BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00027096
         (1735 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subun...   439   0.0  
ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatu...   430   0.0  
ref|YP_001936549.1| RNA polymerase alpha subunit [Fagopyrum escu...   482   e-169
gb|AFB74287.1| DNA-directed RNA polymerase subunit alpha, partia...   476   e-160
gb|AFB74291.1| DNA-directed RNA polymerase subunit alpha, partia...   471   e-159
gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]    460   e-158
gb|AFB74293.1| DNA-directed RNA polymerase subunit alpha, partia...   464   e-157
gb|AFB74285.1| DNA-directed RNA polymerase subunit alpha, partia...   469   e-157
gb|AFB74286.1| DNA-directed RNA polymerase subunit alpha, partia...   466   e-157
gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidops...   457   e-156
gb|AFB74288.1| DNA-directed RNA polymerase subunit alpha, partia...   459   e-156
gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sa...   455   e-154
gb|AFB74290.1| DNA-directed RNA polymerase subunit alpha, partia...   464   e-153
ref|YP_008814888.1| RNA polymerase alpha subunit (chloroplast) [...   448   e-153
gb|AFB74289.1| DNA-directed RNA polymerase subunit alpha, partia...   455   e-153
ref|YP_008999966.1| RNA polymerase alpha subunit (chloroplast) [...   457   e-153
ref|NP_054966.1| RNA polymerase alpha subunit [Spinacia oleracea...   449   e-153
ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]...   444   e-153
ref|YP_008815149.1| RNA polymerase alpha subunit (chloroplast) [...   446   e-152
ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [...   447   e-152

>ref|XP_004173875.1| PREDICTED: DNA-directed RNA polymerase subunit alpha-like [Cucumis
            sativus]
          Length = 466

 Score =  439 bits (1129), Expect(3) = 0.0
 Identities = 216/253 (85%), Positives = 237/253 (93%), Gaps = 2/253 (0%)
 Frame = -2

Query: 1161 REKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 982
            R+KIRVSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQ DTIGIAMR+ALLGEIEGTCI
Sbjct: 136  RQKIRVSTRTLKWKCVESRADSKRLYYGRFILSPLMKGQGDTIGIAMRKALLGEIEGTCI 195

Query: 981  TRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQDII 802
            TRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGT DASIC++GPGCVTAQDII
Sbjct: 196  TRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTRDASICVKGPGCVTAQDII 255

Query: 801  LPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVRNV 622
            LPP VEIVD TQHIANL EPI+L I L++E+NRGY I+TPNNFQD SYP+DA+FMPVRNV
Sbjct: 256  LPPSVEIVDNTQHIANLMEPINLCIELKIERNRGYHIQTPNNFQDASYPMDAIFMPVRNV 315

Query: 621  NHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYA--EKENFYLE 448
            NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+A  EKENF+L+
Sbjct: 316  NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEEKENFHLK 375

Query: 447  DNQDRVTLPLFSF 409
            +N+ +VTLPLF+F
Sbjct: 376  NNKKKVTLPLFTF 388



 Score =  239 bits (610), Expect(3) = 0.0
 Identities = 117/130 (90%), Positives = 124/130 (95%)
 Frame = -1

Query: 1660 MAKPIPRIGSHRNRRINSRKSARKIPKGVIYVQAGFNNTIVTVTDVRGRVVSWASAGTCG 1481
            MAKPIPRIGS RN RI+SRKS R+IPKGVI+VQA FNNTIVTVTDVRGRV+SW+SAGTCG
Sbjct: 1    MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 1480 FKGAKRGTPFAAQTAAGNAIRKVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 1301
            FKG +RGTPFAAQTAAGNAIR VVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSF+R
Sbjct: 61   FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120

Query: 1300 DVTPMPHNGC 1271
            DVTPMPHNGC
Sbjct: 121  DVTPMPHNGC 130



 Score = 98.6 bits (244), Expect(3) = 0.0
 Identities = 52/75 (69%), Positives = 58/75 (77%), Gaps = 3/75 (4%)
 Frame = -1

Query: 418 FFFHDRLTELR*K---IALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH++L +LR K   IALK IFIDQ ELPPRIYN LK  NIH L DLLNNS ++LMKI+
Sbjct: 386 FTFHEKLAKLRKKKKEIALKYIFIDQSELPPRIYNCLKRCNIHTLFDLLNNSPDELMKIK 445

