BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00027161
         (1199 letters)

Database: nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...   212   1e-72
gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis ...   193   8e-66
dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like ...   197   3e-65
gb|AAD22368.1| putative non-LTR retroelement reverse transcripta...   203   3e-65
gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thali...   213   1e-62
gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thali...   210   9e-62
gb|ABK28199.1| unknown [Arabidopsis thaliana]                         213   1e-61
gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thali...   230   1e-57
gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]               224   4e-56
gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]              211   5e-52
sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H pr...   211   5e-52
emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulga...   164   7e-52
gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]              209   2e-51
gb|AAC26674.1| putative non-LTR retroelement reverse transcripta...   200   8e-49
dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like ...   191   5e-46
gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]               139   2e-44
ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein A...   130   2e-43
gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]               145   4e-43
dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]             132   1e-41
dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]             130   3e-41

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1231

 Score =  212 bits (540), Expect(2) = 1e-72
 Identities = 107/258 (41%), Positives = 145/258 (56%), Gaps = 2/258 (0%)
 Frame = -2

Query: 829  FFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFIL 650
            FF  +  +W   N++    I     W  +F   IWW W+W+   +F E K+  ++  FI 
Sbjct: 980  FFSQSLLEWLFTNMDPVKGI-----WPTLFGMGIWWAWKWRCCDVFGERKICRDRLKFIK 1034

Query: 649  ARTKEYAEANTVYGPAQARPE--REEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLI 476
               +E    +   G    RP   R E +I W  P  GW K+  DGAS+GN GLA AGG I
Sbjct: 1035 DMAEEVRRVHV--GAVGNRPNGVRVERMIRWQVPSDGWVKITTDGASRGNHGLAAAGGAI 1092

Query: 475  RNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGA 296
            RN QG+W+ GF  N+G    P AELW   YGL +AW+K   R+ +++D ++ V  L  G 
Sbjct: 1093 RNGQGEWLGGFALNIGSCAAPLAELWGAYYGLLIAWDKGFRRVELDLDCKLVVGFLSTGV 1152

Query: 295  EPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGI 116
               HPL  LV  CQG+  +DWLV V+H++RE NR+AD LAN AF + LG H F   P G+
Sbjct: 1153 SNAHPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFTLPLGLHCFDACPEGV 1212

Query: 115  RNLMLDDRGGLSFPRSVV 62
            R L+L D  G  FPR+V+
Sbjct: 1213 RLLLLADVNGTEFPRAVL 1230



 Score = 89.4 bits (220), Expect(2) = 1e-72
 Identities = 44/114 (38%), Positives = 64/114 (56%)
 Frame = -1

Query: 1169 DGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKRV 990
            D I+ K +  G FT  S Y L+  +        + +N I +   P+RVR+F WLV    +
Sbjct: 868  DEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMGSFFNRIWKLITPERVRVFIWLVSQNVI 927

Query: 989  LTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
            +TNVE VRRHL+   +C VC+  +ET+ H+ RDCP  + +W +L P   H  FF
Sbjct: 928  MTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWRRLLPLRRHHEFF 981


>gb|ABW81175.1| non-LTR retrotransposon transposase [Arabidopsis cebennensis]
          Length = 799

 Score =  193 bits (491), Expect(2) = 8e-66
 Identities = 97/250 (38%), Positives = 143/250 (57%)
 Frame = -2

Query: 832  SFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFI 653
            +FF     +W   N+    +++ G  W     + + W W+W+   +F       +   F+
Sbjct: 543  TFFTQTLLEWVYDNLGDSGKVD-GCPW-----SCVRWGWKWRCGNVFGVNGKCRDMVKFV 596

Query: 652  LARTKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
              R  E  +A+ V G +     R E ++ WV P  GW KLN DGASKGN GLA AGG++R
Sbjct: 597  RDRASEVIQAHLVEGNSGKIRGRIERMVSWVKPAEGWLKLNTDGASKGNPGLATAGGILR 656

Query: 472  NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
               G W+ GF  N+GI   P AELW   YGL +AWE+ ITRL VE+DSE+ V  L     
Sbjct: 657  QQDGSWIGGFAVNIGICSAPLAELWRVYYGLYIAWERKITRLEVEVDSELVVGFLTTWIS 716

Query: 292  PTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIR 113
             +HPL  LV  C G++ +DW+V ++H++RE NR+AD LAN A  + LGFH+F      + 
Sbjct: 717  DSHPLSFLVRLCYGFISRDWIVRISHVYREANRLADGLANYASSLPLGFHSFDVCLKIVY 776

Query: 112  NLMLDDRGGL 83
            +++++D+ G+
Sbjct: 777  SVLVEDKNGV 786



 Score = 85.5 bits (210), Expect(2) = 8e-66
 Identities = 39/117 (33%), Positives = 65/117 (55%)
 Frame = -1

Query: 1169 DGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKRV 990
            D ++   S  G FT  S Y  + ++  P    + +Y+ + +   P+RV++F WL + + +
Sbjct: 432  DRLSWGESLDGKFTVKSAYSSLMKDNTPRSDLSRMYDRVWKVIAPERVKIFLWLGVHQVI 491

Query: 989  LTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFFLPT 819
            +TN+E  RRHL+   +C+VC  GDET+ H+ RDCP    +W ++ P      FF  T
Sbjct: 492  MTNMERQRRHLSDTGICQVCKGGDETIIHILRDCPAMYGIWTRIIPRRKRGTFFTQT 548


