BLASTX nr result
ID: Rheum21_contig00024462
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00024462
(437 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI20961.3| unnamed protein product [Vitis vinifera] 105 8e-21
ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containi... 105 8e-21
gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus pe... 102 4e-20
gb|ESW09151.1| hypothetical protein PHAVU_009G104600g [Phaseolus... 102 5e-20
ref|XP_002324255.1| pentatricopeptide repeat-containing family p... 102 5e-20
ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containi... 101 9e-20
ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containi... 100 2e-19
ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citr... 100 2e-19
ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containi... 99 4e-19
ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containi... 89 8e-16
gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis] 88 1e-15
ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containi... 86 5e-15
ref|XP_003603587.1| Pentatricopeptide repeat-containing protein ... 84 3e-14
ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containi... 83 3e-14
ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containi... 81 2e-13
ref|XP_002884209.1| pentatricopeptide repeat-containing protein ... 80 3e-13
ref|XP_002516590.1| pentatricopeptide repeat-containing protein,... 80 3e-13
ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis th... 78 1e-12
gb|EPS62011.1| hypothetical protein M569_12781, partial [Genlise... 77 2e-12
ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 77 3e-12
>emb|CBI20961.3| unnamed protein product [Vitis vinifera]
Length = 553
Score = 105 bits (261), Expect = 8e-21
Identities = 46/101 (45%), Positives = 73/101 (72%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
++ + IR++ED+F+ +L DC N EL KIHAHI+K SL+QS FL TKM+D+C+++ +
Sbjct: 49 KLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETE 108
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA +F + +P F+YNAMIRA + K Y L I+++K+++
Sbjct: 109 YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQML 149
>ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
[Vitis vinifera]
Length = 537
Score = 105 bits (261), Expect = 8e-21
Identities = 46/101 (45%), Positives = 73/101 (72%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
++ + IR++ED+F+ +L DC N EL KIHAHI+K SL+QS FL TKM+D+C+++ +
Sbjct: 4 KLRALKIREMEDMFVPILKDCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHYGETE 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA +F + +P F+YNAMIRA + K Y L I+++K+++
Sbjct: 64 YANLLFKGVADPNAFLYNAMIRAYKHNKVYVLAITVYKQML 104
>gb|EMJ28472.1| hypothetical protein PRUPE_ppa017736mg [Prunus persica]
Length = 544
Score = 102 bits (255), Expect = 4e-20
Identities = 47/100 (47%), Positives = 71/100 (71%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
RI + S+R++ED F+ L +CKNT L KIHA I+K SL+QS FL TKM+D+C N
Sbjct: 4 RISAVSVRELEDFFVPTLLNCKNTSGLKKIHAQIVKFSLSQSNFLVTKMVDVCDNSGNLG 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKEL 32
YA+ +F + EP +F++NAMIRA + + Y+L ++L+K++
Sbjct: 64 YASLLFKQVLEPNVFLFNAMIRAYTHHQMYDLAVTLYKQM 103
>gb|ESW09151.1| hypothetical protein PHAVU_009G104600g [Phaseolus vulgaris]
Length = 527
Score = 102 bits (254), Expect = 5e-20
Identities = 48/106 (45%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Frame = -2
