BLASTX nr result
ID: Rheum21_contig00022129
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00022129
(592 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX14648.1| gag-pol polyprotein [Cenchrus compressus] 112 1e-22
gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japoni... 111 2e-22
gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japoni... 111 2e-22
gb|ABC49720.1| gag-pol polyprotein [Fargesia robusta] 110 2e-22
gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sa... 110 2e-22
ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759... 110 3e-22
gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subc... 110 4e-22
gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Jap... 110 4e-22
emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group] 110 4e-22
gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Ja... 110 4e-22
ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752... 109 5e-22
ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772... 108 8e-22
gb|AAM94350.1| gag-pol polyprotein [Zea mays] 107 2e-21
dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group] 107 3e-21
gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum... 105 9e-21
ref|XP_004967032.1| PREDICTED: uncharacterized protein LOC101782... 105 1e-20
gb|ADB27477.1| gag-pol polyprotein [Nassella trichotoma] 105 1e-20
gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare] 105 1e-20
gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare] 105 1e-20
gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Ja... 103 3e-20
>gb|AAX14648.1| gag-pol polyprotein [Cenchrus compressus]
Length = 207
Score = 112 bits (279), Expect = 1e-22
Identities = 63/146 (43%), Positives = 86/146 (58%), Gaps = 6/146 (4%)
Frame = +2
Query: 92 RTSRDSFTQPIGSSE----LKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSE 259
+T + T+ +G+ + LKG C LA + +V +I S + L+ + + +
Sbjct: 50 KTKNNKNTKSVGNKKDEIRLKGHC----LLATKSDVNELIASTSIAYALVCKDALISIQD 105
Query: 260 S--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETK 433
+LP I ++LQE+ RGIEHQID +PGASLPN A YRT+PEETK
Sbjct: 106 MQHSLPPAIANILQEYSDVFPSEIPAGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETK 165
Query: 434 ELHKQVQELLEKGSVRESLSPCTVPV 511
E+ +QVQELL+KG VRESLSPC VPV
Sbjct: 166 EIQRQVQELLDKGYVRESLSPCAVPV 191
>gb|AAQ56407.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
Length = 1619
Score = 111 bits (277), Expect = 2e-22
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Frame = +2
Query: 62 IQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPT 241
I E+ + ++ +S +LKG+C F+A + ++ V + L+ T
Sbjct: 535 IAANELEKHKKKPTNSVQNNKNEIKLKGSC----FIATKSDLDEVDTDTVVCYALVCKET 590
Query: 242 ALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRT 415
P+ ++ +LP + ++LQE+ RGIEHQID +PGASLPN A YRT
Sbjct: 591 LFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 650
Query: 416 SPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
+PEETKE+ +QVQELL+KG VRESLSPC+VPV
Sbjct: 651 NPEETKEIQRQVQELLDKGYVRESLSPCSVPV 682
>gb|AAQ56388.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|91795218|gb|ABE60890.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1616
Score = 111 bits (277), Expect = 2e-22
Identities = 62/152 (40%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Frame = +2
Query: 62 IQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPT 241
I E+ + ++ +S +LKG+C F+A + ++ V + L+ T
Sbjct: 639 IAANELEKHKKKPTNSVQNNKNEIKLKGSC----FIATKSDLDEVDTDTVVCYALVCKET 694
Query: 242 ALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRT 415
P+ ++ +LP + ++LQE+ RGIEHQID +PGASLPN A YRT
Sbjct: 695 LFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754
Query: 416 SPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
+PEETKE+ +QVQELL+KG VRESLSPC+VPV
Sbjct: 755 NPEETKEIQRQVQELLDKGYVRESLSPCSVPV 786
>gb|ABC49720.1| gag-pol polyprotein [Fargesia robusta]