Query: 247 HFHIEDVKQILDTLE 203
           HF IEDVK ILD LE
Sbjct: 446 HFRIEDVKHILDILE 460


>ref|XP_003606056.1| 30S ribosomal protein S11 [Medicago truncatula]
            gi|355507111|gb|AES88253.1| 30S ribosomal protein S11
            [Medicago truncatula]
          Length = 466

 Score =  430 bits (1105), Expect(3) = 0.0
 Identities = 213/251 (84%), Positives = 228/251 (90%)
 Frame = -2

Query: 1161 REKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCI 982
            R+K++VS RTLQWKCVESR DSKRLYYGRFILSPL KGQADTIGIAMRR LLGEIEGTCI
Sbjct: 136  RQKVKVSARTLQWKCVESRVDSKRLYYGRFILSPLRKGQADTIGIAMRRILLGEIEGTCI 195

Query: 981  TRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQDII 802
            TRAK EKIPHEYSTIVGIQES+HEILMNLKEIVL+SN+YGT DASIC +GPG VTAQDII
Sbjct: 196  TRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLKSNLYGTRDASICFKGPGYVTAQDII 255

Query: 801  LPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVRNV 622
            LPP VEIVD TQHIANLTEPI+L I LQ+E+ RGYRIKT NN QDGSY IDAVFMPVRN 
Sbjct: 256  LPPSVEIVDNTQHIANLTEPINLCIELQIERKRGYRIKTLNNIQDGSYTIDAVFMPVRNA 315

Query: 621  NHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLEDN 442
            NHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN   E+N
Sbjct: 316  NHSIHSYVNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLNFENN 375

Query: 441  QDRVTLPLFSF 409
            Q +VTLPLF+F
Sbjct: 376  QHKVTLPLFTF 386



 Score =  221 bits (562), Expect(3) = 0.0
 Identities = 108/130 (83%), Positives = 117/130 (90%)
 Frame = -1

Query: 1660 MAKPIPRIGSHRNRRINSRKSARKIPKGVIYVQAGFNNTIVTVTDVRGRVVSWASAGTCG 1481
            MAK IP+IGS +N RI SRK  RKIPKGVIYVQA FNNTIVTVTDVRGRV+SW+SAG+CG
Sbjct: 1    MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60

Query: 1480 FKGAKRGTPFAAQTAAGNAIRKVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 1301
            FKG +RGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61   FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120

Query: 1300 DVTPMPHNGC 1271
            DVTP+PHNGC
Sbjct: 121  DVTPIPHNGC 130



 Score =  100 bits (250), Expect(3) = 0.0
 Identities = 56/82 (68%), Positives = 63/82 (76%), Gaps = 7/82 (8%)
 Frame = -1

Query: 418 FFFHDRLTELR*K-----IALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMK 254
           F FHDRL + + +     IALKSIFIDQLEL PRIYN LK +NIH LL+LLN SQEDLMK
Sbjct: 384 FTFHDRLLKDKLRKNKKEIALKSIFIDQLELSPRIYNCLKKSNIHTLLELLNKSQEDLMK 443

Query: 253 IEHFHIEDVKQILDTL--EKHF 194
           IEHF +EDVK IL+ L  EKHF
Sbjct: 444 IEHFRVEDVKNILNILQIEKHF 465


>ref|YP_001936549.1| RNA polymerase alpha subunit [Fagopyrum esculentum subsp. ancestrale]
            gi|166065389|gb|ABY79764.1| RNA polymerase alpha subunit
            [Fagopyrum esculentum subsp. ancestrale]
          Length = 337

 Score =  482 bits (1241), Expect(2) = e-169
 Identities = 239/253 (94%), Positives = 243/253 (96%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MV +KIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVEDKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRS  YGTCDASIC+RGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSTFYGTCDASICVRGPGGVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            II PPYVEIVDTTQHIANLTEPIDLRI LQLE+NRGYRIKTPNNFQDGSYPID VFMPVR
Sbjct: 121  IISPPYVEIVDTTQHIANLTEPIDLRIELQLERNRGYRIKTPNNFQDGSYPIDVVFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSYSNGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENF+LE
Sbjct: 181  NVNHSIHSYSNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQDRVTLPLF F
Sbjct: 241  DNQDRVTLPLFLF 253



 Score =  140 bits (354), Expect(2) = e-169
 Identities = 73/87 (83%), Positives = 76/87 (87%), Gaps = 3/87 (3%)
 Frame = -1