>dbj|BAB09815.1| non-LTR retroelement reverse transcriptase-like [Arabidopsis
            thaliana]
          Length = 676

 Score =  197 bits (501), Expect(2) = 3e-65
 Identities = 96/258 (37%), Positives = 143/258 (55%)
 Frame = -2

Query: 838  QVSFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQA 659
            Q  FF+ +  +W   N+   S  +    W  +F  ++WW W+W+   +F E+    ++  
Sbjct: 418  QRRFFETSLLEWMYGNLKERSD-SERRSWPTLFALTVWWGWKWRCGYVFGEDSRCRDRVK 476

Query: 658  FILARTKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGL 479
            F+ +   E   A+             E +I W  P  GW  +N DGAS GN G A AGG+
Sbjct: 477  FLKSAVAEVEAAHLAANGDAREDVLVERMIAWRKPAEGWVTMNTDGASHGNPGQATAGGV 536

Query: 478  IRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKG 299
            IR++ G W+ GF  N+G+   P AELW   YGL VAWE+   R+ +E+DS + V  L+ G
Sbjct: 537  IRDEHGSWLVGFALNIGVCSAPLAELWGVYYGLVVAWERGWRRVRLEVDSALVVGFLQSG 596

Query: 298  AEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPG 119
               +HPL  LV  C G++ +DW+V +TH++RE NR+AD LAN AF +  GF    + P  
Sbjct: 597  IGDSHPLAFLVRLCHGFISKDWIVRITHVYREANRLADGLANYAFTLPFGFLLLDSCPEH 656

Query: 118  IRNLMLDDRGGLSFPRSV 65
            + +++L+D  G SFPR V
Sbjct: 657  VSSILLEDVMGTSFPRHV 674



 Score = 79.7 bits (195), Expect(2) = 3e-65
 Identities = 41/120 (34%), Positives = 65/120 (54%), Gaps = 4/120 (3%)
 Frame = -1

Query: 1175 GADGIAGKVS----SSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWL 1008
            G  G+  K+S     +G FT +S Y + + + +     +  ++ + R  VP+R R+F WL
Sbjct: 303  GCYGVEDKMSWVGTENGRFTVSSAYLIQSVDEISKQCMSRFFDRVWRVMVPERARIFLWL 362

Query: 1007 VLGKRVLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
            V  + VLTN E VRRH+A   +C +C    E+L H+ RDCP    +W+++ P      FF
Sbjct: 363  VGNQVVLTNAERVRRHMADSDVCPLCKGASESLIHVLRDCPAMMGIWMRVVPVMEQRRFF 422


>gb|AAD22368.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 321

 Score =  203 bits (516), Expect(2) = 3e-65
 Identities = 97/255 (38%), Positives = 145/255 (56%)
 Frame = -2

Query: 829 FFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFIL 650
           FF  +  +W   N+           W  +F+ ++WW W+W+   IF       ++  FI 
Sbjct: 71  FFTASLLEWIYKNLRERG------SWPTVFVMAVWWGWKWRCGNIFGGNGKCRDRVKFIK 124

Query: 649 ARTKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRN 470
              +E A AN      + R  R E L+ WV+P  GW KLN DGAS+GN G A AGG++R+
Sbjct: 125 DLAEEVAIANAFVKGNEVRVSRVERLVSWVSPEDGWVKLNTDGASRGNPGFATAGGVLRD 184

Query: 469 DQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEP 290
             G W+ GF  N+G+   P AELW   YGL +AW +   R+ +E+DS++ V  L  G   
Sbjct: 185 HNGAWIGGFAVNIGVCSAPLAELWGVYYGLFIAWGRGARRVELEVDSKMVVGFLTTGIAD 244

Query: 289 THPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRN 110
           +HPL  L+  C  +L + W+V ++H++RE NR+AD LAN AF + LG H   ++P  + +
Sbjct: 245 SHPLSFLLRLCYDFLSKGWIVRISHVYREANRLADGLANYAFSLSLGLHLLESRPDVVSS 304

Query: 109 LMLDDRGGLSFPRSV 65
           ++LDD  G+S+PR V
Sbjct: 305 ILLDDVAGVSYPRHV 319



 Score = 73.9 bits (180), Expect(2) = 3e-65
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = -1

Query: 1037 PKRVRMFAWLVLGKRVLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKL 858
            P+RVR+F WLV+ + ++TNVE  RRHL+   +C++C  G+ET+ H+ RDCP    +W +L
Sbjct: 3    PERVRVFLWLVVQQVIITNVERYRRHLSDTRVCQICQGGEETILHVLRDCPAMAGIWSRL 62

Query: 857  AP 852
             P
Sbjct: 63   VP 64


>gb|AAD21515.1| putative reverse transcriptase [Arabidopsis thaliana]
           gi|20197456|gb|AAM15081.1| putative reverse
           transcriptase [Arabidopsis thaliana]
          Length = 314

 Score =  213 bits (542), Expect(2) = 1e-62
 Identities = 104/256 (40%), Positives = 147/256 (57%), Gaps = 1/256 (0%)
 Frame = -2

Query: 829 FFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFIL 650
           FF  +  +W   N+    R      W  +F  SIWW W+W+   IF  +    ++  F+ 
Sbjct: 58  FFTQSLLEWLFANLG-DRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLK 116

Query: 649 ARTKEYAEANTVYGPAQA-RPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
              +E + A+ +         ER E LI W  P  GW+KLN DGAS+GN GLA AGG++R
Sbjct: 117 DLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLR 176

