BLASTX nr result
ID: Rheum21_contig00026501
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00026501
(202 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_001936563.1| hypothetical chloroplast RF1 [Fagopyrum escu... 115 8e-24
gb|ADD30921.1| putative RF1 protein [Plumbago auriculata] 105 8e-21
gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina] 96 5e-18
gb|AEX93992.1| hypothetical chloroplast RF19 (chloroplast) [Agap... 91 2e-16
ref|YP_008963750.1| hypothetical chloroplast RF19 (chloroplast) ... 90 4e-16
ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [... 90 4e-16
gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua] 90 4e-16
gb|AEX94019.1| hypothetical chloroplast RF19 (chloroplast) [Lede... 89 6e-16
gb|AEX94004.1| hypothetical chloroplast RF19 (chloroplast) [Crin... 88 1e-15
ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [... 88 1e-15
gb|AEX94040.1| hypothetical chloroplast RF19 (chloroplast) [Xant... 88 1e-15
gb|AEX94014.1| hypothetical chloroplast RF19 (chloroplast) [Knip... 87 2e-15
gb|AEX94012.1| hypothetical chloroplast RF19 (chloroplast) [Asph... 87 2e-15
gb|AEX94006.1| hypothetical chloroplast RF19 (chloroplast) [Scad... 87 3e-15
gb|AEX94002.1| hypothetical chloroplast RF19 (chloroplast) [Tulb... 87 3e-15
gb|AEX94010.1| hypothetical chloroplast RF19 (chloroplast) [Hemi... 86 4e-15
gb|AEX94028.1| hypothetical chloroplast RF19 (chloroplast) [Erio... 86 5e-15
gb|AEX93993.1| hypothetical chloroplast RF19 (chloroplast) [Anem... 86 7e-15
gb|ABY90323.1| Ycf1 [Fagopyrum homotropicum] 85 9e-15
gb|AEX94001.1| hypothetical chloroplast RF19 (chloroplast) [Gill... 85 1e-14
>ref|YP_001936563.1| hypothetical chloroplast RF1 [Fagopyrum esculentum subsp. ancestrale]
gi|189162329|ref|YP_001936575.1| hypothetical chloroplast
RF1 [Fagopyrum esculentum subsp. ancestrale]
gi|166065403|gb|ABY79778.1| hypothetical chloroplast RF1
[Fagopyrum esculentum subsp. ancestrale]
gi|166065415|gb|ABY79790.1| hypothetical chloroplast RF1
[Fagopyrum esculentum subsp. ancestrale]
Length = 1870
Score = 115 bits (287), Expect = 8e-24
Identities = 53/67 (79%), Positives = 56/67 (83%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRILSCFNSRN+NCVDKNAVFCNGNKVKTCGQF+DESKDL+RD WP
Sbjct: 1774 RRRELRILSCFNSRNTNCVDKNAVFCNGNKVKTCGQFLDESKDLDRDKMKLIQFKFFLWP 1833
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1834 NYRLEDL 1840
>gb|ADD30921.1| putative RF1 protein [Plumbago auriculata]
Length = 2069
Score = 105 bits (261), Expect = 8e-21
Identities = 50/67 (74%), Positives = 52/67 (77%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRILSC NSRNS VDKNAVFCNGNKVKTCGQF+DE KDL+RD WP
Sbjct: 1945 RRRELRILSCLNSRNSKGVDKNAVFCNGNKVKTCGQFLDERKDLDRDKKKLMKFKFFLWP 2004
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 2005 NYRLEDL 2011
>gb|ADD30913.1| putative RF1 protein [Berberidopsis corallina]
Length = 1909
Score = 95.9 bits (237), Expect = 5e-18
Identities = 44/67 (65%), Positives = 49/67 (73%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N VFCNGN +K CGQF+DESK L+R+ WP
Sbjct: 1813 RRRELRILICFNSRNRNGVDRNPVFCNGNNIKNCGQFLDESKHLDREKTKLIKVKFFLWP 1872
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1873 NYRLEDL 1879
>gb|AEX93992.1| hypothetical chloroplast RF19 (chloroplast) [Agapanthus africanus]
Length = 1722
Score = 90.9 bits (224), Expect = 2e-16
Identities = 41/67 (61%), Positives = 46/67 (68%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N +FCN N +K CGQF++E K LN D WP
Sbjct: 1626 RRRELRILICFNSRNCNVVDRNPIFCNQNNIKNCGQFLNEEKHLNTDANKFIKLKLFLWP 1685