Query: 418 FFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FHDRL ELR    KIALKSIFIDQLELPPRIYN LKN+NIH LLDLL NSQ+D+MKIE
Sbjct: 251 FLFHDRLIELRKNKKKIALKSIFIDQLELPPRIYNCLKNSNIHTLLDLLTNSQDDIMKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINLPKKKV 167
           HF IEDVKQILDTLEKHF INLPKKKV
Sbjct: 311 HFSIEDVKQILDTLEKHFAINLPKKKV 337


>gb|AFB74287.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Didierea madagascariensis]
          Length = 333

 Score =  476 bits (1224), Expect(2) = e-160
 Identities = 233/253 (92%), Positives = 245/253 (96%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGYRIKTPNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYRIKTPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 241  DNQHKVSLPLFTF 253



 Score =  117 bits (293), Expect(2) = e-160
 Identities = 62/82 (75%), Positives = 68/82 (82%), Gaps = 3/82 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLNNS+EDL+KIE
Sbjct: 251 FTFHNRLTELSKNKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSKEDLIKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINL 182
           HF IED KQIL TLEKHF I+L
Sbjct: 311 HFRIEDAKQILGTLEKHFAIDL 332


>gb|AFB74291.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Portulacaria afra]
          Length = 333

 Score =  471 bits (1211), Expect(2) = e-159
 Identities = 231/253 (91%), Positives = 243/253 (96%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPKCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGYRIK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYRIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 241  DNQHKVSLPLFTF 253



 Score =  119 bits (299), Expect(2) = e-159
 Identities = 63/82 (76%), Positives = 69/82 (84%), Gaps = 3/82 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLNNSQEDL+++E
Sbjct: 251 FTFHNRLTELSKNKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIQME 310

Query: 247 HFHIEDVKQILDTLEKHFVINL 182
           HF IED KQILDTLEKHF INL
Sbjct: 311 HFRIEDAKQILDTLEKHFGINL 332


>gb|ADD31215.1| RNA polymerase alpha subunit protein [Ilex cornuta]
          Length = 337

 Score =  460 bits (1183), Expect(2) = e-158
 Identities = 225/253 (88%), Positives = 237/253 (93%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREK+ VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTCDASIC+RGPG VT QD
Sbjct: 61   CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTTQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQ+E+NRGY IKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQIERNRGYLIKTPNNFQDGSYPIDAVFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            N NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+ E+EN +LE
Sbjct: 181  NANHSIHSYRNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHMEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ  + LP F+F
Sbjct: 241  DNQHTIPLPPFNF 253



 Score =  127 bits (320), Expect(2) = e-158
 Identities = 67/87 (77%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
 Frame = -1

Query: 421 PFFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKI 251
           PF FHD+L +LR    KIALKSIFIDQLELPPRIYN LK +NI+ LLDLLNN QEDLMKI
Sbjct: 250 PFNFHDKLAKLRKNKKKIALKSIFIDQLELPPRIYNCLKRSNIYTLLDLLNNVQEDLMKI 309

Query: 250 EHFHIEDVKQILDTLEKHFVINLPKKK 170
           EHF IEDVKQIL  LEKHF I+LPK K
Sbjct: 310 EHFRIEDVKQILGVLEKHFAIDLPKNK 336


>gb|AFB74293.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Portulaca oleracea]
          Length = 339

 Score =  464 bits (1193), Expect(2) = e-157
 Identities = 227/252 (90%), Positives = 241/252 (95%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVR+KIRVSTRTLQWKC+ESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVRDKIRVSTRTLQWKCLESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YG C+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGICEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGYRIK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYRIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFS 412
            DNQ +V+LPLF+
Sbjct: 241  DNQHKVSLPLFT 252



 Score =  120 bits (302), Expect(2) = e-157
 Identities = 63/86 (73%), Positives = 69/86 (80%), Gaps = 3/86 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F  H+RLTEL   + K  LK IFIDQLELPPRIYN LK +NIH LLDLLNNSQEDL+KIE
Sbjct: 251 FTLHNRLTELSKNKIKTTLKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINLPKKK 170
           HFHIED KQIL TLEKHF I+L K +
Sbjct: 311 HFHIEDAKQILGTLEKHFTIDLQKNQ 336


>gb|AFB74285.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Anredera baselloides]
          Length = 335