Query: 472 NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
           +++G W  GF  N+G+   P AELW   YGL +AWE+ +TRL +E+DSE+ V  LK G  
Sbjct: 177 DEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGIN 236

Query: 292 PTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIR 113
             HPL  LV  C  ++ +DW V ++H++RE NR+AD LAN AF + LGFH+    P  +R
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296

Query: 112 NLMLDDRGGLSFPRSV 65
            ++LDD  G +  R V
Sbjct: 297 FILLDDTSGATVSRQV 312



 Score = 55.1 bits (131), Expect(2) = 1e-62
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = -1

Query: 992 VLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
           ++TN E  RRHL+   +C++C   ++T+ H+ RDCP  + +WI+L P+     FF
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFF 59


>gb|ABE65462.1| hypothetical protein At2g27870 [Arabidopsis thaliana]
          Length = 314

 Score =  210 bits (535), Expect(2) = 9e-62
 Identities = 103/256 (40%), Positives = 146/256 (57%), Gaps = 1/256 (0%)
 Frame = -2

Query: 829 FFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFIL 650
           FF  +  +W   N+    R      W  +F  SIWW W+W+   IF  +    ++  F+ 
Sbjct: 58  FFTQSLLEWLFANLG-DRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLK 116

Query: 649 ARTKEYAEANTVYGPAQA-RPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
              +E + A+ +         ER E LI W  P  GW+KLN DGAS+GN GLA AGG++R
Sbjct: 117 DLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLR 176

Query: 472 NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
           +++G W  GF  N+G+   P AELW   YGL +AWE+ +TRL +E+DSE+ V  LK    
Sbjct: 177 DEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIXIN 236

Query: 292 PTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIR 113
             HPL  LV  C  ++ +DW V ++H++RE NR+AD LAN AF + LGFH+    P  +R
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296

Query: 112 NLMLDDRGGLSFPRSV 65
            ++LDD  G +  R V
Sbjct: 297 FILLDDTSGATVSRQV 312



 Score = 55.1 bits (131), Expect(2) = 9e-62
 Identities = 21/55 (38%), Positives = 35/55 (63%)
 Frame = -1

Query: 992 VLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
           ++TN E  RRHL+   +C++C   ++T+ H+ RDCP  + +WI+L P+     FF
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCPAMEGIWIRLVPAGKRREFF 59


>gb|ABK28199.1| unknown [Arabidopsis thaliana]
          Length = 315

 Score =  213 bits (542), Expect(2) = 1e-61
 Identities = 104/256 (40%), Positives = 147/256 (57%), Gaps = 1/256 (0%)
 Frame = -2

Query: 829 FFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFIL 650
           FF  +  +W   N+    R      W  +F  SIWW W+W+   IF  +    ++  F+ 
Sbjct: 58  FFTQSLLEWLFANLG-DRRKTCESTWSTLFALSIWWAWKWRCGNIFGVQDKCRDRVRFLK 116

Query: 649 ARTKEYAEANTVYGPAQA-RPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
              +E + A+ +         ER E LI W  P  GW+KLN DGAS+GN GLA AGG++R
Sbjct: 117 DLARETSMAHVIVRTLSGGHGERVERLIAWSKPEEGWWKLNTDGASRGNPGLASAGGVLR 176

Query: 472 NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
           +++G W  GF  N+G+   P AELW   YGL +AWE+ +TRL +E+DSE+ V  LK G  
Sbjct: 177 DEEGAWRGGFALNIGVCSAPLAELWGVYYGLYIAWERRVTRLEIEVDSEIVVGFLKIGIN 236

Query: 292 PTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIR 113
             HPL  LV  C  ++ +DW V ++H++RE NR+AD LAN AF + LGFH+    P  +R
Sbjct: 237 EVHPLSFLVRLCHDFISRDWRVRISHVYREANRLADGLANYAFSLPLGFHSLSLVPDSLR 296

Query: 112 NLMLDDRGGLSFPRSV 65
            ++LDD  G +  R V
Sbjct: 297 FILLDDTSGATVSRQV 312



 Score = 52.0 bits (123), Expect(2) = 1e-61
 Identities = 20/55 (36%), Positives = 34/55 (61%)
 Frame = -1

Query: 992 VLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
           ++TN E  RRHL+   +C++C   ++T+ H+ RDC   + +WI+L P+     FF
Sbjct: 5   LMTNAERRRRHLSDSDICQICKGAEKTIIHILRDCXAMEGIWIRLVPAGKRREFF 59


>gb|AAF97302.1|AC007843_5 Hypothetical protein [Arabidopsis thaliana]
           gi|55978717|gb|AAV68820.1| hypothetical protein
           AT1G17390 [Arabidopsis thaliana]
          Length = 272

 Score =  230 bits (586), Expect = 1e-57
 Identities = 113/256 (44%), Positives = 157/256 (61%)
 Frame = -2

Query: 832 SFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFI 653
           SFF  +  +W   N+     IN G  W + F  +IWW W+W+   IF E K   ++  FI
Sbjct: 16  SFFSKSLLEWIYANLGEEIEIN-GCPWAVTFSQAIWWGWKWRYGNIFGENKKCRDRVRFI 74

Query: 652 LARTKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
             R  +  +A+        R  REE LI W  PR+GWFKLN DGAS+GN  LA AGG++R
Sbjct: 75  KDRALDVWKAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVR 134

Query: 472 NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
           +  G+W  GF+ N+GI   P AELW   YGL +AWE+ +T+L +EIDSE+ V  L+ G +
Sbjct: 135 DGDGNWCYGFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGID 194