Length = 222
Score = 110 bits (276), Expect = 2e-22
Identities = 63/148 (42%), Positives = 85/148 (57%), Gaps = 2/148 (1%)
Frame = +2
Query: 74 EVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPV 253
E+ Q ++ + S + +LKG C FLA + +V + S + L+
Sbjct: 65 ELEQHKKKNSKSVHEMKNEIKLKGAC----FLATKSDVNELDASTSVCYALLCKQALFSF 120
Query: 254 SE--SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEE 427
E S++P + ++LQE+ RGIEHQID +PGASLPN A YRT+PEE
Sbjct: 121 EEVPSSVPPAVTNLLQEYMDVFPKDVPPGLPPVRGIEHQIDLIPGASLPNRAPYRTNPEE 180
Query: 428 TKELHKQVQELLEKGSVRESLSPCTVPV 511
TKE+ +QVQELL+KG VRESLSPC VPV
Sbjct: 181 TKEIQRQVQELLDKGYVRESLSPCAVPV 208
>gb|AAK91332.1|AC090441_14 Putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|15217296|gb|AAK92640.1|AC079634_1 Putative
retroelement [Oryza sativa Japonica Group]
gi|31431373|gb|AAP53161.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1708
Score = 110 bits (276), Expect = 2e-22
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Frame = +2
Query: 62 IQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPT 241
I E+ + ++ +S +LKG+C F+A + ++ V + L+ T
Sbjct: 639 IAANELEKHKKKPTNSVQNNKNEIKLKGSC----FIATKSDLDEVDTDTVVCYALVCKET 694
Query: 242 ALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRT 415
P+ ++ +LP + ++LQE+ RGIEHQID +PGASLPN A YRT
Sbjct: 695 LFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754
Query: 416 SPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
+PEETKE+ +QVQELL+KG VRESLSPC++PV
Sbjct: 755 NPEETKEIQRQVQELLDKGYVRESLSPCSIPV 786
>ref|XP_004980298.1| PREDICTED: uncharacterized protein LOC101759439 [Setaria italica]
Length = 696
Score = 110 bits (275), Expect = 3e-22
Identities = 60/128 (46%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Frame = +2
Query: 134 ELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSE--SALPSCILSVLQEFQX 307
+LKG+C F+A + ++ + + + LI T + E S+LP + ++LQE+
Sbjct: 270 KLKGSC----FIATKSDLDEIDANTAICYALICKQTLFSLQEIPSSLPPVVTNLLQEYAD 325
Query: 308 XXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRES 487
RGIEHQID +PGASLPN A YRT+PEETKE+ +QVQELL+KG VRES
Sbjct: 326 IFPNEVPPGLPPTRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRES 385
Query: 488 LSPCTVPV 511
LSPC VPV
Sbjct: 386 LSPCAVPV 393
>gb|ABB47285.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1392
Score = 110 bits (274), Expect = 4e-22
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Frame = +2
Query: 134 ELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPSCILSVLQEFQX 307
+LKG+C F+A + ++ V + L+ T P+ ++ +LP + ++LQE+
Sbjct: 512 KLKGSC----FIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYAD 567
Query: 308 XXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRES 487
RGIEHQID +PGASLPN A YRT+PEETKE+ +QVQELL+KG VRES
Sbjct: 568 IFPKEVPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRES 627
Query: 488 LSPCTVPV 511
LSPC VPV
Sbjct: 628 LSPCAVPV 635
>gb|AAM08551.1|AC092749_4 Putative retroelement [Oryza sativa Japonica Group]
Length = 1357
Score = 110 bits (274), Expect = 4e-22
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Frame = +2
Query: 134 ELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPSCILSVLQEFQX 307
+LKG+C F+A + ++ V + L+ T P+ ++ +LP + ++LQE+
Sbjct: 477 KLKGSC----FIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYAD 532
Query: 308 XXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRES 487
RGIEHQID +PGASLPN A YRT+PEETKE+ +QVQELL+KG VRES
Sbjct: 533 IFPKEVPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRES 592
Query: 488 LSPCTVPV 511
LSPC VPV
Sbjct: 593 LSPCAVPV 600
>emb|CAD39981.1| OSJNBa0032B23.3 [Oryza sativa Japonica Group]
Length = 1170
Score = 110 bits (274), Expect = 4e-22
Identities = 61/152 (40%), Positives = 89/152 (58%), Gaps = 2/152 (1%)
Frame = +2
Query: 62 IQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPT 241
