BLASTX nr result
ID: Rheum21_contig00020775
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00020775
(810 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006467824.1| PREDICTED: splicing factor U2af large subuni... 48 2e-08
ref|XP_006449310.1| hypothetical protein CICLE_v10014912mg [Citr... 48 3e-08
ref|XP_006449309.1| hypothetical protein CICLE_v10014912mg [Citr... 48 3e-08
ref|XP_006377333.1| hypothetical protein POPTR_0011s04990g [Popu... 49 4e-08
ref|XP_002329812.1| predicted protein [Populus trichocarpa] 49 5e-08
gb|EXB82788.1| Splicing factor U2af large subunit B [Morus notab... 43 8e-07
sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large... 42 2e-06
emb|CBI25913.3| unnamed protein product [Vitis vinifera] 42 6e-06
ref|XP_002267854.2| PREDICTED: splicing factor U2af large subuni... 42 6e-06
ref|XP_003635431.1| PREDICTED: splicing factor U2af large subuni... 42 6e-06
emb|CBI35711.3| unnamed protein product [Vitis vinifera] 42 7e-06
>ref|XP_006467824.1| PREDICTED: splicing factor U2af large subunit A-like isoform X1
[Citrus sinensis]
Length = 522
Score = 48.1 bits (113), Expect(2) = 2e-08
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D + C+ A+N L GRKFGG+T+N YYP+ K++ Y++
Sbjct: 482 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 522
Score = 37.7 bits (86), Expect(2) = 2e-08
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRPD N + PGVGKV L+
Sbjct: 457 LVNVVIPRPDQNGGETPGVGKVFLE 481
>ref|XP_006449310.1| hypothetical protein CICLE_v10014912mg [Citrus clementina]
gi|557551921|gb|ESR62550.1| hypothetical protein
CICLE_v10014912mg [Citrus clementina]
Length = 522
Score = 48.1 bits (113), Expect(2) = 3e-08
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D + C+ A+N L GRKFGG+T+N YYP+ K++ Y++
Sbjct: 482 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 522
Score = 37.0 bits (84), Expect(2) = 3e-08
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRPD N + PGVGKV L+
Sbjct: 457 LVNVVIPRPDPNGGETPGVGKVFLE 481
>ref|XP_006449309.1| hypothetical protein CICLE_v10014912mg [Citrus clementina]
gi|557551920|gb|ESR62549.1| hypothetical protein
CICLE_v10014912mg [Citrus clementina]
Length = 521
Score = 48.1 bits (113), Expect(2) = 3e-08
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D + C+ A+N L GRKFGG+T+N YYP+ K++ Y++
Sbjct: 481 YYDAVGCATAKNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 521
Score = 37.0 bits (84), Expect(2) = 3e-08
Identities = 16/25 (64%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRPD N + PGVGKV L+
Sbjct: 456 LVNVVIPRPDPNGGETPGVGKVFLE 480
>ref|XP_006377333.1| hypothetical protein POPTR_0011s04990g [Populus trichocarpa]
gi|550327621|gb|ERP55130.1| hypothetical protein
POPTR_0011s04990g [Populus trichocarpa]
Length = 395
Score = 49.3 bits (116), Expect(2) = 4e-08
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYY 306
Y D C+ ARN L GRKFGG+T+N SYYP+ K++ Y
Sbjct: 355 YSDTSSCANARNALNGRKFGGNTVNASYYPEDKYHNGDY 393
Score = 35.0 bits (79), Expect(2) = 4e-08
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRP EQI G GKV L+
Sbjct: 330 LINVVIPRPSQTEEQISGAGKVFLE 354
>ref|XP_002329812.1| predicted protein [Populus trichocarpa]
Length = 321
Score = 49.3 bits (116), Expect(2) = 5e-08
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYY 306