Query: 292 PTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIR 113
            +HPL  LV  C G L +DW V ++H++RE NR+AD LAN AF + LGFH F + P  + 
Sbjct: 195 DSHPLSFLVRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVM 254

Query: 112 NLMLDDRGGLSFPRSV 65
           +++ DD  G ++PR+V
Sbjct: 255 SIVHDDVAGSAYPRNV 270


>gb|AAF79490.1|AC022492_34 F1L3.4 [Arabidopsis thaliana]
          Length = 253

 Score =  224 bits (572), Expect = 4e-56
 Identities = 110/248 (44%), Positives = 153/248 (61%)
 Frame = -2

Query: 808 DWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILARTKEYA 629
           +W   N+     IN G  W + F  +IWW W+W+   IF E K   ++  FI  R  +  
Sbjct: 5   EWIYANLGEEIEIN-GCPWAVTFSQAIWWGWKWRYGNIFGENKKCRDRVRFIKDRALDVW 63

Query: 628 EANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRNDQGDWVC 449
           +A+        R  REE LI W  PR+GWFKLN DGAS+GN  LA AGG++R+  G+W  
Sbjct: 64  KAHVHKMGVTTRTAREERLIAWSPPRVGWFKLNTDGASRGNPRLATAGGVVRDGDGNWCY 123

Query: 448 GFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEPTHPLFIL 269
           GF+ N+GI   P AELW   YGL +AWE+ +T+L +EIDSE+ V  L+ G + +HPL  L
Sbjct: 124 GFSLNIGICSAPLAELWGAYYGLNIAWERGVTQLEMEIDSEMVVGFLRTGIDDSHPLSFL 183

Query: 268 VLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRNLMLDDRG 89
           V  C G L +DW V ++H++RE NR+AD LAN AF + LGFH F + P  + +++ DD  
Sbjct: 184 VRLCHGLLSKDWSVRISHVYREANRLADGLANYAFFLPLGFHLFNSTPDIVMSIVHDDVA 243

Query: 88  GLSFPRSV 65
           G ++PR+V
Sbjct: 244 GSAYPRNV 251


>gb|AAF23831.1|AC007234_3 F1E22.12 [Arabidopsis thaliana]
          Length = 1055

 Score =  211 bits (537), Expect = 5e-52
 Identities = 110/261 (42%), Positives = 151/261 (57%), Gaps = 3/261 (1%)
 Frame = -2

Query: 838  QVSFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQA 659
            Q  FF  + ++W   N+   S       W  +F   IWW W+W+   IF E     ++  
Sbjct: 471  QQGFFSKSLFEWLYDNLGDRSGCE-DIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVK 529

Query: 658  FILARTKEYAEA---NTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARA 488
            F+     E   A   N + G  Q R ER   +I WV+P +GW K+N DGAS+GN GLA A
Sbjct: 530  FVKEWAVEVYRAHSGNVLVGITQPRVER---MIGWVSPCVGWVKVNTDGASRGNPGLASA 586

Query: 487  GGLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLL 308
            GG++R+  G W  GF+ N+G    P+AELW   YGL  AWEK + R+ +E+DSEV V  L
Sbjct: 587  GGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFL 646

Query: 307  KKGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQ 128
            K G   +HPL  LV  C G+L++DWLV + H++RE NR+AD LAN AF + LGFH+F   
Sbjct: 647  KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLV 706

Query: 127  PPGIRNLMLDDRGGLSFPRSV 65
            P  + +L+ +D  G + PR V
Sbjct: 707  PDAMSSLLREDTLGSTRPRRV 727



 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 41/119 (34%), Positives = 67/119 (56%)
 Frame = -1

Query: 1169 DGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKRV 990
            D ++ K S  G F+  S Y+++  + VP     + +N + +  VP+RV+ F WLV  + V
Sbjct: 362  DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 421

Query: 989  LTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFFLPTEF 813
            +T  E  RRHL+   +C+VC  G E++ H+ RDCP    +W+++ P     GFF  + F
Sbjct: 422  MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 480


>sp|P0C2F6.1|RNHX1_ARATH RecName: Full=Putative ribonuclease H protein At1g65750
          Length = 620

 Score =  211 bits (537), Expect = 5e-52
 Identities = 110/261 (42%), Positives = 151/261 (57%), Gaps = 3/261 (1%)
 Frame = -2

Query: 838  QVSFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQA 659
            Q  FF  + ++W   N+   S       W  +F   IWW W+W+   IF E     ++  
Sbjct: 362  QQGFFSKSLFEWLYDNLGDRSGCE-DIPWSTIFAVIIWWGWKWRCGNIFGENTKCRDRVK 420

Query: 658  FILARTKEYAEA---NTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARA 488
            F+     E   A   N + G  Q R ER   +I WV+P +GW K+N DGAS+GN GLA A
Sbjct: 421  FVKEWAVEVYRAHSGNVLVGITQPRVER---MIGWVSPCVGWVKVNTDGASRGNPGLASA 477

Query: 487  GGLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLL 308
            GG++R+  G W  GF+ N+G    P+AELW   YGL  AWEK + R+ +E+DSEV V  L
Sbjct: 478  GGVLRDCTGAWCGGFSLNIGRCSAPQAELWGVYYGLYFAWEKKVPRVELEVDSEVIVGFL 537

Query: 307  KKGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQ 128
            K G   +HPL  LV  C G+L++DWLV + H++RE NR+AD LAN AF + LGFH+F   
Sbjct: 538  KTGISDSHPLSFLVRLCHGFLQKDWLVRIVHVYREANRLADGLANYAFSLSLGFHSFDLV 597

