BLASTX nr result
ID: Rheum21_contig00024319
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00024319
(408 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AEX61039.1| reverse transcriptase, partial [Chenopodium quinoa] 87 3e-15
gb|EPS62921.1| hypothetical protein M569_11867 [Genlisea aurea] 81 1e-13
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 80 4e-13
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 79 5e-13
emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera] 79 5e-13
gb|ACB45081.1| putative polyprotein [Solanum habrochaites] 79 6e-13
gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsi... 79 6e-13
emb|CAB10526.1| retrotransposon like protein [Arabidopsis thalia... 79 8e-13
gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsi... 79 8e-13
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 78 1e-12
ref|XP_006599979.1| PREDICTED: uncharacterized protein LOC102661... 77 2e-12
gb|AAB82754.1| retrofit [Oryza longistaminata] 77 2e-12
emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera] 77 2e-12
ref|XP_004235124.1| PREDICTED: uncharacterized protein LOC101260... 77 2e-12
emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera] 77 2e-12
gb|ABH07899.1| putative polyprotein [Solanum lycopersicum] 77 2e-12
gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula] 76 4e-12
pir||T14592 reverse transcriptase Tbv4 - beet Ty1-copia-like ret... 76 4e-12
gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidop... 76 4e-12
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa] 76 5e-12
>gb|AEX61039.1| reverse transcriptase, partial [Chenopodium quinoa]
Length = 87
Score = 86.7 bits (213), Expect = 3e-15
Identities = 39/64 (60%), Positives = 47/64 (73%)
Frame = -3
Query: 274 HGFIDEEVYKLPHASYTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASD 95
HG++DEEVY +P YT+A P QVCRL +S YGLKQAS WN ELS+FL GY +S D
Sbjct: 5 HGYLDEEVYMIPPPGYTKALPGQVCRLKKSIYGLKQASRCWNKELSRFLIDFGYSQSKQD 64
Query: 94 YSLF 83
YS+F
Sbjct: 65 YSMF 68
>gb|EPS62921.1| hypothetical protein M569_11867 [Genlisea aurea]
Length = 1264
Score = 81.3 bits (199), Expect = 1e-13
Identities = 44/118 (37%), Positives = 62/118 (52%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
QI G D+ +P+ K + + LD NN LHGF+D EVY Y
Sbjct: 960 QIPGVDFTDVFAPVAKITTVRLFIALAAQRSWPLHQLDINNAFLHGFLDTEVYMCLPPGY 1019
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLIAF 53
++A+P +VCRL+RS YGLKQA +W+ EL L ++G+ SD LF + G + F
Sbjct: 1020 SDARPPKVCRLLRSLYGLKQAPRRWHHELKHALLSIGFVSCISDPCLFTSHVDGDLTF 1077
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 79.7 bits (195), Expect = 4e-13
Identities = 50/116 (43%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Frame = -3
Query: 397 GKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHASYTE 221
G DY+ T SP+VK + ++ LD N LHGF++EEVY K P E
Sbjct: 1013 GIDYEDTFSPVVKAATIRIVLSIAVSRGWCMRQLDVQNAFLHGFLEEEVYMKQPPGYEDE 1072
Query: 220 AQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLIAF 53
+ P VC+L ++ YGLKQA W LSK L+ LG+Q S D SLFF GLI F
Sbjct: 1073 SFPGYVCKLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIF 1128
