BLASTX nr result
ID: Rheum21_contig00025517
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00025517
(528 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADZ93628.1| photosystem II CP43 protein [Juncus effusus] 62 1e-07
gb|AFA27431.1| photosystem II CP43 chlorophyll apoprotein [Juncu... 62 1e-07
gb|AEX01597.1| photosystem II CP43 [Maundia triglochinoides] 62 1e-07
gb|AEX95695.1| photosystem II CP43 chlorophyll apoprotein (chlor... 62 1e-07
gb|AAS60064.1| photosystem II CP43 protein [Doryanthes palmeri] 62 1e-07
gb|AAN32608.1| photosystem II CP43 protein [Narcissus elegans] 62 1e-07
gb|ADO33444.1| photosystem II CP43 chlorophyll apoprotein [Smila... 60 2e-07
gb|ABR21927.1| photosystem II CP43 protein [Bouteloua curtipendula] 60 2e-07
ref|NP_039367.1| photosystem II 44 kDa protein [Oryza sativa Jap... 60 3e-07
emb|CAA32263.1| unnamed protein product [Hordeum vulgare subsp. ... 60 3e-07
ref|YP_008993961.1| photosystem II 44 kDa protein (chloroplast) ... 60 3e-07
ref|YP_008855077.1| photosystem II CP43 chlorophyll apoprotein (... 60 3e-07
ref|YP_008815737.1| photosystem II CP43 chlorophyll apoprotein [... 60 3e-07
ref|YP_008239158.1| photosystem II CP43 chlorophyll apoprotein (... 60 3e-07
ref|YP_008080490.1| photosystem II protein C (chloroplast) [Phar... 60 3e-07
gb|AGC38232.1| photosystem II 44 kDa protein (chloroplast) [Cryp... 60 3e-07
ref|YP_054615.1| photosystem II 44 kDa protein [Saccharum hybrid... 60 3e-07
dbj|BAD17353.1| rice chloroplast PSII 43kDa protein [Oryza sativ... 60 3e-07
sp|P10804.1|PSBC_SECCE RecName: Full=Photosystem II CP43 chlorop... 60 3e-07
emb|CAC35458.1| unnamed protein product [Secale cereale] 60 3e-07
>gb|ADZ93628.1| photosystem II CP43 protein [Juncus effusus]
Length = 418
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AFA27431.1| photosystem II CP43 chlorophyll apoprotein [Juncus effusus]
Length = 473
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AEX01597.1| photosystem II CP43 [Maundia triglochinoides]
Length = 418
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AEX95695.1| photosystem II CP43 chlorophyll apoprotein (chloroplast)
[Doryanthes palmeri]
Length = 473
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AAS60064.1| photosystem II CP43 protein [Doryanthes palmeri]
Length = 418
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AAN32608.1| photosystem II CP43 protein [Narcissus elegans]
Length = 418
Score = 61.6 bits (148), Expect = 1e-07
Identities = 28/34 (82%), Positives = 30/34 (88%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTFALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFALAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|ADO33444.1| photosystem II CP43 chlorophyll apoprotein [Smilax china]
Length = 513
Score = 60.5 bits (145), Expect = 2e-07
Identities = 30/40 (75%), Positives = 32/40 (80%)
Frame = -2
Query: 398 RGNAL*FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
RGN FNGT ALAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 53 RGNL--FNGTLALAGRDQETTGFAWWAGNARLINLSGKLL 90
>gb|ABR21927.1| photosystem II CP43 protein [Bouteloua curtipendula]
Length = 418
Score = 60.5 bits (145), Expect = 2e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNAXLINLSGKLL 50
>ref|NP_039367.1| photosystem II 44 kDa protein [Oryza sativa Japonica Group]
gi|50233955|ref|YP_052733.1| photosystem II 44 kDa
protein [Oryza nivara] gi|109156585|ref|YP_654204.1|
photosystem II 44 kDa protein [Oryza sativa Indica
Group] gi|378758401|ref|YP_005296405.1| psbC gene
product (chloroplast) [Oryza meridionalis]
gi|386799157|ref|YP_006280746.1| psbC gene product
(chloroplast) [Oryza rufipogon]
gi|556927069|ref|YP_008757423.1| photosystem II CP43
chlorophyll apoprotein (chloroplast) [Oryza rufipogon]
gi|68565738|sp|Q6ENJ0.1|PSBC_ORYNI RecName:
Full=Photosystem II CP43 chlorophyll apoprotein;
AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|148886634|sp|P0C365.1|PSBC_ORYSA
RecName: Full=Photosystem II CP43 chlorophyll
apoprotein; AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|148886635|sp|P0C366.1|PSBC_ORYSI
RecName: Full=Photosystem II CP43 chlorophyll
apoprotein; AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|148886636|sp|P0C367.1|PSBC_ORYSJ
RecName: Full=Photosystem II CP43 chlorophyll
apoprotein; AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|11965|emb|CAA34014.1| PSII 43kDa
