BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00020293
         (1238 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group] g...   320   2e-96
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz...   319   4e-96
gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indi...   319   4e-96
gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japoni...   314   7e-93
gb|ACY72569.1| unknown [Oryza sativa Japonica Group]                  310   7e-92
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   307   2e-91
gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subc...   300   5e-91
gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hop...   306   6e-91
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   296   8e-91
gb|AAB82754.1| retrofit [Oryza longistaminata]                        306   1e-90
gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group...   300   1e-90
gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis tha...   290   4e-90
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|...   301   7e-90
gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subc...   300   7e-90
ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [S...   296   7e-90
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group...   299   9e-90
gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sa...   297   3e-89
emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]   284   7e-89
gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thal...   288   2e-88
dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]                    288   2e-88

>ref|NP_001175678.1| Os08g0544300 [Oryza sativa Japonica Group]
            gi|255678617|dbj|BAH94406.1| Os08g0544300 [Oryza sativa
            Japonica Group]
          Length = 821

 Score =  320 bits (820), Expect(2) = 2e-96
 Identities = 150/305 (49%), Positives = 211/305 (69%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF PSK+D+SLF ++ G  ++F+L+Y+DD ++ 
Sbjct: 448  KLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIMA 507

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+ P+ ++  +  LS  F +KDL  ++Y LGIE ++   G+ LSQ KY  DLL R  M  
Sbjct: 508  SSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYE 567

Query: 361  CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++T+     +E       ++ QYRS+VG+LQYL  TRPD+SF++N+VCQF+H 
Sbjct: 568  CKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHA 627

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRY+   VD   K    P   +S FS A+W G P DRRST  + +FLG
Sbjct: 628  PTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLG 687

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TEAEY+ALA+AT E +W+Q+LL EL +  P+   LWCDN+GA
Sbjct: 688  PNLVSWSARKQATVSRSSTEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGA 747

Query: 895  TYLAS 909
             YL++
Sbjct: 748  KYLSA 752



 Score = 61.2 bits (147), Expect(2) = 2e-96
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NPI + R KH+ +D+HFVRERV  K L +A++S+ DQ  D  TK +P+ +   
Sbjct: 746  GAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEM 805

Query: 1068 LRSQLGL 1088
             ++ L L
Sbjct: 806  FKNNLNL 812


>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
            Group]
          Length = 1399

 Score =  319 bits (817), Expect(2) = 4e-96
 Identities = 150/305 (49%), Positives = 210/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF PSK+D+SLF ++ G  ++F+L+Y+DD +V 
Sbjct: 1026 KLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVA 1085

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+ P+ ++  +  LS  F +KDL  ++Y LGIE ++   G+ LSQ KY  DLL R  M  
Sbjct: 1086 SSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYE 1145

Query: 361  CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++T+     +E       ++ QYRS+VG+LQYL  TRPD+SF++N+VCQF+H 
Sbjct: 1146 CKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHA 1205

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRY+   VD   K    P   +S FS A+W G P DRRST  + +FLG
Sbjct: 1206 PTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLG 1265

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+ EAEY+ALA+AT E +W+Q+LL EL +  P+   LWCDN+GA
Sbjct: 1266 PNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGA 1325

Query: 895  TYLAS 909
             YL++
Sbjct: 1326 KYLSA 1330



 Score = 61.2 bits (147), Expect(2) = 4e-96
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NPI + R KH+ +D+HFVRERV  K L +A++S+ DQ  D  TK +P+ +   
Sbjct: 1324 GAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEM 1383

Query: 1068 LRSQLGL 1088
             ++ L L
Sbjct: 1384 FKNNLNL 1390


>gb|EEC76475.1| hypothetical protein OsI_14210 [Oryza sativa Indica Group]
          Length = 391

 Score =  319 bits (817), Expect(2) = 4e-96
 Identities = 150/305 (49%), Positives = 210/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1   KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
           KL K+LYGLKQ+PRAW+++    L  +GF PSK+D+SLF ++ G  ++F+L+Y+DD +V 
Sbjct: 18  KLDKALYGLKQAPRAWYSRLSTKLSELGFVPSKADTSLFFYKKGQVSIFLLIYVDDIIVA 77

Query: 181 STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
           S+ P+ ++  +  LS  F +KDL  ++Y LGIE ++   G+ LSQ KY  DLL R  M  
Sbjct: 78  SSVPDATSTLLQELSKDFALKDLGDLHYFLGIEVHKVKDGLMLSQEKYASDLLRRVGMYE 137

