BLASTX nr result
ID: Rheum21_contig00024172
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00024172
(328 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus comm... 141 8e-32
ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [V... 140 1e-31
ref|XP_006591473.1| PREDICTED: DNA polymerase alpha subunit B-li... 140 2e-31
ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-li... 140 2e-31
gb|EXB94967.1| DNA polymerase alpha subunit B [Morus notabilis] 139 5e-31
ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabi... 137 1e-30
ref|XP_006300633.1| hypothetical protein CARUB_v10019947mg, part... 135 4e-30
ref|XP_004239184.1| PREDICTED: DNA polymerase alpha subunit B-li... 135 6e-30
ref|XP_006341754.1| PREDICTED: DNA polymerase alpha subunit B-li... 135 7e-30
gb|EOY00828.1| DNA polymerase alpha 2 [Theobroma cacao] 135 7e-30
dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidops... 134 1e-29
gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit ... 134 1e-29
ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana] g... 134 1e-29
ref|XP_006378282.1| DNA polymerase alpha subunit B family protei... 134 2e-29
gb|EMJ25471.1| hypothetical protein PRUPE_ppa018609mg [Prunus pe... 134 2e-29
ref|XP_006438110.1| hypothetical protein CICLE_v10030973mg [Citr... 133 3e-29
gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana] 132 5e-29
ref|XP_006484041.1| PREDICTED: DNA polymerase alpha subunit B-li... 131 8e-29
gb|ESW35722.1| hypothetical protein PHAVU_001G259300g [Phaseolus... 131 8e-29
ref|XP_004310044.1| PREDICTED: DNA polymerase alpha subunit B-li... 131 1e-28
>ref|XP_002514998.1| alpha DNA polymerase, putative [Ricinus communis]
gi|223546049|gb|EEF47552.1| alpha DNA polymerase,
putative [Ricinus communis]
Length = 621
Score = 141 bits (356), Expect = 8e-32
Identities = 63/101 (62%), Positives = 81/101 (80%)
Frame = -3
Query: 305 DQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASRP 126
+ EDDII++VQP K+CS +HGS P+P C+FMYDRIED+FN L+ I KH +A +AS
Sbjct: 177 ENMEDDIIKRVQPRKKCSFVVHGSGPEPGCRFMYDRIEDRFNALDNRIRKHAAALVASGL 236
Query: 125 HEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+E+ DPT+ASQ ++FA+GMI CDGEGRLNEKS LLQSS+E
Sbjct: 237 YEEPTDPTVASQRNVFAVGMICCDGEGRLNEKSVLLQSSIE 277
>ref|XP_002265789.1| PREDICTED: DNA polymerase alpha subunit B [Vitis vinifera]
gi|297738371|emb|CBI27572.3| unnamed protein product
[Vitis vinifera]
Length = 623
Score = 140 bits (354), Expect = 1e-31
Identities = 66/104 (63%), Positives = 81/104 (77%)
Frame = -3
Query: 314 NASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIA 135
N + +DDIIR+VQP KRCSL +HGS P P C+FMYDRIED+FN LE I KH +A +A
Sbjct: 175 NKFENVDDDIIRRVQPSKRCSLLVHGSRPGPGCRFMYDRIEDRFNSLENRIKKHTTALVA 234
Query: 134 SRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+ +++ DPT+ASQ S+FA GMI CDGEGRLNEKS LLQSSV+
Sbjct: 235 TGLYKEPTDPTVASQKSVFATGMICCDGEGRLNEKSILLQSSVQ 278
>ref|XP_006591473.1| PREDICTED: DNA polymerase alpha subunit B-like isoform X2 [Glycine
max]
Length = 577
Score = 140 bits (353), Expect = 2e-31
Identities = 64/108 (59%), Positives = 81/108 (75%)
Frame = -3
Query: 326 TTLNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVS 147
T N +D++EDD++R+V +R SL IHGS PKP C+F+YDR ED+ N +E + KH
Sbjct: 165 TVPNVENDENEDDVVRRVPLFERSSLSIHGSGPKPGCRFLYDRTEDRLNAIENRLRKHTR 224
Query: 146 AFIASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AF+AS HE+ DPT ASQ SIFA+GMI CDGEGRLNEKS +LQSS+E