I E+ + ++ +S +LKG+C F+A + ++ V + L+ T
Sbjct: 272 IAANELEKHKKKPTNSVQNNKNEIKLKGSC----FIATKSDLDEVDTDTVVCYALVCKET 327
Query: 242 ALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRT 415
P+ ++ +LP + ++LQE+ RGIEHQID +PGASLPN A YRT
Sbjct: 328 LFPIEDTPISLPPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 387
Query: 416 SPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
+PEETKE+ +Q+QELL+KG VRESLSPC+VPV
Sbjct: 388 NPEETKEIQRQMQELLDKGYVRESLSPCSVPV 419
>gb|AAM74438.1|AC123594_21 Putative retroelement [Oryza sativa Japonica Group]
Length = 1450
Score = 110 bits (274), Expect = 4e-22
Identities = 59/128 (46%), Positives = 80/128 (62%), Gaps = 2/128 (1%)
Frame = +2
Query: 134 ELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPSCILSVLQEFQX 307
+LKG+C F+A + ++ V + L+ T P+ ++ +LP + ++LQE+
Sbjct: 570 KLKGSC----FIATKSDLDEVDTDTVVCYALVCKETLFPIEDTPISLPPPVTNLLQEYAD 625
Query: 308 XXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRES 487
RGIEHQID +PGASLPN A YRT+PEETKE+ +QVQELL+KG VRES
Sbjct: 626 IFPKEVPLGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRES 685
Query: 488 LSPCTVPV 511
LSPC VPV
Sbjct: 686 LSPCAVPV 693
>ref|XP_004954917.1| PREDICTED: uncharacterized protein LOC101752491 [Setaria italica]
Length = 1295
Score = 109 bits (273), Expect = 5e-22
Identities = 56/104 (53%), Positives = 72/104 (69%), Gaps = 2/104 (1%)
Frame = +2
Query: 206 KSPYFPLIALPTALPVSE--SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVP 379
++P+F L+ L ++ S+LPS +L +LQ+F+ RGIEHQID VP
Sbjct: 724 RTPFFVLLHKEVLLSTTDLSSSLPSVVLDLLQDFKDVFPDEVPAGLPPLRGIEHQIDLVP 783
Query: 380 GASLPNHAAYRTSPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
GASLPN AYRT+PEETKE+ +QV+ELL+KG VRESLSPC VPV
Sbjct: 784 GASLPNRPAYRTNPEETKEIQQQVKELLDKGYVRESLSPCAVPV 827
>ref|XP_004980495.1| PREDICTED: uncharacterized protein LOC101772114 [Setaria italica]
Length = 1246
Score = 108 bits (271), Expect = 8e-22
Identities = 56/103 (54%), Positives = 71/103 (68%), Gaps = 2/103 (1%)
Frame = +2
Query: 209 SPYFPLIALPTALPVSE--SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPG 382
+P+F L+ L ++ S+LPS +L +LQ+F+ RGIEHQID VPG
Sbjct: 602 APFFVLLHKEVLLSTTDLPSSLPSVVLDLLQDFKDVFPDEVPAGLPPLRGIEHQIDLVPG 661
Query: 383 ASLPNHAAYRTSPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
ASLPN AYRT+PEETKE+ +QV+ELL+KG VRESLSPC VPV
Sbjct: 662 ASLPNRPAYRTNPEETKEIQQQVKELLDKGYVRESLSPCAVPV 704
>gb|AAM94350.1| gag-pol polyprotein [Zea mays]
Length = 1618
Score = 107 bits (267), Expect = 2e-21
Identities = 58/128 (45%), Positives = 77/128 (60%), Gaps = 2/128 (1%)
Frame = +2
Query: 134 ELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPSCILSVLQEFQX 307
+LKG C LA + +V + + + L+ + + + +LP I ++LQE+
Sbjct: 638 KLKGHC----LLATKTDVNELFASTTVAYALVCKDALISIQDMQHSLPPVITNILQEYSD 693
Query: 308 XXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRES 487
RGIEHQID +PGASLPN A YRT+PEETKE+ +QVQELL+KG VRES
Sbjct: 694 VFPSEIPEGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVQELLDKGYVRES 753
Query: 488 LSPCTVPV 511
LSPC VPV
Sbjct: 754 LSPCAVPV 761
>dbj|BAA89466.1| gag-pol polyprotein [Oryza sativa Indica Group]
Length = 1587
Score = 107 bits (266), Expect = 3e-21
Identities = 61/152 (40%), Positives = 88/152 (57%), Gaps = 2/152 (1%)
Frame = +2
Query: 62 IQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPT 241
I E+ + ++ +S +LKG+C F+A + ++ V + L+ T
Sbjct: 639 IAANELEKHKKKPTNSVQNNKNEIKLKGSC----FIATKSDLDEVDTDTVFCYALVCKET 694
Query: 242 ALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRT 415
P+ ++ +L + ++LQE+ RGIEHQID +PGASLPN A YRT
Sbjct: 695 LFPIEDTPISLRPPVTNLLQEYADIFPKEVPPGLPPIRGIEHQIDLIPGASLPNRAPYRT 754
Query: 416 SPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
+PEETKE+ +QVQELL+KG VRESLSPC+VPV
Sbjct: 755 NPEETKEIQRQVQELLDKGYVRESLSPCSVPV 786
>gb|ABI96971.1| putative gag-pol polyprotein [Triticum monococcum subsp.