Query: 361 CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
           CKP++TP++T+     +E       ++ QYRS+VG+LQYL  TRPD+SF++N+VCQF+H 
Sbjct: 138 CKPVSTPLSTSEKLSVNEGTLLGPQDSTQYRSVVGALQYLTLTRPDISFSINKVCQFLHA 197

Query: 535 PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
           P   HW AVKRILRY+   VD   K    P   +S FS A+W G P DRRST  + +FLG
Sbjct: 198 PTTTHWAAVKRILRYVKYTVDTGLKFCRNPSLLVSGFSDADWAGSPDDRRSTGGFAVFLG 257

Query: 715 SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
            NL+SW   KQATV+RS+ EAEY+ALA+AT E +W+Q+LL EL +  P+   LWCDN+GA
Sbjct: 258 PNLVSWSARKQATVSRSSIEAEYKALANATAEIMWVQTLLQELGVESPRAAKLWCDNLGA 317

Query: 895 TYLAS 909
            YL++
Sbjct: 318 KYLSA 322



 Score = 61.2 bits (147), Expect(2) = 4e-96
 Identities = 27/67 (40%), Positives = 40/67 (59%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NPI + R KH+ +D+HFVRERV  K L +A++S+ DQ  D  TK +P+ +   
Sbjct: 316  GAKYLSANPIFHARTKHIEVDFHFVRERVARKLLEIAYISTKDQVADGFTKAIPVRQMEM 375

Query: 1068 LRSQLGL 1088
             ++ L L
Sbjct: 376  FKNNLNL 382


>gb|AAN06870.1| Putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|108706314|gb|ABF94109.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1247

 Score =  314 bits (805), Expect(2) = 7e-93
 Identities = 153/305 (50%), Positives = 207/305 (67%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  MGF  SK+D+SLF +  G   +F+L+Y+DD +V 
Sbjct: 880  KLDKALYGLKQAPRAWYSRLSKKLYDMGFQGSKADTSLFFYNKGDLIIFVLIYVDDIIVT 939

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+  E     +  L  +F +KDL  ++Y LGIE  +   GI L+Q KY+ DLL R NM +
Sbjct: 940  SSRQEAVPALLRDLQKEFALKDLGDLHYFLGIEVTKVSGGIVLTQDKYVNDLLRRVNMFD 999

Query: 361  CKPINTPMATNFT-SCTDESPHFPN-APQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++T+   S  +  P  PN A  YRS+VG+LQYL  TRPD++F VN+VCQF+H 
Sbjct: 1000 CKPVSTPLSTSEKLSINEGDPLGPNDATHYRSVVGALQYLTLTRPDIAFPVNKVCQFLHA 1059

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRYL     +  KLS      +S +S A+W G   DRRST  + +FLG
Sbjct: 1060 PTTHHWAAVKRILRYLKQCTRLGLKLSKSRSMLVSAYSDADWAGSLDDRRSTGGFAVFLG 1119

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TE+EY+ALA+AT E +W+Q+LLAELQ+  P    LWCDN+GA
Sbjct: 1120 DNLVSWSARKQATVSRSSTESEYKALANATAEIMWVQTLLAELQVESPSMAKLWCDNLGA 1179

Query: 895  TYLAS 909
             YL++
Sbjct: 1180 KYLSA 1184



 Score = 55.1 bits (131), Expect(2) = 7e-93
 Identities = 27/67 (40%), Positives = 36/67 (53%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L + FV + DQ  D  TK L + +   
Sbjct: 1178 GAKYLSANPVFHARTKHIEVDYHFVRERVSRKLLEIDFVPTGDQVADGFTKALSVRQLEN 1237

Query: 1068 LRSQLGL 1088
             +  L L
Sbjct: 1238 FKYNLNL 1244


>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
          Length = 1436

 Score =  310 bits (794), Expect(2) = 7e-92
 Identities = 151/305 (49%), Positives = 210/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    LV +GF  SK+D+SLF    G   +F+LVY+DD ++ 
Sbjct: 1069 KLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGIIMFVLVYVDDIIIA 1128

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+T + +T  +  L+ +F +KDL  ++Y LGIE  + P GI L+Q KY  DLL+R NMSN
Sbjct: 1129 SSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVPNGIVLTQEKYANDLLKRVNMSN 1188

Query: 361  CKPINTPMATNFTSCTDE-SPHFPN-APQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++ +      E SP  PN A QYRSIVG+LQYL  TRPD++++VN+VCQF+H 
Sbjct: 1189 CKPVSTPLSVSEKLTLYEGSPLGPNDATQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHA 1248

