BLASTX nr result
ID: Rheum21_contig00023476
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00023476
(307 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding pro... 101 9e-20
emb|CAA57407.1| light harvesting chlorophyll a /b-binding protei... 101 1e-19
gb|ACN40044.1| unknown [Picea sitchensis] 101 1e-19
gb|ACN40027.1| unknown [Picea sitchensis] 101 1e-19
gb|ABK26071.1| unknown [Picea sitchensis] gi|148908641|gb|ABR174... 101 1e-19
gb|ABK26463.1| unknown [Picea sitchensis] 101 1e-19
gb|ABK23849.1| unknown [Picea sitchensis] 101 1e-19
gb|ABK23263.1| unknown [Picea sitchensis] gi|116792001|gb|ABK261... 101 1e-19
gb|ABK23091.1| unknown [Picea sitchensis] 101 1e-19
gb|ABK22510.1| unknown [Picea sitchensis] gi|116782855|gb|ABK226... 101 1e-19
gb|ABK22330.1| unknown [Picea sitchensis] 101 1e-19
gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyac... 101 1e-19
sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding pro... 100 2e-19
gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum... 100 2e-19
gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [H... 100 3e-19
gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein ... 100 3e-19
gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum... 100 3e-19
emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta] 99 6e-19
emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta] 99 6e-19
gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b bind... 99 6e-19
>sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor gi|20661|emb|CAA32657.1| unnamed
protein product [Pinus sylvestris]
Length = 278
Score = 101 bits (252), Expect = 9e-20
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGAHGEARLTMRKATGKKSVAASIDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEQPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK26071.1| unknown [Picea sitchensis] gi|148908641|gb|ABR17429.1| unknown
[Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK26463.1| unknown [Picea sitchensis]
Length = 251
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK23263.1| unknown [Picea sitchensis] gi|116792001|gb|ABK26194.1| unknown
[Picea sitchensis] gi|224285000|gb|ACN40229.1| unknown
[Picea sitchensis] gi|224285305|gb|ACN40377.1| unknown
[Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK23091.1| unknown [Picea sitchensis]
Length = 110
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK22510.1| unknown [Picea sitchensis] gi|116782855|gb|ABK22691.1| unknown
[Picea sitchensis] gi|116791804|gb|ABK26115.1| unknown
[Picea sitchensis] gi|148908337|gb|ABR17282.1| unknown
[Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMRKATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 101 bits (251), Expect = 1e-19
Identities = 44/68 (64%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R GKK ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGGHGEARLTMREATGKKSVAASSDSPWYGPDRVLYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|AAT08651.1| chloroplast chlorophyll A-B binding protein [Hyacinthus orientalis]
Length = 239
Score = 101 bits (251), Expect = 1e-19
Identities = 51/81 (62%), Positives = 58/81 (71%), Gaps = 8/81 (9%)
Frame = +1
Query: 88 TSRVSSGRLSGIAA--------LKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPF 243
T +SS L+G A + G+ +FT R T GK TVS+ SPWYGP+RVKYLGPF
Sbjct: 16 TMALSSPSLAGTAVKLTPSSSVVSGDGRFTMRKTAGKPKTVSS-GSPWYGPERVKYLGPF 74
Query: 244 SGEAPSYLTGEFPGDYGWDTA 306
SGEAPSYLTGEFPGDYGWDTA
Sbjct: 75 SGEAPSYLTGEFPGDYGWDTA 95
>sp|P24006.1|CB2A_PYRPY RecName: Full=Chlorophyll a-b binding protein 1A, chloroplastic;
AltName: Full=LHCII type II CAB-1A; Short=LHCP; Flags:
Precursor gi|218019|dbj|BAA00449.1| light harvesting a/b
binding protein [Pyrus pyrifolia var. culta]
Length = 278
Score = 100 bits (250), Expect = 2e-19
Identities = 43/68 (63%), Positives = 51/68 (75%)
Frame = +1
Query: 103 SGRLSGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFP 282
+ +L G+ GE++ T R G+K ++ DSPWYGPDRV YLGPFSGE PSYLTGEFP
Sbjct: 28 NNQLLGVGGAHGEARLTMRKATGRKSVAASIDSPWYGPDRVMYLGPFSGEPPSYLTGEFP 87
Query: 283 GDYGWDTA 306
GDYGWDTA
Sbjct: 88 GDYGWDTA 95
>gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 100 bits (249), Expect = 2e-19
Identities = 46/57 (80%), Positives = 48/57 (84%)
Frame = +1
Query: 136 GESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 306
GE + T R T GK VS+ DSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA
Sbjct: 29 GEGRITMRKTAGKTKNVSS-DSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 84
>gb|AAT08694.1| chloroplast chlorophyll A-B binding protein 40 [Hyacinthus
orientalis]
Length = 211
Score = 100 bits (248), Expect = 3e-19
Identities = 46/64 (71%), Positives = 51/64 (79%)
Frame = +1
Query: 115 SGIAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 294
S + + G+ +FT R T K TVS+ SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG
Sbjct: 22 SSSSGVSGDGRFTMRKTAAKPKTVSS-GSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYG 80
Query: 295 WDTA 306
WDTA
Sbjct: 81 WDTA 84
>gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 99.8 bits (247), Expect = 3e-19
Identities = 45/62 (72%), Positives = 49/62 (79%)
Frame = +1
Query: 121 IAALKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 300
+ + GE + T R T KKV S+ SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD
Sbjct: 27 VGGVHGEGRITMRKTASKKVVASS-GSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 85
Query: 301 TA 306
TA
Sbjct: 86 TA 87
>gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 99.8 bits (247), Expect = 3e-19
Identities = 45/57 (78%), Positives = 49/57 (85%)
Frame = +1
Query: 136 GESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTA 306
GE + T R T GK +VS+ DSPWYGPDRVKYLGPFSGE+PSYLTGEFPGDYGWDTA
Sbjct: 29 GEGRITMRKTAGKTKSVSS-DSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTA 84
>emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 99.0 bits (245), Expect = 6e-19
Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +1
Query: 103 SGRLSGIAA-LKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEF 279
+ +L G+ A + GE++ T R KKV+VS SPWYGPDRV YLGPFSGE PSYLTGEF
Sbjct: 23 TNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEF 82
Query: 280 PGDYGWDTA 306
PGDYGWDTA
Sbjct: 83 PGDYGWDTA 91
>emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 99.0 bits (245), Expect = 6e-19
Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +1
Query: 103 SGRLSGIAA-LKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEF 279
+ +L G+ A + GE++ T R KKV+VS SPWYGPDRV YLGPFSGE PSYLTGEF
Sbjct: 23 TNQLLGVGAGVHGEARVTMRKATTKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEF 82
Query: 280 PGDYGWDTA 306
PGDYGWDTA
Sbjct: 83 PGDYGWDTA 91
>gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 99.0 bits (245), Expect = 6e-19
Identities = 46/69 (66%), Positives = 53/69 (76%), Gaps = 1/69 (1%)
Frame = +1
Query: 103 SGRLSGIAA-LKGESKFTTRATRGKKVTVSTPDSPWYGPDRVKYLGPFSGEAPSYLTGEF 279
+ +L G+ A + GE++ T R KKV+VS SPWYGPDRV YLGPFSGE PSYLTGEF
Sbjct: 20 TNQLLGVGAGVHGEARVTMRKAATKKVSVSASTSPWYGPDRVLYLGPFSGEPPSYLTGEF 79
Query: 280 PGDYGWDTA 306
PGDYGWDTA
Sbjct: 80 PGDYGWDTA 88