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 79.3 bits (194), Expect = 5e-13
Identities = 46/116 (39%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Frame = -3
Query: 397 GKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHASYTE 221
G DY+ T SP+VK + ++ LD N+ LHGF++EEVY + P +
Sbjct: 1014 GIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNDFLHGFLEEEVYMQQPPGFESS 1073
Query: 220 AQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLIAF 53
++P VC+L ++ YGLKQA W LSK L LG++ S +D SLFF G+I F
Sbjct: 1074 SKPDYVCKLNKALYGLKQAPRAWYSRLSKKLTELGFEASKADTSLFFLNKGGIIMF 1129
>emb|CAN67762.1| hypothetical protein VITISV_040650 [Vitis vinifera]
Length = 1316
Score = 79.3 bits (194), Expect = 5e-13
Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 1/117 (0%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHAS 230
QIEG DY+ SP+ K E+ +D NN LHG ++EEVY KLP
Sbjct: 878 QIEGIDYQEXFSPVAKMTSVRCFLAVXVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEG- 936
Query: 229 YTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLI 59
+ +VC+L +S YGLKQAS QW +L+ L G+Q+S +DYSL F Y +G I
Sbjct: 937 FKATGKNKVCKLQKSLYGLKQASRQWFAKLTTALKEYGFQQSLADYSL-FTYRRGNI 992
>gb|ACB45081.1| putative polyprotein [Solanum habrochaites]
Length = 559
Score = 79.0 bits (193), Expect = 6e-13
Identities = 46/109 (42%), Positives = 65/109 (59%), Gaps = 2/109 (1%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHA- 233
Q EG DY+ T SP+VK + ++Q +D N L G + EEVY ++P
Sbjct: 404 QQEGLDYQDTFSPVVKMVTVRTVLTLAASKGWDVQQMDVYNAFLQGDLVEEVYMQIPQGF 463
Query: 232 SYTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSL 86
S+ A + VC+L++S YGLKQAS QWNV+L++ L G+Q+S DYSL
Sbjct: 464 SHVHAGDQPVCKLLKSLYGLKQASRQWNVKLTQALLVAGFQQSHLDYSL 512
>gb|AAD19784.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1501
Score = 79.0 bits (193), Expect = 6e-13
Identities = 42/108 (38%), Positives = 59/108 (54%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q+EG+DYK T +P+V+ E+ +D +N LHG ++EEVY +
Sbjct: 1063 QVEGEDYKETFAPVVRMTTVRTLLRNVAANQWEVYQMDVHNAFLHGDLEEEVYMKLPPGF 1122
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLF 83
+ P +VCRL +S YGLKQA W +LS L G+ +S DYSLF
Sbjct: 1123 RHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDSLLRFGFVQSYEDYSLF 1170
>emb|CAB10526.1| retrotransposon like protein [Arabidopsis thaliana]
gi|7268497|emb|CAB78748.1| retrotransposon like protein
[Arabidopsis thaliana]
Length = 1433
Score = 78.6 bits (192), Expect = 8e-13
Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 5/121 (4%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q EG DY+ T SP+ K + LD +N L+G +DEE+Y Y
Sbjct: 988 QEEGLDYEETFSPVAKLTSVRMMLLLAAKMKWSVHQLDISNAFLNGDLDEEIYMKIPPGY 1047
Query: 226 TEA-----QPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGL 62
+ P +CRL +S YGLKQAS QW ++LS L +G+Q+S +D++LF Y G+
Sbjct: 1048 ADLVGEALPPHAICRLHKSIYGLKQASRQWYLKLSNTLKGMGFQKSNADHTLFIKYANGV 1107
Query: 61 I 59
+
Sbjct: 1108 L 1108
>gb|AAD23883.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1156
Score = 78.6 bits (192), Expect = 8e-13
Identities = 42/108 (38%), Positives = 56/108 (51%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q+EG+DY T +P+VK E+ +D NN LHG +DEEVY +