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRYLN    +   +       +  +S A+W G   DR+ST  + +FLG
Sbjct: 1249 PTTDHWTAVKRILRYLNQCTSLGLNIHKSASTLVHGYSDADWAGSVDDRKSTGGFAVFLG 1308

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
            SNL+SW   KQ TV+RS+TEAEY+A+A+ T E +W+Q+LL EL I  P+   +WCDN+GA
Sbjct: 1309 SNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLRELGIDSPKAAKIWCDNLGA 1368

Query: 895  TYLAS 909
             YL++
Sbjct: 1369 KYLSA 1373



 Score = 55.8 bits (133), Expect(2) = 7e-92
 Identities = 28/67 (41%), Positives = 35/67 (52%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L + FV S DQ  D  TK L +     
Sbjct: 1367 GAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSVRLLEH 1426

Query: 1068 LRSQLGL 1088
             +  L L
Sbjct: 1427 FKHNLNL 1433


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  307 bits (787), Expect(2) = 2e-91
 Identities = 153/306 (50%), Positives = 207/306 (67%), Gaps = 4/306 (1%)
 Frame = +1

Query: 4    LQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVFS 183
            LQKSLYGLKQ PRAW+++  + L ++GF PSK+D SLFI+     A++ILVY+DD ++  
Sbjct: 1067 LQKSLYGLKQRPRAWYSRLSEKLQSLGFVPSKADVSLFIYNAHSTAIYILVYVDDIIITG 1126

Query: 184  TTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSNC 363
            ++P      +  L   F +KDL  ++Y LGIE +R   G+ L Q KY +DLL+R  M  C
Sbjct: 1127 SSPHAIDNVLAKLKDDFAIKDLGDLHYFLGIEVHRKGDGLLLCQEKYARDLLKRVGMECC 1186

Query: 364  KPINTPMATN----FTSCTDESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMH 531
            KP++TP+AT+     ++ T  SP      +YRS+VG+LQYL  TRPD+S+ +NRVCQF+H
Sbjct: 1187 KPVHTPVATSEKLSASAGTLLSPE--ETTKYRSVVGALQYLTLTRPDLSYAINRVCQFLH 1244

Query: 532  KPQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFL 711
             P + HW AVKRILR +   + +   +       LS FS A+W G P DR+ST  Y +FL
Sbjct: 1245 APTDLHWTAVKRILRNIQHTIGLGLTIRPSLSLMLSAFSDADWAGCPDDRKSTGGYALFL 1304

Query: 712  GSNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMG 891
            G NLISW   KQ+TV+RS+TEAEY+A+A+AT E +W+QSLL EL I L   P LWCDN+G
Sbjct: 1305 GPNLISWNSKKQSTVSRSSTEAEYKAMANATAEVIWLQSLLHELGIRLTGIPRLWCDNLG 1364

Query: 892  ATYLAS 909
            ATYL+S
Sbjct: 1365 ATYLSS 1370



 Score = 57.0 bits (136), Expect(2) = 2e-91
 Identities = 28/56 (50%), Positives = 36/56 (64%)
 Frame = +3

Query: 912  PILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVCLRSQ 1079
            PI   R KH+ +D+HFVR+RVLSK L++  +S+NDQ  D  TK L I R    R Q
Sbjct: 1372 PIFNARTKHIEVDFHFVRDRVLSKKLDIRLISTNDQVADGFTKALTIGRLNEFRRQ 1427


>gb|ABA95721.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 900

 Score =  300 bits (767), Expect(2) = 5e-91
 Identities = 147/314 (46%), Positives = 202/314 (64%), Gaps = 11/314 (3%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF+ SK+D+SLF +  G H +F+LVY+DD +V 
Sbjct: 525  KLDKALYGLKQAPRAWYSRLSKKLQELGFSSSKADTSLFFYNKGHHKMFVLVYVDDIIVA 584

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++       +  L   F +KDL  ++Y LGIE  R+P  + LSQ +Y  +LLER NM++
Sbjct: 585  SSSSPAVNALLKDLEKDFALKDLGDLHYFLGIEVKRTPQTLLLSQERYTTELLERVNMTS 644

Query: 361  CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++T      +        +  QYRSIVG+LQYL  TRPD+S++VN+VCQF+  
Sbjct: 645  CKPVSTPLSTAEKLSVEIGDELGPSDVTQYRSIVGALQYLTLTRPDISYSVNKVCQFLQT 704