Query: 313 IRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIF 134
+R++E+ F+ L C EL K+HAHI+K SL+QS FLATKM+D+C N DYA IF
Sbjct: 3 VRELENRFVTTLRTCSKISELKKLHAHIVKLSLSQSNFLATKMLDLCDNLGHVDYATLIF 62
Query: 133 DDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDL--RACPDK 2
++ +P +F YNA+IR C + K+ L I++F E++ A PDK
Sbjct: 63 QNLEDPNVFSYNAIIRTCTHNHKHSLAITVFNEMLRHAMKSALPDK 108
>ref|XP_002324255.1| pentatricopeptide repeat-containing family protein [Populus
trichocarpa] gi|222865689|gb|EEF02820.1|
pentatricopeptide repeat-containing family protein
[Populus trichocarpa]
Length = 547
Score = 102 bits (254), Expect = 5e-20
Identities = 48/101 (47%), Positives = 68/101 (67%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
RIG+ IR++E+ F+ +L +CKN EL IHAH+IK SL+QS FL TKM+D+C
Sbjct: 4 RIGALKIRELENFFVPILQNCKNIVELKSIHAHVIKYSLSQSSFLVTKMVDVCDKTEDLG 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA+ +F + EP ++YNAMIRA + K Y L I +KE++
Sbjct: 64 YASLLFKQVKEPNGYLYNAMIRAHTHNKVYALAILFYKEML 104
>ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Vitis vinifera]
Length = 541
Score = 101 bits (252), Expect = 9e-20
Identities = 45/101 (44%), Positives = 72/101 (71%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
++ + IR++ED+F+ +L +C N EL KIHAHI+K SL+QS FL TKM+D+C++ +
Sbjct: 4 KLRALKIREMEDIFVPILKNCPNIVELKKIHAHIVKFSLSQSSFLVTKMVDVCNHHAETE 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA +F + +P F+YNAMIRA + K Y L I+++K+++
Sbjct: 64 YANLLFKRVADPNAFLYNAMIRAYKHNKVYVLAITVYKQML 104
>ref|XP_006476161.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Citrus sinensis]
Length = 541
Score = 100 bits (250), Expect = 2e-19
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Frame = -2
Query: 340 VVGRIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFR 161
+ RIG+ SI+++ED F+ +L C+N EL KIH I+K L+QS FL TKMID+C++
Sbjct: 1 MAARIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60
Query: 160 AADYAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDLRA----CPDK 2
YA+ +F + EP +F+YNAMIRA Y L I+L+K+++ D R PDK
Sbjct: 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117
>ref|XP_006450596.1| hypothetical protein CICLE_v10010742mg [Citrus clementina]
gi|557553822|gb|ESR63836.1| hypothetical protein
CICLE_v10010742mg [Citrus clementina]
Length = 605
Score = 100 bits (250), Expect = 2e-19
Identities = 52/117 (44%), Positives = 75/117 (64%), Gaps = 4/117 (3%)
Frame = -2
Query: 340 VVGRIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFR 161
+ RIG+ SI+++ED F+ +L C+N EL KIH I+K L+QS FL TKMID+C++
Sbjct: 1 MAARIGALSIKELEDRFVPILQSCENLIELKKIHTQILKYLLSQSNFLVTKMIDVCNSGG 60
Query: 160 AADYAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDLRA----CPDK 2
YA+ +F + EP +F+YNAMIRA Y L I+L+K+++ D R PDK
Sbjct: 61 DLAYASLLFKQVKEPNVFLYNAMIRAYTNNHLYGLAINLYKQMLRDPRTGSLILPDK 117
>ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 535
Score = 99.4 bits (246), Expect = 4e-19
Identities = 46/104 (44%), Positives = 66/104 (63%)
Frame = -2
Query: 313 IRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIF 134
+R++E+ F+ L +C EL KIHAHI+K SL+QS FL TKM+D+C N DYA IF
Sbjct: 3 VRELENRFVTTLRNCPKIAELKKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIF 62
Query: 133 DDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDLRACPDK 2
+ P +F YNA+IR + K+ L I++F +++ A PDK
Sbjct: 63 QQLENPNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDK 106