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1686 NYRLEDL 1692
>ref|YP_008963750.1| hypothetical chloroplast RF19 (chloroplast) [Liquidambar formosana]
gi|491650429|gb|AGL13489.1| hypothetical chloroplast RF19
(chloroplast) [Liquidambar formosana]
Length = 1878
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = +1
Query: 4 RRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWPN 183
RRELRIL CFNS N N +D+N VFCN N +K+CGQF+DESK L+RD WPN
Sbjct: 1783 RRELRILICFNSMNRNDIDRNPVFCNVNNIKSCGQFLDESKHLDRDQNKLIKLKFFLWPN 1842
Query: 184 YRLEDL 201
YRLEDL
Sbjct: 1843 YRLEDL 1848
>ref|YP_008081424.1| hypothetical chloroplast RF1 (chloroplast) [Tetracentron sinense]
gi|479279261|gb|AGJ72115.1| hypothetical chloroplast RF1
(chloroplast) [Tetracentron sinense]
Length = 1895
Score = 89.7 bits (221), Expect = 4e-16
Identities = 42/67 (62%), Positives = 46/67 (68%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N VFCNG VK C QF+DE+K L+ D WP
Sbjct: 1799 RRRELRILICFNSRNRNVVDRNPVFCNGTNVKNCSQFLDENKHLDIDTNKFIKLKLFLWP 1858
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1859 NYRLEDL 1865
>gb|ADD30919.1| putative RF1 protein [Liquidambar styraciflua]
Length = 1882
Score = 89.7 bits (221), Expect = 4e-16
Identities = 41/66 (62%), Positives = 47/66 (71%)
Frame = +1
Query: 4 RRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWPN 183
RRELRIL CFNS N N +D+N VFCN N +K+CGQF+DESK L+RD WPN
Sbjct: 1787 RRELRILICFNSMNRNDIDRNPVFCNVNNIKSCGQFLDESKHLDRDQNKLIKLKFFLWPN 1846
Query: 184 YRLEDL 201
YRLEDL
Sbjct: 1847 YRLEDL 1852
>gb|AEX94019.1| hypothetical chloroplast RF19 (chloroplast) [Ledebouria cordifolia]
Length = 1802
Score = 89.0 bits (219), Expect = 6e-16
Identities = 40/67 (59%), Positives = 48/67 (71%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN + +D+N++FCN NK+K CGQF++E K LN D WP
Sbjct: 1706 RRRELRILICFNSRNWHVMDRNSIFCNQNKIKNCGQFLNEEKYLNTDANKFIKFKLFLWP 1765
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1766 NYRLEDL 1772
>gb|AEX94004.1| hypothetical chloroplast RF19 (chloroplast) [Crinum asiaticum]
Length = 1782
Score = 88.2 bits (217), Expect = 1e-15
Identities = 40/67 (59%), Positives = 46/67 (68%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNS N N VD+N++FCN N +K CGQF++E K LN D WP
Sbjct: 1686 RRRELRILICFNSGNWNVVDRNSIFCNQNNIKNCGQFLNEEKHLNTDANKFIKFKLFLWP 1745
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1746 NYRLEDL 1752
>ref|YP_008081515.1| hypothetical chloroplast RF1 (chloroplast) [Trochodendron aralioides]
gi|290489080|gb|ADD30924.1| putative RF1 protein
[Trochodendron aralioides] gi|479279354|gb|AGJ72207.1|
hypothetical chloroplast RF1 (chloroplast) [Trochodendron
aralioides]
Length = 1896
Score = 88.2 bits (217), Expect = 1e-15
Identities = 42/67 (62%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNS N N VD+N VFCNG VK C QFVDE+K L+ D WP
Sbjct: 1800 RRRELRILICFNSGNRNIVDRNPVFCNGTNVKNCSQFVDENKHLDIDTNKFIKLKFFLWP 1859
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1860 NYRLEDL 1866
>gb|AEX94040.1| hypothetical chloroplast RF19 (chloroplast) [Xanthorrhoea preissii]
Length = 1758
Score = 87.8 bits (216), Expect = 1e-15
Identities = 40/67 (59%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFN RN N VD+N +FCN N +K CGQF++E K LN D WP
Sbjct: 1662 RRRELRILICFNFRNWNVVDRNPIFCNQNNIKNCGQFLNEEKHLNTDTNKFIKFKLFFWP 1721
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1722 NYRLEDL 1728
>gb|AEX94014.1| hypothetical chloroplast RF19 (chloroplast) [Kniphofia linearifolia]
Length = 1762
Score = 87.0 bits (214), Expect = 2e-15