Query: 127  PPGIRNLMLDDRGGLSFPRSV 65
            P  + +L+ +D  G + PR V
Sbjct: 598  PDAMSSLLREDTLGSTRPRRV 618



 Score = 87.0 bits (214), Expect = 1e-14
 Identities = 41/119 (34%), Positives = 67/119 (56%)
 Frame = -1

Query: 1169 DGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKRV 990
            D ++ K S  G F+  S Y+++  + VP     + +N + +  VP+RV+ F WLV  + V
Sbjct: 253  DRLSWKFSQDGQFSVRSAYEMLTVDEVPRPNMASFFNCLWKVRVPERVKTFLWLVGNQAV 312

Query: 989  LTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFFLPTEF 813
            +T  E  RRHL+   +C+VC  G E++ H+ RDCP    +W+++ P     GFF  + F
Sbjct: 313  MTEEERHRRHLSASNVCQVCKGGVESMLHVLRDCPAQLGIWVRVVPQRRQQGFFSKSLF 371


>emb|CCA66009.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1378

 Score =  164 bits (414), Expect(2) = 7e-52
 Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 4/257 (1%)
 Frame = -2

Query: 823  QLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IF-KEEKVGFEKQAFILA 647
            ++N   W + N++  + +  G +W+ +F  S WW+WRW+N   F +   +  ++ +FI A
Sbjct: 1122 EINLGSWITKNLSADTMM--GSEWLRVFAVSCWWLWRWRNDRCFNRNPSIPIDQVSFIFA 1179

Query: 646  RTKEYAEA--NTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIR 473
            R KE  EA        +Q    R+EIL+ W  P+ GW KLN DGASKGN G A  GGLIR
Sbjct: 1180 RVKEIKEAMDRNDTNKSQHSGRRKEILVRWQCPKEGWVKLNTDGASKGNPGPAGGGGLIR 1239

Query: 472  NDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAE 293
              +G+    F  N G     +AEL + L GL +AWE N  +++V +DSE+   LL   A 
Sbjct: 1240 GPRGEIHEVFAINCGSCTCTKAELLAVLRGLMIAWEGNHKQVIVSVDSELVAKLLISNAP 1299

Query: 292  PTHPLFILVLRCQGYL-KQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGI 116
            P+ P   ++ RC   + +++W + + H +RE NR AD LAN+              P  +
Sbjct: 1300 PSSPYIHIINRCLSLIARKEWKIVIEHCYRETNRAADRLANMGVCAVERVVMIEAIPKDL 1359

Query: 115  RNLMLDDRGGLSFPRSV 65
              ++L+D  G+++ R V
Sbjct: 1360 HAILLEDLSGVAWTRMV 1376



 Score = 68.6 bits (166), Expect(2) = 7e-52
 Identities = 36/112 (32%), Positives = 53/112 (47%)
 Frame = -1

Query: 1193 LADPWEGADGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFA 1014
            L D  E  D I    S SG FT  S   +     +     +  ++ + +   P+RVR F 
Sbjct: 1001 LIDDEEAIDDIYWNGSPSGGFTIGSAMNITRNAELANMDAHPKWSAVWKIPTPQRVRFFI 1060

Query: 1013 WLVLGKRVLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKL 858
            WL +  R++TN     R L  +P C VC   +E  +H+ R CP+ + LW KL
Sbjct: 1061 WLAIQDRLMTNSNRFLRRLTDDPRCLVCGEVEENTDHILRRCPVARILWRKL 1112


>gb|AAF19536.1|AC007190_4 F23N19.5 [Arabidopsis thaliana]
          Length = 233

 Score =  209 bits (532), Expect = 2e-51
 Identities = 98/221 (44%), Positives = 136/221 (61%)
 Frame = -2

Query: 727 WWIWRWQNL*IFKEEKVGFEKQAFILARTKEYAEANTVYGPAQARPEREEILIHWVAPRL 548
           WW W+W+   +F E +   ++   +    +E A+AN     +     R E  + W  P L
Sbjct: 11  WWGWKWRCGNVFGENRKCRDRVKLVKDIAQEVAKANNCGSGSNNSRSRMERQVRWSKPSL 70

Query: 547 GWFKLNCDGASKGNSGLARAGGLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAW 368
           GW KLN DGAS GN GLA AGG +RN+ G+W  GF  N+G  L P AELW   YGL +AW
Sbjct: 71  GWCKLNTDGASHGNPGLATAGGALRNEYGEWCFGFALNIGRCLAPLAELWGVYYGLFMAW 130

Query: 367 EKNITRLLVEIDSEVAVNLLKKGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVA 188
           ++ ITRL +E+DSE+ V  L+ G   +HPL  LV  C G+L +DW+V + H++RE NR+A
Sbjct: 131 DRGITRLELEVDSEMVVGFLRTGIGSSHPLSFLVRMCHGFLSRDWIVRIGHVYREANRLA 190

Query: 187 DALANLAFPIDLGFHAFCTQPPGIRNLMLDDRGGLSFPRSV 65
           D LAN AF + LG+HAF + P  + +++ DD  G+S PR V
Sbjct: 191 DGLANYAFDLPLGYHAFASPPNSLDSILRDDELGISVPRLV 231


>gb|AAC26674.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 970

 Score =  200 bits (509), Expect = 8e-49
 Identities = 103/255 (40%), Positives = 144/255 (56%), Gaps = 1/255 (0%)
 Frame = -2