 Score =  469 bits (1207), Expect(2) = e-157
 Identities = 229/253 (90%), Positives = 243/253 (96%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEI+LRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIILRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LT+PIDL IGLQLE+NRGYRIK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTDPIDLCIGLQLERNRGYRIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 241  DNQHKVSLPLFTF 253



 Score =  114 bits (285), Expect(2) = e-157
 Identities = 60/85 (70%), Positives = 67/85 (78%), Gaps = 3/85 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLNNSQEDL+KIE
Sbjct: 251 FTFHNRLTELSKNKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINLPKK 173
           HF +ED KQI  TLEK+F I   +K
Sbjct: 311 HFRLEDAKQIFGTLEKYFAIEFXQK 335


>gb|AFB74286.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Blossfeldia liliputana]
          Length = 329

 Score =  466 bits (1198), Expect(2) = e-157
 Identities = 231/253 (91%), Positives = 243/253 (96%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGYRIK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYRIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY  GNEKQEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+ENF+LE
Sbjct: 181  NVNHSIHSY--GNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENFHLE 238

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 239  DNQHKVSLPLFTF 251



 Score =  117 bits (294), Expect(2) = e-157
 Identities = 62/81 (76%), Positives = 67/81 (82%), Gaps = 3/81 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLN SQEDL+KIE
Sbjct: 249 FTFHNRLTELSKKKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNKSQEDLIKIE 308

Query: 247 HFHIEDVKQILDTLEKHFVIN 185
           HF IED KQILDTLEKHF I+
Sbjct: 309 HFRIEDAKQILDTLEKHFAID 329


>gb|ADD31223.1| RNA polymerase alpha subunit protein [Berberidopsis corallina]
          Length = 337

 Score =  457 bits (1176), Expect(2) = e-156
 Identities = 225/253 (88%), Positives = 237/253 (93%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREK+ VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKVTVSTRTLQWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTCDASIC+RGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCDASICVRGPGYVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            II PP VEIVD TQHIA+LTEPIDL IGLQ+E+NRGYRIKT NNFQDGSYPIDAVFMPVR
Sbjct: 121  IISPPSVEIVDNTQHIASLTEPIDLCIGLQIERNRGYRIKTLNNFQDGSYPIDAVFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            N NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ + T PLF+F
Sbjct: 241  DNQHKATFPLFTF 253



 Score =  125 bits (314), Expect(2) = e-156
 Identities = 67/89 (75%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
 Frame = -1

Query: 427 FTPFFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLM 257
           F  F FHDRL +LR    +IALK IFIDQLELPPRIYN LK +NIH L DLLNNSQEDLM
Sbjct: 248 FPLFTFHDRLAKLRKNKKEIALKYIFIDQLELPPRIYNCLKRSNIHTLSDLLNNSQEDLM 307

Query: 256 KIEHFHIEDVKQILDTLEKHFVINLPKKK 170
           KIEHF IEDVKQIL  LEKHF I+LPK K
Sbjct: 308 KIEHFRIEDVKQILGILEKHFTIDLPKNK 336


>gb|AFB74288.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Maihuenia poeppigii]
          Length = 331

 Score =  459 bits (1182), Expect(2) = e-156
 Identities = 227/253 (89%), Positives = 241/253 (95%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYST+VGIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTVVGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGY IK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY  GNEK+EILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSY--GNEKKEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 238

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 239  DNQHKVSLPLFTF 251



 Score =  120 bits (300), Expect(2) = e-156
 Identities = 63/81 (77%), Positives = 68/81 (83%), Gaps = 3/81 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLNNSQEDL+KIE
Sbjct: 249 FTFHNRLTELSKNKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKIE 308

Query: 247 HFHIEDVKQILDTLEKHFVIN 185
           HF IED KQILDTLEKHF I+
Sbjct: 309 HFRIEDAKQILDTLEKHFAID 329


>gb|ADD31229.1| RNA polymerase alpha subunit protein [Heuchera sanguinea]
          Length = 337

 Score =  455 bits (1170), Expect(2) = e-154
 Identities = 224/253 (88%), Positives = 238/253 (94%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREK+ VSTRTL+WKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKVTVSTRTLEWKCVESRADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKE+VLRSN+YGT +ASIC+ GPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEVVLRSNLYGTRNASICVSGPGYVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            II PP VEIVD TQHIA+LTEPIDL IGLQ+EKNRGYRIKTPNNFQDGSYPIDAVFMPVR
Sbjct: 121  IISPPSVEIVDNTQHIASLTEPIDLCIGLQIEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            N NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHAEEENLHLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +VTLPLF+F
Sbjct: 241  DNQHKVTLPLFTF 253