Sbjct: 225 AFVASGLHEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIE 272
>ref|XP_003537544.1| PREDICTED: DNA polymerase alpha subunit B-like isoform X1 [Glycine
max]
Length = 605
Score = 140 bits (353), Expect = 2e-31
Identities = 64/108 (59%), Positives = 81/108 (75%)
Frame = -3
Query: 326 TTLNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVS 147
T N +D++EDD++R+V +R SL IHGS PKP C+F+YDR ED+ N +E + KH
Sbjct: 165 TVPNVENDENEDDVVRRVPLFERSSLSIHGSGPKPGCRFLYDRTEDRLNAIENRLRKHTR 224
Query: 146 AFIASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AF+AS HE+ DPT ASQ SIFA+GMI CDGEGRLNEKS +LQSS+E
Sbjct: 225 AFVASGLHEEPTDPTTASQRSIFAVGMICCDGEGRLNEKSVMLQSSIE 272
>gb|EXB94967.1| DNA polymerase alpha subunit B [Morus notabilis]
Length = 670
Score = 139 bits (349), Expect = 5e-31
Identities = 64/101 (63%), Positives = 81/101 (80%)
Frame = -3
Query: 305 DQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASRP 126
+ +EDD+IRK+QP +RCSL +HGS P C+FMYDRIED+FN LE+ I K+ AF +S+
Sbjct: 176 ENNEDDVIRKIQPGRRCSLIVHGSKPGTGCRFMYDRIEDRFNALESRIRKYAVAFTSSKL 235
Query: 125 HEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+E+ VDPT++SQ SIF +GMI CDGEG LNEKS LLQSSVE
Sbjct: 236 YEEPVDPTVSSQKSIFTVGMICCDGEGHLNEKSTLLQSSVE 276
>ref|XP_002888612.1| DNA polymerase alpha subunit B family [Arabidopsis lyrata subsp.
lyrata] gi|297334453|gb|EFH64871.1| DNA polymerase alpha
subunit B family [Arabidopsis lyrata subsp. lyrata]
Length = 619
Score = 137 bits (345), Expect = 1e-30
Identities = 64/105 (60%), Positives = 81/105 (77%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
+N + SEDDII++VQ +RCSL+++GS P+P C+FMYDR ED+FN LE I +H AF
Sbjct: 173 SNEIENSEDDIIKRVQTSQRCSLEVNGSGPEPGCRFMYDRTEDRFNVLENRIVRHADAFA 232
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS E
Sbjct: 233 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSVLLQSSAE 277
>ref|XP_006300633.1| hypothetical protein CARUB_v10019947mg, partial [Capsella rubella]
gi|482569343|gb|EOA33531.1| hypothetical protein
CARUB_v10019947mg, partial [Capsella rubella]
Length = 639
Score = 135 bits (341), Expect = 4e-30
Identities = 64/105 (60%), Positives = 80/105 (76%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
NN + +EDDII++VQ +RCSL ++GS P+P C+FMYDR ED+FN LE I +H AF
Sbjct: 193 NNDVENNEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFNALENRIIRHADAFA 252
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS E
Sbjct: 253 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAE 297
>ref|XP_004239184.1| PREDICTED: DNA polymerase alpha subunit B-like [Solanum
lycopersicum]
Length = 617
Score = 135 bits (340), Expect = 6e-30
Identities = 63/106 (59%), Positives = 79/106 (74%)
Frame = -3
Query: 320 LNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAF 141
+ N + DDII++VQPIKRCSL I S P+P C+FMYDR E+KFN+LE+ I H +A
Sbjct: 169 IENDEENPSDDIIKRVQPIKRCSLQIISSKPEPGCRFMYDRTENKFNFLESRIKDHTTAL 228
Query: 140 IASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+AS HE+ DPT+ASQ S+FA+GMI C+ EGRL EK LLQSSVE
Sbjct: 229 VASGLHEEPTDPTVASQRSVFAVGMICCEEEGRLKEKPILLQSSVE 274
>ref|XP_006341754.1| PREDICTED: DNA polymerase alpha subunit B-like [Solanum tuberosum]
Length = 617
Score = 135 bits (339), Expect = 7e-30
Identities = 63/106 (59%), Positives = 79/106 (74%)
Frame = -3
Query: 320 LNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAF 141