aegilopoides]
Length = 1704
Score = 105 bits (262), Expect = 9e-21
Identities = 60/153 (39%), Positives = 85/153 (55%), Gaps = 2/153 (1%)
Frame = +2
Query: 59 QIQPGEVVQGRRTSRDSFTQPIGSSELKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALP 238
QI E Q +++ + + +LK C LA + ++ ++ KS + +
Sbjct: 654 QIVAKEFEQQMQSNNNKQSSVACEIKLKSAC----LLATKSDIDDLDFSKSVCYAFVCKE 709
Query: 239 TALPVSE--SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYR 412
+ S+LP + ++LQEF RGIEHQID +PGASLPN A YR
Sbjct: 710 ALFSFEDVPSSLPPAVTNILQEFTDVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYR 769
Query: 413 TSPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
T+PEETKE+ +QVQELL+KG +RESLSPC VP+
Sbjct: 770 TNPEETKEIMRQVQELLDKGYIRESLSPCAVPI 802
>ref|XP_004967032.1| PREDICTED: uncharacterized protein LOC101782149 [Setaria italica]
Length = 1054
Score = 105 bits (261), Expect = 1e-20
Identities = 55/105 (52%), Positives = 71/105 (67%), Gaps = 2/105 (1%)
Frame = +2
Query: 209 SPYFPLIALPTALPVSE--SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPG 382
+P+F L+ L + S+LPS +L +LQ+F+ RGIEHQID VPG
Sbjct: 720 TPFFVLLHKEVLLSTTNLPSSLPSVVLDLLQDFKDVFPDEVPAGLPPLRGIEHQIDLVPG 779
Query: 383 ASLPNHAAYRTSPEETKELHKQVQELLEKGSVRESLSPCTVPVNV 517
ASLPN AYRT+PEETKE+ +QV+ELL+KG VRESLSPC V V++
Sbjct: 780 ASLPNRPAYRTNPEETKEIQQQVKELLDKGYVRESLSPCAVLVSL 824
>gb|ADB27477.1| gag-pol polyprotein [Nassella trichotoma]
Length = 223
Score = 105 bits (261), Expect = 1e-20
Identities = 61/139 (43%), Positives = 81/139 (58%), Gaps = 4/139 (2%)
Frame = +2
Query: 107 SFTQPIGSSE--LKGTCAQQLFLARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPS 274
S +PI ++E LKGTC LA + ++ S + L+ + + +LP
Sbjct: 73 STAEPIRANEIKLKGTC----LLATKTDMTEFDASDSVCYALVCKEALFSLEDMPPSLPP 128
Query: 275 CILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQ 454
++++LQEF RGIEHQID +P ASLPN A YRT+PE TKE+ +QVQ
Sbjct: 129 PVINILQEFADVFPPDVPPGLPPVRGIEHQIDLIPSASLPNRAPYRTNPEGTKEIQRQVQ 188
Query: 455 ELLEKGSVRESLSPCTVPV 511
ELL+KG VRESLSPC VPV
Sbjct: 189 ELLDKGYVRESLSPCAVPV 207
>gb|AAK94516.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1720
Score = 105 bits (261), Expect = 1e-20
Identities = 49/84 (58%), Positives = 61/84 (72%)
Frame = +2
Query: 260 SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKEL 439
S+LP ++++LQEF RGIEHQID +PGASLPN A YRT+PEETKE+
Sbjct: 734 SSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEI 793
Query: 440 HKQVQELLEKGSVRESLSPCTVPV 511
+QVQELL+KG +RESLSPC VP+
Sbjct: 794 MRQVQELLDKGYIRESLSPCAVPI 817
>gb|AAK94517.1| gag-pol polyprotein [Hordeum vulgare]
Length = 1717
Score = 105 bits (261), Expect = 1e-20
Identities = 49/84 (58%), Positives = 61/84 (72%)
Frame = +2
Query: 260 SALPSCILSVLQEFQXXXXXXXXXXXXXXRGIEHQIDFVPGASLPNHAAYRTSPEETKEL 439
S+LP ++++LQEF RGIEHQID +PGASLPN A YRT+PEETKE+
Sbjct: 731 SSLPPAVINILQEFADVFPQDVPPGLPPIRGIEHQIDLIPGASLPNRAPYRTNPEETKEI 790
Query: 440 HKQVQELLEKGSVRESLSPCTVPV 511
+QVQELL+KG +RESLSPC VP+
Sbjct: 791 MRQVQELLDKGYIRESLSPCAVPI 814
>gb|AAK51582.1|AC022352_18 Putative retroelement [Oryza sativa Japonica Group]
gi|31431012|gb|AAP52850.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 2447
Score = 103 bits (257), Expect = 3e-20
Identities = 53/117 (45%), Positives = 72/117 (61%), Gaps = 2/117 (1%)
Frame = +2
Query: 167 LARRRNVFNVIQGKSPYFPLIALPTALPVSES--ALPSCILSVLQEFQXXXXXXXXXXXX 340
LA + ++ +I S + L+ + + + +LP + ++LQE+
Sbjct: 642 LATKSDINELIASPSVAYALVCKDALISLHDMQHSLPPAVANILQEYSDVFPKEVPPGLP 701
Query: 341 XXRGIEHQIDFVPGASLPNHAAYRTSPEETKELHKQVQELLEKGSVRESLSPCTVPV 511
RGIEHQID +PGASLPN A YRT+PEETKE+ +QV ELL+KG VRESLSPC VPV
Sbjct: 702 PVRGIEHQIDLIPGASLPNRAPYRTNPEETKEIQRQVHELLDKGYVRESLSPCAVPV 758