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDP---------LDRRS 687
            P   HW AVKRILRYL   +D+  K+       +S FS A+W G            DRRS
Sbjct: 705  PTTAHWSAVKRILRYLKGTLDLGLKIVKSSSNLVSAFSDADWAGSVDDRRSTGGFADRRS 764

Query: 688  TSAYCIFLGSNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPP 867
            T  + +F G NLISW   KQATV+RS+TEAEY+ALA+A  E +W++ LL EL I  P   
Sbjct: 765  TGGFAVFFGDNLISWSARKQATVSRSSTEAEYKALANAAAEIIWVRKLLTELGILHPNAA 824

Query: 868  TLWCDNMGATYLAS 909
             LWCDN+GATY+ +
Sbjct: 825  RLWCDNLGATYMTA 838



 Score = 63.5 bits (153), Expect(2) = 5e-91
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRE+V  K L++ FVSS DQ  D  TKP+ + + + 
Sbjct: 832  GATYMTANPVFHARTKHIEVDYHFVREQVAQKLLDIHFVSSQDQVADGFTKPISLQQLIG 891

Query: 1068 LRSQLGL 1088
             R  L L
Sbjct: 892  FRHNLNL 898


>gb|AAL66754.1|AF464738_5 putative copia-like retrotransposon Hopscotch polyprotein [Zea mays]
          Length = 1313

 Score =  306 bits (784), Expect(2) = 6e-91
 Identities = 146/305 (47%), Positives = 209/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++  + L+++GF  SK+D+SLF +  G   +F+LVY+DD +V 
Sbjct: 946  KLDKALYGLKQAPRAWYSRLSNKLLSLGFQASKADTSLFFYNKGSVTIFVLVYVDDIIVA 1005

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+T + +   ++ L+ +F +KDL  +NY LGIE  +   GI L+Q KY  DLL++  MS+
Sbjct: 1006 SSTHKATEALLSDLNKEFALKDLGDLNYFLGIEVNKVRDGIILTQDKYASDLLKKVGMSD 1065

Query: 361  CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKPI+TP++T+      E       +  QYRSIVG+LQYL  TRPD++F+VN+VCQF+H 
Sbjct: 1066 CKPISTPLSTSEKLSIHEGSPLGEKDITQYRSIVGALQYLTLTRPDIAFSVNKVCQFLHA 1125

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRY+    ++   +       +S FS A+W G   DR+ST  + +FLG
Sbjct: 1126 PTTLHWAAVKRILRYIKQCTNLGLHIHRSDSTLVSAFSDADWAGSVDDRKSTGGFAVFLG 1185

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
            SNL+SW   KQ TV+RS+TE+EY+ALA+AT E +W+Q LL E+ I  P+   LWCDN+GA
Sbjct: 1186 SNLVSWSARKQPTVSRSSTESEYKALANATAELIWVQILLTEISIKSPRAAKLWCDNLGA 1245

Query: 895  TYLAS 909
             YL++
Sbjct: 1246 KYLSA 1250



 Score = 56.6 bits (135), Expect(2) = 6e-91
 Identities = 25/55 (45%), Positives = 34/55 (61%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPI 1052
            G      NPI + R KH+ +DYHFVR+RV  K L++ +V + DQ  D  TKPL +
Sbjct: 1244 GAKYLSANPIFHARTKHIEVDYHFVRDRVAKKLLDIEYVPTGDQVADGFTKPLSV 1298


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  296 bits (759), Expect(2) = 8e-91
 Identities = 146/305 (47%), Positives = 204/305 (66%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAWF++    L+ +GF  SK D+SLF    G   +F+LVY+DD +V 
Sbjct: 1086 KLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKPDTSLFFLNKGDITMFVLVYVDDIIVA 1145

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++ + +   +  L  +F +KDL  ++Y LGIE  +   GI L+Q KY  DLL++  M +
Sbjct: 1146 SSSEKATAALLQDLKGEFALKDLGELHYFLGIEVSKVQNGIVLNQDKYANDLLKKVGMID 1205

Query: 361  CKPINTPMATNFTSCTDESPHF--PNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP NTP++ +      E       +A  YRS+VG+LQYL  TRPD++F+VN+VCQF+H 
Sbjct: 1206 CKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVVGALQYLTLTRPDIAFSVNKVCQFLHA 1265