 Score =  120 bits (300), Expect(2) = e-154
 Identities = 64/86 (74%), Positives = 69/86 (80%), Gaps = 3/86 (3%)
 Frame = -1

Query: 418 FFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FHDRL +LR    +IALK IFIDQ ELPPRIY  LK +NIH LLDLLNNSQEDLMKIE
Sbjct: 251 FTFHDRLAKLRKNKKEIALKYIFIDQSELPPRIYTCLKRSNIHTLLDLLNNSQEDLMKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINLPKKK 170
           HF IEDVK+IL  LEKHF I+LPK K
Sbjct: 311 HFRIEDVKEILGFLEKHFEIDLPKNK 336


>gb|AFB74290.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Opuntia decumbens]
          Length = 323

 Score =  464 bits (1194), Expect(2) = e-153
 Identities = 229/253 (90%), Positives = 242/253 (95%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESRTDSK LYYGRFILSPLMKGQADTIG+AMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLMKGQADTIGVAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGYRIK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYRIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY  GNE QEILF EIWTNGSLTPKEALYEASRNLIDLFIPFL+AE+EN +LE
Sbjct: 181  NVNHSIHSY--GNENQEILFLEIWTNGSLTPKEALYEASRNLIDLFIPFLHAEEENLHLE 238

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 239  DNQHKVSLPLFTF 251



 Score =  107 bits (268), Expect(2) = e-153
 Identities = 57/75 (76%), Positives = 62/75 (82%), Gaps = 3/75 (4%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RLTEL   + K ALK IFIDQLELPPRIYN LK +NIH LLDLLN SQEDL+KIE
Sbjct: 249 FTFHNRLTELSKNKIKKALKYIFIDQLELPPRIYNCLKKSNIHTLLDLLNKSQEDLIKIE 308

Query: 247 HFHIEDVKQILDTLE 203
           HF IED KQILDT+E
Sbjct: 309 HFRIEDAKQILDTIE 323


>ref|YP_008814888.1| RNA polymerase alpha subunit (chloroplast) [Aralia undulata]
            gi|458599121|gb|AGG38987.1| RNA polymerase alpha subunit
            (chloroplast) [Aralia undulata]
          Length = 353

 Score =  448 bits (1153), Expect(2) = e-153
 Identities = 222/254 (87%), Positives = 235/254 (92%), Gaps = 1/254 (0%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREK+RVSTRTLQWKCVE+R DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYST+VGIQESVHEILMNLKEI+LRSN+YGTCDASICIRGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILRSNLYGTCDASICIRGPGNVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTP-NNFQDGSYPIDAVFMPV 631
            II PPYVEIVD TQHIA+L EPIDL IGLQ+E+NRGY IKTP NNFQDGSYPIDAVFMPV
Sbjct: 121  IISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPV 180

Query: 630  RNVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYL 451
            RN NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+ E+EN +L
Sbjct: 181  RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 240

Query: 450  EDNQDRVTLPLFSF 409
             DNQ  V LP F+F
Sbjct: 241  TDNQHTVPLPPFTF 254



 Score =  122 bits (307), Expect(2) = e-153
 Identities = 64/86 (74%), Positives = 72/86 (83%), Gaps = 3/86 (3%)
 Frame = -1

Query: 421 PFFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKI 251
           PF FH++LT+LR    KIALKSIFIDQ ELPPRIYN L  +NI+ L+DLLNNSQEDLMKI
Sbjct: 251 PFTFHEKLTKLRKNKKKIALKSIFIDQSELPPRIYNCLIRSNIYTLVDLLNNSQEDLMKI 310

Query: 250 EHFHIEDVKQILDTLEKHFVINLPKK 173
           EHF IEDVK+IL  LEKHF I+LPKK
Sbjct: 311 EHFRIEDVKEILGILEKHFAIDLPKK 336


>gb|AFB74289.1| DNA-directed RNA polymerase subunit alpha, partial (chloroplast)
            [Mollugo verticillata]
          Length = 333