>ref|XP_004292867.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Fragaria vesca subsp. vesca]
Length = 544
Score = 88.6 bits (218), Expect = 8e-16
Identities = 42/101 (41%), Positives = 67/101 (66%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
R + +IR++E+ F+ L +CK L KIHA I+K SL+QS FL TKM+D+C +
Sbjct: 4 RTAALTIRELENSFVPKLLNCKTKPGLKKIHAQIVKLSLSQSNFLVTKMVDVCDYSGNVN 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA+ +F + EP +F++NAMIRA + Y+ I+L+K+++
Sbjct: 64 YASLLFKQVLEPNVFLFNAMIRAYTHNYVYDSAIALYKQML 104
>gb|EXC32781.1| hypothetical protein L484_019895 [Morus notabilis]
Length = 549
Score = 88.2 bits (217), Expect = 1e-15
Identities = 39/99 (39%), Positives = 65/99 (65%)
Frame = -2
Query: 316 SIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATI 137
+IR++E+LFL +C + K L KIHA I+K SL+QS FL TKM+D+C +YA+ +
Sbjct: 9 TIRELENLFLPTFRNCTHLKTLKKIHALIVKFSLSQSNFLVTKMVDVCDKTGQVEYASLL 68
Query: 136 FDDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDL 20
F + + +F+YNA+I+A +Y L + L+K+++ +
Sbjct: 69 FQQVVQGNVFLYNAIIKAYANNSRYSLALILYKQMVSQI 107
>ref|XP_004501200.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like isoform X1 [Cicer arietinum]
gi|502132029|ref|XP_004501201.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X2 [Cicer arietinum]
gi|502132032|ref|XP_004501202.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X3 [Cicer arietinum]
gi|502132034|ref|XP_004501203.1| PREDICTED:
pentatricopeptide repeat-containing protein
At2g20540-like isoform X4 [Cicer arietinum]
Length = 553
Score = 85.9 bits (211), Expect = 5e-15
Identities = 40/100 (40%), Positives = 62/100 (62%)
Frame = -2
Query: 328 IGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADY 149
+G+ IRQ+E+ ++ L C +L KIHAH++K SL+QS FLATKM+D C N Y
Sbjct: 1 MGTIFIRQLENRYVASLKSCFRIAQLKKIHAHVVKLSLSQSNFLATKMLDSCDNMGYVGY 60
Query: 148 AATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
A +F + P F YNA+IR + + + L I++F +++
Sbjct: 61 ATLLFQQLLHPNNFSYNAIIRTYTHNRHHSLAITIFIQML 100
>ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492635|gb|AES73838.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 568
Score = 83.6 bits (205), Expect = 3e-14
Identities = 37/95 (38%), Positives = 59/95 (62%)
Frame = -2
Query: 313 IRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIF 134
IR++E+ ++ L +C +L KIHAH++K SL+QS FL TKM+D C N YA +F
Sbjct: 6 IRELENRYITSLKNCFKITQLKKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLF 65
Query: 133 DDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
+ P +F YNA+IR + + + IS+F +++
Sbjct: 66 KQLLHPNIFTYNAIIRTYAHNRHHSSAISVFVQML 100
>ref|XP_006360941.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum tuberosum]
Length = 536
Score = 83.2 bits (204), Expect = 3e-14
Identities = 37/101 (36%), Positives = 68/101 (67%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
+ G ++ +ED+F+ +L +CK+T L KIHA I+K SL+QS +L TKM++IC +
Sbjct: 4 KFGFLTVNGLEDMFIPVLKNCKSTVFLKKIHAQIVKFSLSQSSYLVTKMVEICDKNGEIE 63
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA +F + +P ++YN++IRA + ++Y I+++K+++
Sbjct: 64 YAKLLFKQVEDPNNYLYNSIIRAYTHKQRYISCINVYKQMM 104
>ref|XP_004247963.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Solanum lycopersicum]
Length = 534
Score = 80.9 bits (198), Expect = 2e-13
Identities = 36/101 (35%), Positives = 65/101 (64%)
Frame = -2