Identities = 40/67 (59%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N +FCN N +K C QF++E K LN D WP
Sbjct: 1666 RRRELRILVCFNSRNWNVVDRNPIFCNQNNIKNCEQFLNEEKHLNTDANKFIKFKLFLWP 1725
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1726 NYRLEDL 1732
>gb|AEX94012.1| hypothetical chloroplast RF19 (chloroplast) [Asphodeline damascena]
Length = 1710
Score = 87.0 bits (214), Expect = 2e-15
Identities = 40/67 (59%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N +FCN N +K C QF++E K LN D WP
Sbjct: 1614 RRRELRILVCFNSRNWNVVDRNPIFCNQNNIKNCEQFLNEEKHLNTDTNNFIKFKLFLWP 1673
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1674 NYRLEDL 1680
>gb|AEX94006.1| hypothetical chloroplast RF19 (chloroplast) [Scadoxus cinnabarinus]
Length = 1795
Score = 86.7 bits (213), Expect = 3e-15
Identities = 41/68 (60%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVD-KNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXW 177
RRRELRIL CFNSRN N VD +N++FCN N +K CGQF++E K LN D W
Sbjct: 1698 RRRELRILICFNSRNWNAVDDRNSIFCNQNNIKNCGQFLNEEKHLNTDANKFIKFKLFLW 1757
Query: 178 PNYRLEDL 201
PNYRLEDL
Sbjct: 1758 PNYRLEDL 1765
>gb|AEX94002.1| hypothetical chloroplast RF19 (chloroplast) [Tulbaghia violacea]
Length = 1772
Score = 86.7 bits (213), Expect = 3e-15
Identities = 39/67 (58%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELR+L CFNSRN N VD+N +FCN N +K C QF++E K LN D WP
Sbjct: 1676 RRRELRVLICFNSRNWNIVDRNPIFCNQNNIKNCEQFLNEEKHLNTDANKFIKFKLFLWP 1735
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1736 NYRLEDL 1742
>gb|AEX94010.1| hypothetical chloroplast RF19 (chloroplast) [Hemiphylacus
alatostylus]
Length = 1774
Score = 86.3 bits (212), Expect = 4e-15
Identities = 39/67 (58%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N +D+N +FCN N +K CGQF++ K LN D WP
Sbjct: 1678 RRRELRILICFNSRNWNVMDRNPIFCNQNNIKNCGQFLNGKKHLNTDANKFIKFKLFLWP 1737
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1738 NYRLEDL 1744
>gb|AEX94028.1| hypothetical chloroplast RF19 (chloroplast) [Eriospermum cervicorne]
Length = 1795
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/67 (59%), Positives = 45/67 (67%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNSRN N VD+N +F N N +K CGQF++E K LN D WP
Sbjct: 1699 RRRELRILICFNSRNWNVVDRNPIFWNQNNIKNCGQFLNEEKHLNTDANKFIKFKLFLWP 1758
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1759 NYRLEDL 1765
>gb|AEX93993.1| hypothetical chloroplast RF19 (chloroplast) [Anemarrhena
asphodeloides]
Length = 1778
Score = 85.5 bits (210), Expect = 7e-15
Identities = 38/67 (56%), Positives = 46/67 (68%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELRIL CFNS++ N VD+N +FCN N +K CGQF++E K LN + WP
Sbjct: 1682 RRRELRILICFNSKSWNVVDRNPIFCNQNNIKNCGQFLNEEKHLNTEANKFIKFKLFLWP 1741
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1742 NYRLEDL 1748
>gb|ABY90323.1| Ycf1 [Fagopyrum homotropicum]
Length = 81
Score = 85.1 bits (209), Expect = 9e-15
Identities = 38/51 (74%), Positives = 40/51 (78%)
Frame = +1
Query: 49 NCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWPNYRLEDL 201
NCVDKNAVFCNGNKVKTCGQF+DESKDL+RD WPNYRLEDL
Sbjct: 1 NCVDKNAVFCNGNKVKTCGQFLDESKDLDRDKMKLIQFKFFLWPNYRLEDL 51
>gb|AEX94001.1| hypothetical chloroplast RF19 (chloroplast) [Gilliesia graminea]
Length = 1777
Score = 84.7 bits (208), Expect = 1e-14
Identities = 38/67 (56%), Positives = 44/67 (65%)
Frame = +1
Query: 1 RRRELRILSCFNSRNSNCVDKNAVFCNGNKVKTCGQFVDESKDLNRDXXXXXXXXXXXWP 180
RRRELR+ CFNSRN N VD+N +FCN N +K GQF++E K LN D WP
Sbjct: 1681 RRRELRVFICFNSRNCNIVDRNPIFCNQNNIKNYGQFLNEEKHLNTDAKNCMKFKLFLWP 1740
Query: 181 NYRLEDL 201
NYRLEDL
Sbjct: 1741 NYRLEDL 1747