Query: 823  QLNFYDWFSWNINLHSRINVGE-KWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILA 647
            Q  F+  F W   L + ++  +  W  +F   IWW W+W+   +F E K+  ++  FI  
Sbjct: 718  QNEFFSQFEW---LFTNLDPAKGDWPTLFSMGIWWAWKWRCGDVFGERKLCRDRLKFIKD 774

Query: 646  RTKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRND 467
              +E  +A+        +  R E +I W AP   W KL  DGAS+G+ GLA A G I N 
Sbjct: 775  IAEEVRKAHVGTLNNHVKRARVERMIRWKAPSDRWVKLTTDGASRGHQGLAAASGAILNL 834

Query: 466  QGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEPT 287
            QG+W+ GF  N+G    P AELW   YGL +AW+K   R+ + +DSE+ V  L  G    
Sbjct: 835  QGEWLGGFALNIGSCDAPLAELWGAYYGLLIAWDKGFRRVELNLDSELVVGFLSTGISKA 894

Query: 286  HPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRNL 107
            HPL  LV  CQG+  +DWLV V+H++RE NR+AD LAN AF + LGFH F   P  +   
Sbjct: 895  HPLSFLVRLCQGFFTRDWLVRVSHVYREANRLADGLANYAFFLPLGFHCFEICPEDVLLF 954

Query: 106  MLDDRGGLSFPRSVV 62
            +++D  G SFPR+V+
Sbjct: 955  LVEDANGTSFPRAVL 969



 Score = 82.8 bits (203), Expect = 3e-13
 Identities = 43/121 (35%), Positives = 65/121 (53%)
 Frame = -1

Query: 1172 ADGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKR 993
            +D ++ K + +G+FT  S Y+L+           +    I +   P+RVR+F WLV    
Sbjct: 608  SDELSWKGTQNGDFTVRSAYELLKPEAEERPLIGSFLKQIWKLVAPERVRVFIWLVSHMV 667

Query: 992  VLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFFLPTEF 813
            ++TNVE VRRHL+    C VC+  DE++ H+ RDCP    +W +L P      FF   E+
Sbjct: 668  IMTNVERVRRHLSDIATCSVCNGADESILHVLRDCPAMTPIWQRLLPQRRQNEFFSQFEW 727

Query: 812  L 810
            L
Sbjct: 728  L 728


>dbj|BAB09192.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 308

 Score =  191 bits (485), Expect = 5e-46
 Identities = 103/261 (39%), Positives = 143/261 (54%), Gaps = 3/261 (1%)
 Frame = -2

Query: 838 QVSFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQA 659
           Q  FF  + ++W   N+   S       W  +F   IWW W+W+   IF E     ++  
Sbjct: 50  QQGFFSKSLFEWLYDNLCDRSSCE-DIPWSTIFAVIIWWGWKWRCSNIFGENTKCRDRVK 108

Query: 658 FILARTKEYAEA---NTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARA 488
           F+     E   A   N + G  Q R ER   LI WV P +GW K+N DGAS+GN GLA A
Sbjct: 109 FVKEWVVEVYRAHLGNALVGSTQPRVER---LIGWVLPCVGWVKVNTDGASRGNPGLASA 165

Query: 487 GGLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLL 308
           GG++R+ +G W  GF+ N+G      AELW   YGL  AWEK + R+ +E+DSE  V  L
Sbjct: 166 GGVLRDCEGAWCGGFSLNIGRCSAQHAELWGVYYGLYFAWEKKVPRVELEVDSEAIVGFL 225

Query: 307 KKGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQ 128
           K G   +HPL  LV  C  +L++DWLV + +++RE N +AD LAN    + LGFH+F   
Sbjct: 226 KTGISDSHPLSFLVRLCHNFLQKDWLVRIVYVYREANCLADGLANYTILLSLGFHSFDFV 285

Query: 127 PPGIRNLMLDDRGGLSFPRSV 65
           P  + +L+ +D  G +  R V
Sbjct: 286 PDAMSSLLKEDTLGSTQLRRV 306


>gb|EOY02864.1| Ribonuclease H protein [Theobroma cacao]
          Length = 660

 Score =  139 bits (349), Expect(2) = 2e-44
 Identities = 84/265 (31%), Positives = 131/265 (49%), Gaps = 7/265 (2%)
 Frame = -2

Query: 838  QVSFFQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQA 659
            Q  FF     +W   N+     I +G  W ++F  + W +W+W+N  +F        K+ 
Sbjct: 399  QNDFFTFPLREWLVSNLQKQQLI-LGNPWSVVFGLACWCLWKWRNGVVFYAAFNPTRKRI 457

Query: 658  FILAR--TKEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAG 485
             ++    T   A +    G    R ++EE+LI W  P++GW  LN D A K +   A  G
Sbjct: 458  SMIKSMATATIATSADFDGVQVERRKKEEVLIGWRTPQVGWVCLNTDEAYKRSIEEASTG 517

Query: 484  GLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSE-----VA 320
            G+IRN +GDW   F A LG      AELW  L+GL++AW+    ++ V++D++     V+
Sbjct: 518  GVIRNAEGDWQAEFLAKLGKCSAYRAELWGVLHGLRLAWDSGFKKVQVQVDNKMVVPAVS 577

Query: 319  VNLLKKGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHA 140
             N L  GA        L+   +  L+++W VS  H + EGN V D LA+ AF ++  +  
Sbjct: 578  TNKLIPGANTD-----LIRAIKDVLQKEWEVSFMHTYCEGNMVTDYLASYAFVLEKSYIV 632