+ N + DDII++VQPIKRCSL I S P+P C+FMYDR E+KFN+LE+ I H +A
Sbjct: 169 IENDEENLNDDIIKRVQPIKRCSLQIISSQPEPGCRFMYDRTENKFNFLESRIKDHTTAL 228
Query: 140 IASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+AS HE+ DPT+ASQ S+FA+GMI C+ EGRL EK LLQSSVE
Sbjct: 229 VASGLHEEPTDPTVASQRSVFAVGMICCEEEGRLKEKPILLQSSVE 274
>gb|EOY00828.1| DNA polymerase alpha 2 [Theobroma cacao]
Length = 621
Score = 135 bits (339), Expect = 7e-30
Identities = 64/109 (58%), Positives = 82/109 (75%), Gaps = 2/109 (1%)
Frame = -3
Query: 323 TLNNASDQS--EDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHV 150
T+N D ED +I+++QP KRCSL +H S P+P C+FMYDRIED FN LE I KH
Sbjct: 168 TVNGMHDHENLEDAVIKRIQPQKRCSLVVHSSGPEPGCRFMYDRIEDGFNALENRIRKHA 227
Query: 149 SAFIASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+A +AS +++ +DP++ASQ SIFA+GMIFCD EG LN+KS LLQSSVE
Sbjct: 228 AALVASGLYQEPMDPSVASQRSIFAVGMIFCDDEGHLNDKSILLQSSVE 276
>dbj|BAC43176.1| putative DNA polymerase alpha subunit [Arabidopsis thaliana]
gi|29028994|gb|AAO64876.1| At1g67630 [Arabidopsis
thaliana]
Length = 620
Score = 134 bits (337), Expect = 1e-29
Identities = 64/105 (60%), Positives = 80/105 (76%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
NN + SEDDII++VQ +RCSL ++GS P+P C+FMYDR ED+F+ LE I +H AF
Sbjct: 174 NNDVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFA 233
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS E
Sbjct: 234 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAE 278
>gb|AAG52305.1|AC011020_12 putative DNA polymerase alpha subunit [Arabidopsis thaliana]
Length = 620
Score = 134 bits (337), Expect = 1e-29
Identities = 64/105 (60%), Positives = 80/105 (76%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
NN + SEDDII++VQ +RCSL ++GS P+P C+FMYDR ED+F+ LE I +H AF
Sbjct: 174 NNDVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFA 233
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS E
Sbjct: 234 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAE 278
>ref|NP_176930.2| DNA polymerase alpha 2 [Arabidopsis thaliana]
gi|332196552|gb|AEE34673.1| DNA polymerase alpha 2
[Arabidopsis thaliana]
Length = 620
Score = 134 bits (337), Expect = 1e-29
Identities = 64/105 (60%), Positives = 80/105 (76%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
NN + SEDDII++VQ +RCSL ++GS P+P C+FMYDR ED+F+ LE I +H AF
Sbjct: 174 NNDVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFA 233
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS E
Sbjct: 234 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSSAE 278
>ref|XP_006378282.1| DNA polymerase alpha subunit B family protein [Populus trichocarpa]
gi|550329229|gb|ERP56079.1| DNA polymerase alpha subunit
B family protein [Populus trichocarpa]
Length = 618
Score = 134 bits (336), Expect = 2e-29
Identities = 62/98 (63%), Positives = 77/98 (78%)
Frame = -3
Query: 296 EDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASRPHEK 117
ED+II++ QP KRCSL +H P+P C+FMYD+IED+FN LE I KH A AS +E+
Sbjct: 179 EDEIIKRAQPCKRCSLMVHRLGPEPGCRFMYDKIEDRFNALENRIRKHAIALFASGLYEE 238
Query: 116 AVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+DPT+ASQ +IFA+GMI CDGEGRLNEKS +LQSSVE
Sbjct: 239 PMDPTVASQRNIFAVGMICCDGEGRLNEKSIMLQSSVE 276
>gb|EMJ25471.1| hypothetical protein PRUPE_ppa018609mg [Prunus persica]
Length = 612
Score = 134 bits (336), Expect = 2e-29
Identities = 60/101 (59%), Positives = 80/101 (79%)