Query: 331 RIGSFSIRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAAD 152
+ G ++ +ED+F+ +L +CK++ L KIHA I+K SL QS +L TKM++IC +
Sbjct: 2 KFGFLTVNGLEDMFIAVLKNCKSSIFLKKIHAQIVKFSLTQSSYLVTKMVEICDKIGEIE 61
Query: 151 YAATIFDDITEPILFVYNAMIRACCYGKKYELGISLFKELI 29
YA +F + P ++YN++IRA + +Y I+++K+++
Sbjct: 62 YANLLFKQVEHPNNYLYNSIIRAYTHKHRYISCINVYKQMM 102
>ref|XP_002884209.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330049|gb|EFH60468.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 534
Score = 80.1 bits (196), Expect = 3e-13
Identities = 40/104 (38%), Positives = 62/104 (59%)
Frame = -2
Query: 313 IRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIF 134
IR+VE+ F+ L K+ E KIHA II L+QS F+ TKM+D+C DYA +F
Sbjct: 6 IREVENYFIPFLQRVKSRNEWKKIHACIIVHGLSQSSFMVTKMVDLCDKLGDMDYATRLF 65
Query: 133 DDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDLRACPDK 2
+ ++ P +F+YN++IRA + Y I ++K+L+ PD+
Sbjct: 66 NQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKTIEFPDR 109
>ref|XP_002516590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223544410|gb|EEF45931.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 80.1 bits (196), Expect = 3e-13
Identities = 36/80 (45%), Positives = 53/80 (66%)
Frame = -2
Query: 256 ELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIFDDITEPILFVYNAMIRACC 77
EL K HA +IK +L+QS FL TKMID+C DYA+ +F ++ +P ++YNAMIRAC
Sbjct: 3 ELKKNHALVIKYALSQSNFLVTKMIDVCDRNEDMDYASFLFKEVIDPNAYLYNAMIRACT 62
Query: 76 YGKKYELGISLFKELIEDLR 17
+ Y L I +K+++ + R
Sbjct: 63 HNSMYSLTIDFYKQMLREYR 82
>ref|NP_179644.1| mitochondrial editing factor 21 [Arabidopsis thaliana]
gi|75337271|sp|Q9SIL5.1|PP165_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g20540 gi|4586036|gb|AAD25654.1| unknown protein
[Arabidopsis thaliana] gi|67633530|gb|AAY78689.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana] gi|330251931|gb|AEC07025.1| mitochondrial
editing factor 21 [Arabidopsis thaliana]
Length = 534
Score = 77.8 bits (190), Expect = 1e-12
Identities = 39/104 (37%), Positives = 61/104 (58%)
Frame = -2
Query: 313 IRQVEDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIF 134
IR+VE+ F+ L K+ E KI+A II L+QS F+ TKM+D C DYA +F
Sbjct: 6 IREVENYFIPFLQRVKSRNEWKKINASIIIHGLSQSSFMVTKMVDFCDKIEDMDYATRLF 65
Query: 133 DDITEPILFVYNAMIRACCYGKKYELGISLFKELIEDLRACPDK 2
+ ++ P +F+YN++IRA + Y I ++K+L+ PD+
Sbjct: 66 NQVSNPNVFLYNSIIRAYTHNSLYCDVIRIYKQLLRKSFELPDR 109
>gb|EPS62011.1| hypothetical protein M569_12781, partial [Genlisea aurea]
Length = 488
Score = 77.0 bits (188), Expect = 2e-12
Identities = 38/91 (41%), Positives = 55/91 (60%)
Frame = -2
Query: 301 EDLFLLLLNDCKNTKELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIFDDIT 122
E LF+ LL CK+T +L +IH + K SL +S FL TKM+D+C +YA +F +
Sbjct: 1 EALFISLLRKCKSTSDLKRIHTQMEKHSLFRSSFLVTKMLDVCDQNGDIEYAGFLFRKVP 60
Query: 121 EPILFVYNAMIRACCYGKKYELGISLFKELI 29
EP +F+YNA+IR Y L I +K+L+
Sbjct: 61 EPNIFLYNAVIRVYTNNGYYLLAIDAYKQLL 91
>ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Vitis vinifera]
Length = 515
Score = 76.6 bits (187), Expect = 3e-12
Identities = 35/76 (46%), Positives = 53/76 (69%)
Frame = -2
Query: 256 ELCKIHAHIIKSSLAQSGFLATKMIDICSNFRAADYAATIFDDITEPILFVYNAMIRACC 77
EL KIHAH++K SL+ S FL TKM+D+C++ +YA +F + +P F+YNAMIRA
Sbjct: 3 ELKKIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYK 62
Query: 76 YGKKYELGISLFKELI 29
+ K Y L I++ K+++
Sbjct: 63 HNKVYILAITVHKQML 78