Y D C+ ARN L GRKFGG+T+N SYYP+ K++ Y
Sbjct: 256 YSDTSSCANARNALNGRKFGGNTVNASYYPEDKYHNGDY 294
Score = 35.0 bits (79), Expect(2) = 5e-08
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRP EQI G GKV L+
Sbjct: 231 LINVVIPRPSQTEEQISGAGKVFLE 255
>gb|EXB82788.1| Splicing factor U2af large subunit B [Morus notabilis]
Length = 530
Score = 42.7 bits (99), Expect(2) = 8e-07
Identities = 16/41 (39%), Positives = 28/41 (68%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D + C+ ARN L GRKFGG+ ++ +YP+ ++Y +++
Sbjct: 490 YADAVGCANARNVLNGRKFGGNIVHAVFYPEDRYYSRDFSA 530
Score = 37.4 bits (85), Expect(2) = 8e-07
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
++NVIIPRPD N E I GVGKV L+
Sbjct: 465 VVNVIIPRPDQNGETISGVGKVFLE 489
>sp|Q9ZR40.1|U2A2B_NICPL RecName: Full=Splicing factor U2af large subunit B; AltName:
Full=NpU2AF65b; AltName: Full=U2 auxiliary factor 65 kDa
subunit B; AltName: Full=U2 small nuclear
ribonucleoprotein auxiliary factor large subunit B;
Short=U2 snRNP auxiliary factor large subunit B
gi|3850821|emb|CAA77135.1| U2 snRNP auxiliary factor,
large subunit [Nicotiana plumbaginifolia]
Length = 573
Score = 42.4 bits (98), Expect(2) = 2e-06
Identities = 19/40 (47%), Positives = 26/40 (65%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYN 303
Y D+ SKAR +L GRKFGG+ + +YP+ KFY Y+
Sbjct: 533 YADVDSSSKARQSLNGRKFGGNQVVAVFYPENKFYEGDYD 572
Score = 36.2 bits (82), Expect(2) = 2e-06
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L+NV+IPRP N E PGVGKV L+
Sbjct: 508 LVNVVIPRPSPNGEPTPGVGKVFLE 532
>emb|CBI25913.3| unnamed protein product [Vitis vinifera]
Length = 6467
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D S ARN L GRKFGG+ ++ YYP+ K+Y Y +
Sbjct: 6427 YSDTAGSSSARNALSGRKFGGNVVSAVYYPEDKYYDGDYGA 6467
Score = 34.7 bits (78), Expect(2) = 6e-06
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L++V+IPRP N + IPGVGKV L+
Sbjct: 6402 LVHVVIPRPSPNGDLIPGVGKVFLE 6426
>ref|XP_002267854.2| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 410
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D S ARN L GRKFGG+ ++ YYP+ K+Y Y +
Sbjct: 370 YSDTAGSSSARNALSGRKFGGNVVSAVYYPEDKYYDGDYGA 410
Score = 34.7 bits (78), Expect(2) = 6e-06
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L++V+IPRP N + IPGVGKV L+
Sbjct: 345 LVHVVIPRPSPNGDLIPGVGKVFLE 369
>ref|XP_003635431.1| PREDICTED: splicing factor U2af large subunit B-like, partial
[Vitis vinifera]
Length = 238
Score = 42.4 bits (98), Expect(2) = 6e-06
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D S ARN L GRKFGG+ ++ YYP+ K+Y Y +
Sbjct: 198 YSDTAGSSSARNALSGRKFGGNVVSAVYYPEDKYYDGDYGA 238
Score = 34.7 bits (78), Expect(2) = 6e-06
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L++V+IPRP N + IPGVGKV L+
Sbjct: 173 LVHVVIPRPSPNGDLIPGVGKVFLE 197
>emb|CBI35711.3| unnamed protein product [Vitis vinifera]
Length = 116
Score = 42.4 bits (98), Expect(2) = 7e-06
Identities = 19/41 (46%), Positives = 25/41 (60%)
Frame = -2
Query: 422 YVDIIVCSKARNNLGGRKFGGSTMNYSYYPKAKFYGAYYNS 300
Y D S ARN L GRKFGG+ ++ YYP+ K+Y Y +
Sbjct: 76 YSDTAGSSSARNALSGRKFGGNVVSAVYYPEDKYYDGDYGA 116
Score = 34.7 bits (78), Expect(2) = 7e-06
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = -1
Query: 498 LMNVIIPRPDMNREQIPGVGKVSLD 424
L++V+IPRP N + IPGVGKV L+
Sbjct: 51 LVHVVIPRPSPNGDLIPGVGKVFLE 75