Frame = -3
Query: 305 DQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASRP 126
+ +DD+IRKV+P KRCSL +HGS P+ C+FMYDRIED+FN LE I+K+ +A ++S
Sbjct: 177 NHEDDDVIRKVKPGKRCSLIVHGSGPEIGCRFMYDRIEDRFNALENRISKYATALVSSGQ 236
Query: 125 HEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+E+ +DPT++SQ IF +GMI+CDGEG LNEKS LLQSS E
Sbjct: 237 YEEPLDPTVSSQKIIFTVGMIYCDGEGHLNEKSTLLQSSAE 277
>ref|XP_006438110.1| hypothetical protein CICLE_v10030973mg [Citrus clementina]
gi|557540306|gb|ESR51350.1| hypothetical protein
CICLE_v10030973mg [Citrus clementina]
Length = 620
Score = 133 bits (334), Expect = 3e-29
Identities = 59/106 (55%), Positives = 82/106 (77%)
Frame = -3
Query: 320 LNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAF 141
+ + + +EDDII++V+ K+CSL +HGS P+P C+FMYDR ED+FN LE I KH +A
Sbjct: 170 IEHDDENTEDDIIKRVKTGKKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANAL 229
Query: 140 IASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
++S +E+ DPT+ASQ ++FA+GMI CDG+G LN+KS LLQSSVE
Sbjct: 230 VSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVE 275
>gb|AAG28895.1|AC008113_11 F12A21.24 [Arabidopsis thaliana]
Length = 803
Score = 132 bits (332), Expect = 5e-29
Identities = 63/103 (61%), Positives = 79/103 (76%)
Frame = -3
Query: 317 NNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFI 138
NN + SEDDII++VQ +RCSL ++GS P+P C+FMYDR ED+F+ LE I +H AF
Sbjct: 174 NNDVENSEDDIIKRVQTSQRCSLKVNGSGPEPGCRFMYDRTEDRFSALEYRIVRHADAFA 233
Query: 137 ASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSS 9
AS +E+ VDP +ASQ SIFA+GMI CDGEG LN+KS LLQSS
Sbjct: 234 ASGLYEEQVDPAVASQRSIFAVGMICCDGEGHLNDKSILLQSS 276
>ref|XP_006484041.1| PREDICTED: DNA polymerase alpha subunit B-like [Citrus sinensis]
Length = 620
Score = 131 bits (330), Expect = 8e-29
Identities = 58/106 (54%), Positives = 82/106 (77%)
Frame = -3
Query: 320 LNNASDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAF 141
+ + + +EDDII++V+ ++CSL +HGS P+P C+FMYDR ED+FN LE I KH +A
Sbjct: 170 IEHDDENTEDDIIKRVKTGEKCSLMVHGSGPEPGCRFMYDRTEDRFNALENRIRKHANAL 229
Query: 140 IASRPHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
++S +E+ DPT+ASQ ++FA+GMI CDG+G LN+KS LLQSSVE
Sbjct: 230 VSSGLYEEPTDPTVASQRTLFAVGMICCDGDGHLNDKSVLLQSSVE 275
>gb|ESW35722.1| hypothetical protein PHAVU_001G259300g [Phaseolus vulgaris]
Length = 625
Score = 131 bits (330), Expect = 8e-29
Identities = 61/102 (59%), Positives = 76/102 (74%)
Frame = -3
Query: 308 SDQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASR 129
++ EDD++R+V +RCSL IHGS KP C+FMYDR ED+ N +E I KH AF+AS
Sbjct: 180 TENDEDDVVRRVPQRERCSLVIHGSGLKPGCRFMYDRTEDRLNAIENRIRKHTRAFVASG 239
Query: 128 PHEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+E+ DPT ASQ SIFA+GMI CD EGRLNEKS +LQSS+E
Sbjct: 240 LYEEPTDPTSASQRSIFAVGMICCDAEGRLNEKSVMLQSSIE 281
>ref|XP_004310044.1| PREDICTED: DNA polymerase alpha subunit B-like [Fragaria vesca
subsp. vesca]
Length = 620
Score = 131 bits (329), Expect = 1e-28
Identities = 61/101 (60%), Positives = 78/101 (77%)
Frame = -3
Query: 305 DQSEDDIIRKVQPIKRCSLDIHGSNPKPACKFMYDRIEDKFNYLETHINKHVSAFIASRP 126
+Q +DDIIR+V+P KRCSL +HGS P+ C+FMYDRI D+FN LE I KH + ++S
Sbjct: 178 NQDDDDIIRRVKPGKRCSLVVHGSGPEIDCRFMYDRIADRFNALENRILKHATELVSSGQ 237
Query: 125 HEKAVDPTLASQNSIFAIGMIFCDGEGRLNEKSALLQSSVE 3
+E+ VDPT++S+ SIF +GMI CDGEG LNEKS LLQSS E
Sbjct: 238 YEEPVDPTVSSEKSIFTVGMICCDGEGHLNEKSTLLQSSAE 278