 Score =  455 bits (1170), Expect(2) = e-153
 Identities = 225/253 (88%), Positives = 237/253 (93%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVSTRTLQWKCVESR DSK LYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTRTLQWKCVESRIDSKCLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGIQESVHEILMNLKEIVLRSN+YGTC+ASI +RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNLYGTCEASISVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGY IK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDL IPFL+AE+E  +L+
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEETSHLD 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF F
Sbjct: 241  DNQHKVSLPLFYF 253



 Score =  116 bits (290), Expect(2) = e-153
 Identities = 61/82 (74%), Positives = 67/82 (81%), Gaps = 3/82 (3%)
 Frame = -1

Query: 418 FFFHDRLTEL---R*KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F+FH+RL EL   + K ALKSIFIDQLELP RIYN LK +NIH LLDLLN SQEDL+KIE
Sbjct: 251 FYFHNRLIELSQNKKKXALKSIFIDQLELPSRIYNCLKKSNIHTLLDLLNKSQEDLIKIE 310

Query: 247 HFHIEDVKQILDTLEKHFVINL 182
           HF IED KQIL TLEKHF I+L
Sbjct: 311 HFRIEDTKQILGTLEKHFAIDL 332


>ref|YP_008999966.1| RNA polymerase alpha subunit (chloroplast) [Agrostemma githago]
            gi|555944053|gb|AGZ17957.1| RNA polymerase alpha subunit
            (chloroplast) [Agrostemma githago]
          Length = 341

 Score =  457 bits (1175), Expect(2) = e-153
 Identities = 221/253 (87%), Positives = 239/253 (94%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVR+KIRVSTRTLQWKCVESRTDSK LYYGRFILSPL+KGQADTIGIAMRRALLGE+EGT
Sbjct: 1    MVRDKIRVSTRTLQWKCVESRTDSKCLYYGRFILSPLLKGQADTIGIAMRRALLGEMEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYST+VGIQESVH+ILMNLKEI+LRSN+YGTC+ASIC+RGP CVTAQD
Sbjct: 61   CITRAKSEKIPHEYSTLVGIQESVHDILMNLKEIILRSNLYGTCEASICVRGPRCVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPID  IGLQLE+NRGY IK PNNFQDGSYPIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDFCIGLQLERNRGYHIKAPNNFQDGSYPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDL IPFL+AE+ENF+L 
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAEEENFHLA 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPL +F
Sbjct: 241  DNQPKVSLPLLTF 253



 Score =  114 bits (284), Expect(2) = e-153
 Identities = 60/80 (75%), Positives = 67/80 (83%), Gaps = 3/80 (3%)
 Frame = -1

Query: 412 FHDRLTELR*K---IALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIEHF 242
           FHDRLT+LR K   I LK IFIDQLELP RIYN LK +NIH L DLLNNSQEDL+KI+HF
Sbjct: 253 FHDRLTQLRKKKTKIVLKLIFIDQLELPSRIYNCLKKSNIHTLADLLNNSQEDLIKIKHF 312

Query: 241 HIEDVKQILDTLEKHFVINL 182
            I+DVK+ILDTLEKHF I+L
Sbjct: 313 DIDDVKKILDTLEKHFGIDL 332


>ref|NP_054966.1| RNA polymerase alpha subunit [Spinacia oleracea]
            gi|12644101|sp|P06505.2|RPOA_SPIOL RecName:
            Full=DNA-directed RNA polymerase subunit alpha;
            Short=PEP; AltName: Full=Plastid-encoded RNA polymerase
            subunit alpha; Short=RNA polymerase subunit alpha
            gi|7636139|emb|CAB88759.1| RNA polymerase alpha subunit
            [Spinacia oleracea]
          Length = 335

 Score =  449 bits (1154), Expect(2) = e-153
 Identities = 224/253 (88%), Positives = 238/253 (94%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREKIRVST+TLQWKCVESRTDSK L+YGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREKIRVSTQTLQWKCVESRTDSKCLHYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTI+GIQESVHEILMNLKEIVLRSN+YGTC+ASIC+RGP  VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTILGIQESVHEILMNLKEIVLRSNLYGTCEASICVRGPRGVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            IILPPYVEIVD TQHIA+LTEPIDL IGLQLE+NRGY IK PNNFQDGS+PIDA+FMPVR
Sbjct: 121  IILPPYVEIVDNTQHIASLTEPIDLCIGLQLERNRGYHIKAPNNFQDGSFPIDALFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            NVNHSIHSY NGNEKQEILF EIWTNGSLTPKEALYEASRNLIDL IPFL+AE EN  LE
Sbjct: 181  NVNHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALYEASRNLIDLLIPFLHAE-ENVNLE 239