Sbjct: 710 QVEGEDYNETFAPVVKMTTVRTLLRLVAANQWEVYQMDVNNAFLHGDLDEEVYMKLPPGF 769
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLF 83
+ P +VCRL +S YGLKQA W +LS L G+ + DYS F
Sbjct: 770 RHSHPDKVCRLRKSLYGLKQAPRCWFKKLSDALLRFGFVQGHEDYSFF 817
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 77.8 bits (190), Expect = 1e-12
Identities = 46/116 (39%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = -3
Query: 397 GKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHASYTE 221
G DY+ T SP+VK + ++ LD N LHGF++EEVY + P +
Sbjct: 1002 GIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESF 1061
Query: 220 AQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLIAF 53
++P VC+L ++ YGLKQA W LSK L LG++ S +D SLFF G+I F
Sbjct: 1062 SKPNYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMF 1117
>ref|XP_006599979.1| PREDICTED: uncharacterized protein LOC102661893 [Glycine max]
Length = 328
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/72 (52%), Positives = 47/72 (65%)
Frame = -3
Query: 298 LDSNNELLHGFIDEEVYKLPHASYTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTL 119
LD NN LHG ++EEVY P +P VCRL RS YGLKQAS QW LS FL +
Sbjct: 16 LDVNNAFLHGDLNEEVYMKPPPGLVMDKPNLVCRLQRSLYGLKQASRQWFTRLSSFLLSQ 75
Query: 118 GYQRSASDYSLF 83
G+++S+ D+SLF
Sbjct: 76 GFRQSSVDHSLF 87
>gb|AAB82754.1| retrofit [Oryza longistaminata]
Length = 1445
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/116 (38%), Positives = 64/116 (55%), Gaps = 1/116 (0%)
Frame = -3
Query: 397 GKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHASYTE 221
G DY+ T SP+VK + ++ LD N LHGF++EEVY + P +
Sbjct: 1011 GIDYEDTFSPVVKAATIRIILSIAVSRGWSLRQLDVQNAFLHGFLEEEVYMQQPPGFESS 1070
Query: 220 AQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGLIAF 53
++P VC+L ++ YGLKQA W LSK L LG++ S +D SLFF G++ F
Sbjct: 1071 SKPDYVCKLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMF 1126
>emb|CAN60374.1| hypothetical protein VITISV_001215 [Vitis vinifera]
Length = 1535
Score = 77.4 bits (189), Expect = 2e-12
Identities = 45/109 (41%), Positives = 57/109 (52%), Gaps = 1/109 (0%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q+EG DY+ T SPI K + LD NN LHG + EE+Y P
Sbjct: 1081 QLEGVDYQDTFSPIAKIITVCCLLALAAARRWSLHQLDVNNAFLHGDLHEEIYMSPPPGL 1140
Query: 226 T-EAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLF 83
+ + VCRL +S YGLKQAS QW + SK + GY +S +DYSLF
Sbjct: 1141 RRQGEENLVCRLHKSLYGLKQASRQWFSKFSKAIQAAGYVQSRADYSLF 1189
>ref|XP_004235124.1| PREDICTED: uncharacterized protein LOC101260409 [Solanum
lycopersicum]
Length = 442
Score = 77.0 bits (188), Expect = 2e-12
Identities = 44/109 (40%), Positives = 56/109 (51%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q G DY T SP+VK + +D NN LLHG ++EEVY
Sbjct: 241 QQAGIDYNETFSPVVKMTTVRTLISLAVKKGWNMYQVDVNNALLHGDLNEEVYMALPQGL 300
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFF 80
VC+L +S YGLKQAS QW +L+ L++ GY S SDYSLF+
Sbjct: 301 AVDNSNMVCKLKKSLYGLKQASQQWYDKLANNLYSKGYNHSNSDYSLFY 349
>emb|CAN61640.1| hypothetical protein VITISV_021909 [Vitis vinifera]
Length = 1361
Score = 77.0 bits (188), Expect = 2e-12