Query: 139  FCTQPPGIRNLMLDDRGGLSFPRSV 65
                P G R L++ D  G+  PR +
Sbjct: 633  LEQAPTGARKLLMYDMLGVCLPRMI 657



 Score = 68.9 bits (167), Expect(2) = 2e-44
 Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = -1

Query: 1148 SSSGNFTTNSTYKLIAENTVP*-GPPNAVYNYI*RASVPKRVRMFAWLVLGKRVLTNVES 972
            S+SG FT  S Y  + + + P    P+ ++    +    +RVR F +  L  R+LTN E 
Sbjct: 296  SASGQFTVASVYDYLRQLSSPAKARPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNRER 355

Query: 971  VRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAPSY*HPGFF 828
            + R L  + LC  C   DET+ H+ RDC +   LW+K+ P +    FF
Sbjct: 356  LHRQLTTDSLCPQCRMEDETVTHVLRDCMVATSLWVKIIPQHEQNDFF 403


>ref|XP_004301145.1| PREDICTED: putative ribonuclease H protein At1g65750-like [Fragaria
           vesca subsp. vesca]
          Length = 411

 Score =  130 bits (327), Expect(2) = 2e-43
 Identities = 83/258 (32%), Positives = 123/258 (47%), Gaps = 6/258 (2%)
 Frame = -2

Query: 826 FQLNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILA 647
           F L++  W     + H  I    +W  +F+   W+IW+W+N  IF          AFIL 
Sbjct: 154 FSLDWNGWICAQFHCHVVIKNNIQWCNLFVFVCWFIWKWRNKVIFDP--------AFILP 205

Query: 646 RTKEYAEANTV--YGPAQARPEREEI----LIHWVAPRLGWFKLNCDGASKGNSGLARAG 485
                   N V  +  AQ++   + +    +  W  P   ++KLN DG+   +SG   AG
Sbjct: 206 ACPNKVIWNYVDEWSSAQSKASMQSMFSYTMFSWCKPPENFYKLNIDGSRSFSSGCIGAG 265

Query: 484 GLIRNDQGDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLK 305
           G++R+  G W+ GF  NLG     +AE W   +GL++    NI  L +E DS + V L+ 
Sbjct: 266 GVLRDHLGIWIDGFQVNLGTGEVLDAEAWGLFFGLRMVAMHNIVNLEIESDSALLVQLML 325

Query: 304 KGAEPTHPLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQP 125
           K     HP   L+  C   + +   V++ HIFRE N VADALA  +   DLG  +F   P
Sbjct: 326 KSDTGVHPFGSLLDSCSVMMSKLLNVNIKHIFRECNMVADALAKNSINHDLGLISFDVVP 385

Query: 124 PGIRNLMLDDRGGLSFPR 71
                 +LDD  G++  R
Sbjct: 386 AHAIQAVLDDLAGVTRAR 403



 Score = 73.9 bits (180), Expect(2) = 2e-43
 Identities = 33/103 (32%), Positives = 59/103 (57%)
 Frame = -1

Query: 1175 GADGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGK 996
            G D +    +++G F+  S Y    ++    G  N ++ ++ + + P +++ F W VL +
Sbjct: 42   GHDKLIWNATANGKFSVKSAYNSFFDSA---GVSNPLWTHLWKLNCPPKLKTFMWYVLHQ 98

Query: 995  RVLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLW 867
            ++LTNV+ VRR  +    C +C + DETL HL RDCP ++ +W
Sbjct: 99   KILTNVQRVRRGFSTIASCPICKNADETLLHLLRDCPRSQAIW 141


>gb|EOX98014.1| Ribonuclease H protein [Theobroma cacao]
          Length = 528

 Score =  145 bits (365), Expect(2) = 4e-43
 Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 5/241 (2%)
 Frame = -2

Query: 766 VGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILARTKEYAEANTVY-----GPA 602
           +G  W I+F  + W++W+W+N  +F    V F      ++  K  A A         G  
Sbjct: 180 LGNPWSIVFRLACWYLWKWRNGVVFD---VAFNPTRKRISMIKSMATATIAPSADFDGVQ 236

Query: 601 QARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRNDQGDWVCGFTANLGIA 422
             R ++EE+LI W AP++GW  LN DGA K +   A AGG+ RN +GDW  GF A LG  
Sbjct: 237 VERRKKEEVLIEWRAPQVGWVCLNTDGAYKRSIEEASAGGVKRNAEGDWQAGFVAKLGKC 296

Query: 421 LPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEPTHPLFILVLRCQGYLK 242
               AELW  L+GL++AW+    ++ V++D+++ V  +            L+   +  L+
Sbjct: 297 SAYRAELWGILHGLRLAWDSGFKKVQVQVDNKMVVQAISTDKLIPGANTDLISAIKNVLQ 356

Query: 241 QDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRNLMLDDRGGLSFPRSVV 62
           ++W VS  H +REGN VAD LA+ AF ++  +      P G R L++ D  G     S +
Sbjct: 357 KEWEVSFMHTYREGNMVADYLASYAFVLEESYVVLEQAPTGARKLLIYDMLGTMTNASQL 416

Query: 61  R 59
           R
Sbjct: 417 R 417



 Score = 58.2 bits (139), Expect(2) = 4e-43
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 1/95 (1%)
 Frame = -1

