSSSP 113
>emb|CBI35029.3| unnamed protein product [Vitis vinifera]
Length = 1596
Score = 58.2 bits (139), Expect = 1e-06
Identities = 35/83 (42%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = -2
Query: 246 SLLDSCKNLKQFKQVHAQIIVS-LNLSSQQLSFHLSRLASLCALAPPLGVSLAYAKTIFD 70
SL SC N++QFK +HA IV+ L+L++ + +S+L S CAL+ SL+YA IF
Sbjct: 9 SLAQSCSNMRQFKAIHALFIVNGLHLNN----YAISKLISFCALSN--SGSLSYASLIFS 62
Query: 69 HLPNPPISLWNNLIRGLSLSDRP 1
+ NP + +N LIR S S P
Sbjct: 63 QIQNPNLFAYNTLIRAYSRSSTP 85