Identities = 47/116 (40%), Positives = 60/116 (51%), Gaps = 1/116 (0%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q+ G D+ T SP+V+ T + LD N LHGF++EEVY Y
Sbjct: 911 QVHGLDFGDTFSPVVRPATVRIILSLAVTSGWRLHQLDVKNAFLHGFLNEEVYMEQPPGY 970
Query: 226 TEAQ-PRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGL 62
T+ Q P+ VCRL R+ YGLKQA W S FL G+ S +D SLFF Y+ L
Sbjct: 971 TDPQFPQHVCRLKRALYGLKQAPRAWFHRFSSFLLKHGFHSSQADSSLFF-YHSSL 1025
>gb|ABH07899.1| putative polyprotein [Solanum lycopersicum]
Length = 1428
Score = 77.0 bits (188), Expect = 2e-12
Identities = 42/108 (38%), Positives = 58/108 (53%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q EG DY T SP+ K + + +D N L G + EEVY +
Sbjct: 995 QQEGLDYHDTFSPVAKMVTVRCVIALAVSKGWTLYQMDVYNAFLQGVLGEEVYMKMPEGF 1054
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLF 83
+ +VC+L++S YGLKQAS QWN++L+K L G+ +SA DYSLF
Sbjct: 1055 AKPGENKVCKLLKSLYGLKQASRQWNLKLTKVLQATGFSQSAHDYSLF 1102
>gb|ABD32333.1| polyprotein-like, putative [Medicago truncatula]
Length = 635
Score = 76.3 bits (186), Expect = 4e-12
Identities = 44/108 (40%), Positives = 58/108 (53%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
QIEG DY T SP+ K + LD NN LHG + E VYK
Sbjct: 171 QIEGLDYFDTFSPVAKITIVRLVIALASINHWFLHQLDVNNAFLHGDLQENVYKKIPPGL 230
Query: 226 TEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLF 83
+ +P QVC+L +S YGLKQAS +W +L+ L + Y+++ASD SLF
Sbjct: 231 STFKPNQVCKLSKSLYGLKQASRKWYEKLTTLLISNDYKQAASDASLF 278
>pir||T14592 reverse transcriptase Tbv4 - beet Ty1-copia-like retrotransposon
(fragment) gi|1171501|emb|CAA93149.1| reverse
transcriptase [Beta vulgaris subsp. vulgaris]
Length = 86
Score = 76.3 bits (186), Expect = 4e-12
Identities = 39/74 (52%), Positives = 48/74 (64%)
Frame = -3
Query: 277 LHGFIDEEVYKLPHASYTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSAS 98
LHG +DEEVY Y + P +VCRL +S YGLKQA QW +LS L G+QRS +
Sbjct: 4 LHGDLDEEVYMTLPPGYKCSSPTKVCRLRKSLYGLKQAPRQWFAKLSTALLDYGFQRSYA 63
Query: 97 DYSLFFCYYKGLIA 56
DYSL FCY KG ++
Sbjct: 64 DYSL-FCYTKGTVS 76
>gb|AAC62132.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1137
Score = 76.3 bits (186), Expect = 4e-12
Identities = 40/110 (36%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVY-KLPHAS 230
Q EG DY+ SP+VK C E+Q +D LHG++DE +Y + P
Sbjct: 709 QKEGIDYQEIFSPVVKHVSIRLLLSMVTHCDMELQQMDVKTAFLHGYLDETIYIEQPEGY 768
Query: 229 YTEAQPRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFF 80
+ P +VC L RS YGL+Q+ QWN ++F+ +GY+RS D ++F
Sbjct: 769 VHKRYPDKVCLLKRSLYGLRQSPRQWNNRFNEFMQKIGYERSKYDSCVYF 818
>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
Length = 1384
Score = 75.9 bits (185), Expect = 5e-12
Identities = 43/116 (37%), Positives = 62/116 (53%), Gaps = 1/116 (0%)
Frame = -3
Query: 406 QIEGKDYKFTSSPIVKFXXXXXXXXXXXTCA*EIQ*LDSNNELLHGFIDEEVYKLPHASY 227
Q EG DY T SP+VK + I+ LD N LHG+++E++Y H +
Sbjct: 945 QQEGLDYTETFSPVVKHSTIRLVLALAVSHRWPIRQLDVQNVFLHGYLNEDIYMKQHVGF 1004
Query: 226 TEAQ-PRQVCRLMRSFYGLKQASWQWNVELSKFLFTLGYQRSASDYSLFFCYYKGL 62
+ + P+ VC+L RS YGLKQA W S +L LG+ S +DYS+F +G+
Sbjct: 1005 VDPKFPQHVCKLRRSLYGLKQAPRAWFRCFSDYLEELGFLESRADYSMFTFNNRGI 1060