protein [Oryza sativa Japonica Group]
gi|42795477|gb|AAS46044.1| photosystem II 44 kDa protein
[Oryza sativa Indica Group] gi|42795543|gb|AAS46109.1|
photosystem II 44 kDa protein [Oryza sativa Japonica
Group] gi|42795607|gb|AAS46172.1| photosystem II 44 kDa
protein [Oryza sativa Japonica Group]
gi|49614979|dbj|BAD26762.1| PSII 43kDa protein [Oryza
nivara] gi|290790562|gb|ADD62822.1| photosystem II CP43
chlorophyll apoprotein [Oryza sativa Japonica Group]
gi|290790631|gb|ADD62890.1| photosystem II CP43
chlorophyll apoprotein [Oryza meridionalis]
gi|290790700|gb|ADD62958.1| photosystem II CP43
chlorophyll apoprotein [Oryza australiensis]
gi|336326825|gb|AEI53003.1| photosystem II CP43
chlorophyll apoprotein (chloroplast) [Oryza
meridionalis] gi|336326901|gb|AEI53078.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza
rufipogon] gi|336326979|gb|AEI53155.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza
rufipogon] gi|353685041|gb|AER12806.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza sativa
Indica Group] gi|353685130|gb|AER12894.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza sativa
Indica Group] gi|552954461|gb|AGY48929.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza
rufipogon] gi|555945974|gb|AGZ19200.1| photosystem II
CP43 chlorophyll apoprotein (chloroplast) [Oryza
rufipogon]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>emb|CAA32263.1| unnamed protein product [Hordeum vulgare subsp. vulgare]
Length = 309
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_008993961.1| photosystem II 44 kDa protein (chloroplast) [Pharus lappulaceus]
gi|449020245|gb|AGE65742.1| photosystem II 44 kDa
protein (chloroplast) [Pharus lappulaceus]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_008855077.1| photosystem II CP43 chlorophyll apoprotein (chloroplast)
[Phragmites australis] gi|558614276|gb|AHA82286.1|
photosystem II CP43 chlorophyll apoprotein (chloroplast)
[Phragmites australis]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_008815737.1| photosystem II CP43 chlorophyll apoprotein [Setaria italica]
gi|555298029|gb|AGZ13131.1| photosystem II CP43
chlorophyll apoprotein [Setaria italica]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_008239158.1| photosystem II CP43 chlorophyll apoprotein (chloroplast) [Secale
cereale] gi|521301256|gb|AGP51055.1| photosystem II CP43
chlorophyll apoprotein (chloroplast) [Secale cereale]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_008080490.1| photosystem II protein C (chloroplast) [Pharus latifolius]
gi|336280789|gb|AEI29077.1| photosystem II protein C
(chloroplast) [Pharus latifolius]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>gb|AGC38232.1| photosystem II 44 kDa protein (chloroplast) [Cryptochloa
strictiflora]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>ref|YP_054615.1| photosystem II 44 kDa protein [Saccharum hybrid cultivar NCo 310]
gi|75255223|sp|Q6ENY0.1|PSBC_SACOF RecName:
Full=Photosystem II CP43 chlorophyll apoprotein;
AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|110826011|sp|P0C158.1|PSBC_SACHY
RecName: Full=Photosystem II CP43 chlorophyll
apoprotein; AltName: Full=PSII 43 kDa protein; AltName:
Full=Photosystem II 44 kDa reaction center protein;
AltName: Full=Protein CP-43; AltName: Full=Protein P6;
Flags: Precursor gi|49659496|dbj|BAD27277.1| PSII 44kD
protein [Saccharum hybrid cultivar NCo 310]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>dbj|BAD17353.1| rice chloroplast PSII 43kDa protein [Oryza sativa Japonica Group]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>sp|P10804.1|PSBC_SECCE RecName: Full=Photosystem II CP43 chlorophyll apoprotein; AltName:
Full=PSII 43 kDa protein; AltName: Full=Photosystem II
44 kDa reaction center protein; AltName: Full=Protein
CP-43; AltName: Full=Protein P6; Flags: Precursor
gi|12228|emb|CAA31744.1| putative CP-a2 protein [Secale
cereale]
Length = 473
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 17 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 50
>emb|CAC35458.1| unnamed protein product [Secale cereale]
Length = 461
Score = 60.1 bits (144), Expect = 3e-07
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = -2
Query: 380 FNGTFALAGRDQETTAFAWWAENALQLHLSGKLL 279
FNGTF LAGRDQETT FAWWA NA ++LSGKLL
Sbjct: 5 FNGTFVLAGRDQETTGFAWWAGNARLINLSGKLL 38