Query: 1148 SSSGNFTTNSTYKLIAENTVP*-GPPNAVYNYI*RASVPKRVRMFAWLVLGKRVLTNVES 972
            S+SG FT  S Y  + + + P    P+ ++    +    +RVR F +  L  R+LTN + 
Sbjct: 80   SASGQFTIASAYDYLRQLSSPTKARPSGIWQGAWKWQGSQRVRTFLFQCLHGRLLTNRKR 139

Query: 971  VRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLW 867
            + R L  + LC  C   DET+ H+ RDC +   LW
Sbjct: 140  LHRQLTADSLCPQCRMEDETVTHVLRDCMVATSLW 174


>dbj|BAE79384.1| unnamed protein product [Ipomoea batatas]
          Length = 1898

 Score =  132 bits (332), Expect(2) = 1e-41
 Identities = 85/251 (33%), Positives = 120/251 (47%), Gaps = 1/251 (0%)
 Frame = -2

Query: 820  LNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILART 641
            L+ + W     +   +   G  W ++F   +W +W+ +N  +F          + IL R+
Sbjct: 1649 LHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNN---ITAPSDILNRS 1705

Query: 640  -KEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRNDQ 464
              E +EA  +           +  + W  P  G+ KLN DGA K +S LA AGGL+RN+ 
Sbjct: 1706 FMESSEARCLLAKRTGLQTAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNEN 1765

Query: 463  GDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEPTH 284
            G WV G+T N+G A    AELW    GL +A  +  T+L+ E DSE  V +L+K    T 
Sbjct: 1766 GLWVAGYTCNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTP 1825

Query: 283  PLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRNLM 104
               ILV  C+  L     + VTHI REGN+ AD LANL      G       P  +R  +
Sbjct: 1826 DASILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILERPPDDLRIFL 1885

Query: 103  LDDRGGLSFPR 71
              D  GL+  R
Sbjct: 1886 QRDAIGLASSR 1896



 Score = 65.9 bits (159), Expect(2) = 1e-41
 Identities = 34/99 (34%), Positives = 54/99 (54%)
 Frame = -1

Query: 1148 SSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLGKRVLTNVESV 969
            S++G  T +S Y LIA +          +++I RA+  +++++F W ++   ++ NVE  
Sbjct: 1545 STTGMVTVSSAYSLIAGHD----GDGRSHDWIWRATCTEKIKLFMWKIVKNGLMVNVERK 1600

Query: 968  RRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAP 852
            RR LA    C VC   DETL+HLFR C + +  W    P
Sbjct: 1601 RRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVP 1639


>dbj|BAE79385.1| unnamed protein product [Ipomoea batatas]
          Length = 1366

 Score =  130 bits (326), Expect(2) = 3e-41
 Identities = 84/251 (33%), Positives = 119/251 (47%), Gaps = 1/251 (0%)
 Frame = -2

Query: 820  LNFYDWFSWNINLHSRINVGEKWIIMFLTSIWWIWRWQNL*IFKEEKVGFEKQAFILART 641
            L+ + W     +   +   G  W ++F   +W +W+ +N  +F          + IL R+
Sbjct: 1117 LHMHSWMKAACSSQQKDGYGTNWSLIFPYILWNLWKARNRLVFDNN---ITAPSDILNRS 1173

Query: 640  -KEYAEANTVYGPAQARPEREEILIHWVAPRLGWFKLNCDGASKGNSGLARAGGLIRNDQ 464
              E +EA  +           +  + W  P  G+ KLN DGA K +S LA AGGL+RN+ 
Sbjct: 1174 FMESSEARCLLAKRTGLQTAFQTWVVWSPPAAGFTKLNSDGACKSHSHLASAGGLLRNEN 1233

Query: 463  GDWVCGFTANLGIALPPEAELWSFLYGLKVAWEKNITRLLVEIDSEVAVNLLKKGAEPTH 284
            G WV G+  N+G A    AELW    GL +A  +  T+L+ E DSE  V +L+K    T 
Sbjct: 1234 GLWVAGYICNIGTANSFLAELWGLREGLLLAKNRGFTKLIAETDSEAVVQVLRKDGPVTP 1293

Query: 283  PLFILVLRCQGYLKQDWLVSVTHIFREGNRVADALANLAFPIDLGFHAFCTQPPGIRNLM 104
               ILV  C+  L     + VTHI REGN+ AD LANL      G       P  +R  +
Sbjct: 1294 DASILVKDCKLLLDHFQEIKVTHILREGNQCADFLANLGQSSSWGTTILERPPDDLRIFL 1353

Query: 103  LDDRGGLSFPR 71
              D  GL+  R
Sbjct: 1354 QRDAIGLASSR 1364



 Score = 67.0 bits (162), Expect(2) = 3e-41
 Identities = 36/109 (33%), Positives = 59/109 (54%)
 Frame = -1

Query: 1178 EGADGIAGKVSSSGNFTTNSTYKLIAENTVP*GPPNAVYNYI*RASVPKRVRMFAWLVLG 999
            E  D ++   S++G  T +S Y LIA +       +  +++I RA+  +++++F W ++ 
Sbjct: 1003 EQEDFLSWPHSTTGMVTVSSAYSLIAGHD----GDDRSHDWIWRATCTEKIKLFMWKIVK 1058

Query: 998  KRVLTNVESVRRHLAHEPLCEVCHHGDETLEHLFRDCPITKQLWIKLAP 852
              ++ NVE  RR LA    C VC   DETL+HLFR C + +  W    P
Sbjct: 1059 NGLMVNVERKRRGLADAASCPVCGEEDETLDHLFRRCLLAEACWDSAVP 1107