Query: 447  DNQDRVTLPLFSF 409
            DNQ +V+LPLF+F
Sbjct: 240  DNQHKVSLPLFTF 252



 Score =  121 bits (303), Expect(2) = e-153
 Identities = 63/86 (73%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
 Frame = -1

Query: 418 FFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKIE 248
           F FH+RL E+R    KIALK IFIDQLELPPRIYN LK +NIH LLDLLNNSQEDL+K++
Sbjct: 250 FTFHNRLAEIRKNKKKIALKFIFIDQLELPPRIYNCLKKSNIHTLLDLLNNSQEDLIKMK 309

Query: 247 HFHIEDVKQILDTLEKHFVINLPKKK 170
           HF IEDVKQI  TLEKHFVI+L  K+
Sbjct: 310 HFRIEDVKQIFGTLEKHFVIDLKNKR 335


>ref|YP_004563899.1| RNA polymerase alpha subunit [Nelumbo lutea]
            gi|224474167|gb|ACN49356.1| RNA polymerase alpha subunit
            [Nelumbo lutea] gi|383286921|gb|AFH01570.1| RNA
            polymerase alpha subunit (chloroplast) [Nelumbo lutea]
          Length = 339

 Score =  444 bits (1141), Expect(2) = e-153
 Identities = 220/253 (86%), Positives = 236/253 (93%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVRE+I VSTRTLQWKCVESR DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MVREEIAVSTRTLQWKCVESRVDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYSTIVGI+ESVHEILMNLKEIVLRSN+YGT DA IC+RGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTIVGIEESVHEILMNLKEIVLRSNLYGTRDAFICVRGPGYVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTPNNFQDGSYPIDAVFMPVR 628
            II PP VEIVDTTQHIA+LTEPIDL IGLQ+E+NRGYR+KTPNN QDGSYPIDAVFMPVR
Sbjct: 121  IISPPSVEIVDTTQHIASLTEPIDLCIGLQIERNRGYRMKTPNNSQDGSYPIDAVFMPVR 180

Query: 627  NVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYLE 448
            N NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLI+LFIPFL A++E+  LE
Sbjct: 181  NANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLINLFIPFLDAQEEDIQLE 240

Query: 447  DNQDRVTLPLFSF 409
            DNQ++VTLP F+F
Sbjct: 241  DNQNKVTLPFFTF 253



 Score =  125 bits (315), Expect(2) = e-153
 Identities = 67/90 (74%), Positives = 73/90 (81%), Gaps = 6/90 (6%)
 Frame = -1

Query: 421 PFF-FHDRLTELR*-----KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDL 260
           PFF FHDRLT+LR      +IALK IFIDQ ELPPR YN LK +NIH LLDLLNNSQEDL
Sbjct: 249 PFFTFHDRLTKLRKNKKEKEIALKCIFIDQSELPPRTYNCLKRSNIHTLLDLLNNSQEDL 308

Query: 259 MKIEHFHIEDVKQILDTLEKHFVINLPKKK 170
           MK+EHF IEDVKQILD L+KHF I+LPK K
Sbjct: 309 MKMEHFQIEDVKQILDILQKHFAIDLPKNK 338


>ref|YP_008815149.1| RNA polymerase alpha subunit (chloroplast) [Schefflera delavayi]
            gi|458599555|gb|AGG39248.1| RNA polymerase alpha subunit
            (chloroplast) [Schefflera delavayi]
          Length = 337

 Score =  446 bits (1147), Expect(2) = e-152
 Identities = 220/254 (86%), Positives = 234/254 (92%), Gaps = 1/254 (0%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            M REK+RVSTRTLQWKCVE+R DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT
Sbjct: 1    MFREKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYST+VGIQESVHEILMNLKEI+LRSN+YGTCDASIC+RGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILRSNLYGTCDASICVRGPGYVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTP-NNFQDGSYPIDAVFMPV 631
            II PPYVEIVD TQHIA+L EPIDL IGLQ+E+NRGY IKTP NNFQDGSYPIDAVFMPV
Sbjct: 121  IISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPV 180

Query: 630  RNVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYL 451
            RN NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+ E+EN +L
Sbjct: 181  RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 240

Query: 450  EDNQDRVTLPLFSF 409
             DNQ  V LP F+F
Sbjct: 241  VDNQHTVPLPPFTF 254



 Score =  122 bits (307), Expect(2) = e-152
 Identities = 64/86 (74%), Positives = 72/86 (83%), Gaps = 3/86 (3%)
 Frame = -1

Query: 421 PFFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKI 251
           PF FH++LT+LR    KIALKSIFIDQ ELPPRIYN L  +NI+ LLDLLNNSQEDLMKI
Sbjct: 251 PFTFHEKLTKLRKNKKKIALKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKI 310

Query: 250 EHFHIEDVKQILDTLEKHFVINLPKK 173
           EHF IEDVK+IL  LEKHF I+LP+K
Sbjct: 311 EHFRIEDVKEILGILEKHFAIDLPRK 336


>ref|YP_004935584.1| RNA polymerase alpha subunit (chloroplast) [Eleutherococcus
            senticosus] gi|558602943|ref|YP_008814975.1| RNA
            polymerase alpha subunit (chloroplast) [Brassaiopsis
            hainla] gi|347448239|gb|AEO92651.1| RNA polymerase alpha
            subunit (chloroplast) [Eleutherococcus senticosus]
            gi|458599223|gb|AGG39074.1| RNA polymerase alpha subunit
            (chloroplast) [Brassaiopsis hainla]
          Length = 353

 Score =  447 bits (1151), Expect(2) = e-152
 Identities = 220/254 (86%), Positives = 235/254 (92%), Gaps = 1/254 (0%)
 Frame = -2

Query: 1167 MVREKIRVSTRTLQWKCVESRTDSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGT 988
            MVREK+RVSTRTLQWKCVE+R DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGE+EGT
Sbjct: 1    MVREKVRVSTRTLQWKCVEARADSKRLYYGRFILSPLMKGQADTIGIAMRRALLGELEGT 60

Query: 987  CITRAKFEKIPHEYSTIVGIQESVHEILMNLKEIVLRSNVYGTCDASICIRGPGCVTAQD 808
            CITRAK EKIPHEYST+VGIQESVHEILMNLKEI+LRSN+YGTCDASIC+RGPG VTAQD
Sbjct: 61   CITRAKSEKIPHEYSTLVGIQESVHEILMNLKEIILRSNLYGTCDASICVRGPGYVTAQD 120

Query: 807  IILPPYVEIVDTTQHIANLTEPIDLRIGLQLEKNRGYRIKTP-NNFQDGSYPIDAVFMPV 631
            II PPYVEIVD TQHIA+L EPIDL IGLQ+E+NRGY IKTP NNFQDGSYPIDAVFMPV
Sbjct: 121  IISPPYVEIVDNTQHIASLAEPIDLCIGLQIERNRGYLIKTPNNNFQDGSYPIDAVFMPV 180

Query: 630  RNVNHSIHSYSNGNEKQEILFFEIWTNGSLTPKEALYEASRNLIDLFIPFLYAEKENFYL 451
            RN NHSIHSY NGNEKQEILF EIWTNGSLTPKEAL+EASRNLIDLFIPFL+ E+EN +L
Sbjct: 181  RNANHSIHSYGNGNEKQEILFLEIWTNGSLTPKEALHEASRNLIDLFIPFLHTEEENLHL 240

Query: 450  EDNQDRVTLPLFSF 409
             DNQ  V LP F+F
Sbjct: 241  ADNQHTVPLPPFTF 254



 Score =  120 bits (302), Expect(2) = e-152
 Identities = 64/86 (74%), Positives = 71/86 (82%), Gaps = 3/86 (3%)
 Frame = -1

Query: 421 PFFFHDRLTELR*---KIALKSIFIDQLELPPRIYN*LKNANIHILLDLLNNSQEDLMKI 251
           PF FH++LT+LR    KIALKSIFIDQ ELPPRIYN L  +NI+ LLDLLNNSQEDLMKI
Sbjct: 251 PFTFHEKLTKLRKNKKKIALKSIFIDQSELPPRIYNCLIRSNIYTLLDLLNNSQEDLMKI 310

Query: 250 EHFHIEDVKQILDTLEKHFVINLPKK 173
           EHF IEDVK+IL  LEK F I+LPKK
Sbjct: 311 EHFRIEDVKEILGILEKRFAIDLPKK 336