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRYL     +  ++       +S FS A+W G   DRRST  + IFLG
Sbjct: 1266 PTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLVSGFSDADWAGCLDDRRSTGGFAIFLG 1325

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
            SNL+SW   KQATV+RS+TE+EY+A+A+AT E +W+Q+LLAEL+I  P+   +WCDN+GA
Sbjct: 1326 SNLVSWNARKQATVSRSSTESEYKAIANATAEIMWVQTLLAELEIKSPKAAKIWCDNLGA 1385

Query: 895  TYLAS 909
             YL++
Sbjct: 1386 KYLSA 1390



 Score = 65.9 bits (159), Expect(2) = 8e-91
 Identities = 33/73 (45%), Positives = 41/73 (56%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L + FVS+NDQ  D  TKPL +     
Sbjct: 1384 GAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVSTNDQVADGFTKPLSVRLLEN 1443

Query: 1068 LRSQLGLAPFGSR 1106
             +S L L   G R
Sbjct: 1444 FKSNLNLVRSGLR 1456


>gb|AAB82754.1| retrofit [Oryza longistaminata]
          Length = 1445

 Score =  306 bits (783), Expect(2) = 1e-90
 Identities = 150/305 (49%), Positives = 209/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    LV +GF  SK+D+SLF    G   +F+LVY+DD +V 
Sbjct: 1078 KLDKALYGLKQAPRAWYSRLSKKLVELGFEASKADTSLFFLNKGGILMFVLVYVDDIIVA 1137

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+T + +T  +  L+ +F +KDL  ++Y LGIE  +   G+ L+Q KY  DLL+R NMSN
Sbjct: 1138 SSTEKATTALLKDLNKEFALKDLGDLHYFLGIEVTKVSNGVILTQEKYANDLLKRVNMSN 1197

Query: 361  CKPINTPMATNFTSCTDE-SPHFPN-APQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++ +      E SP  PN A QYRSIVG+LQYL  TRPD++++VN+VCQF+H 
Sbjct: 1198 CKPVSTPLSVSEKLTLYEGSPLGPNDAIQYRSIVGALQYLTLTRPDIAYSVNKVCQFLHA 1257

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRYLN    +   +       +  +S A+W G   DR+ST  + +FLG
Sbjct: 1258 PTTSHWIAVKRILRYLNQCTSLGLHIHKSASTLVHGYSDADWAGSIDDRKSTGGFAVFLG 1317

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
            SNL+SW   KQ TV+RS+TEAEY+A+A+ T E +W+Q+LL EL I  P+   +WCDN+GA
Sbjct: 1318 SNLVSWSARKQPTVSRSSTEAEYKAVANTTAELIWVQTLLKELGIESPKAAKIWCDNLGA 1377

Query: 895  TYLAS 909
             YL++
Sbjct: 1378 KYLSA 1382



 Score = 55.8 bits (133), Expect(2) = 1e-90
 Identities = 29/68 (42%), Positives = 35/68 (51%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L + FV S DQ  D  TK L       
Sbjct: 1376 GAKYLSANPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPSGDQVADGFTKALSACLLEN 1435

Query: 1068 LRSQLGLA 1091
             +  L LA
Sbjct: 1436 FKHNLNLA 1443


>gb|AAT85031.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|108708884|gb|ABF96679.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1437

 Score =  300 bits (767), Expect(2) = 1e-90
 Identities = 147/304 (48%), Positives = 203/304 (66%), Gaps = 2/304 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF  SK+D+SLF +  G   +F+L+Y+DD +V 
Sbjct: 1064 KLDKALYGLKQAPRAWYSRLSGKLHDLGFKGSKADTSLFFYNKGSLTIFLLIYVDDIIVV 1123

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+  E  +  +  L  +F +KDL  ++Y LGIE  + P GI +SQ KY  DLL+R NMS+
Sbjct: 1124 SSRKEAVSALLQDLQKEFALKDLGDLHYFLGIEVTKIPGGILMSQEKYASDLLKRVNMSD 1183

Query: 361  CKPINTPMATNFTSCTDESPHF-PN-APQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CK + TP++ +      +     PN A QYRSIVG+LQYL  TR D++F+VN+VCQF+H 
Sbjct: 1184 CKSVATPLSASEKLIAGKGTILGPNDATQYRSIVGALQYLTLTRLDIAFSVNKVCQFLHN 1243

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P  +HW AVKRILRY+     +  ++       +S +S A+W G   DRRST  + ++LG
Sbjct: 1244 PTTEHWAAVKRILRYIKQCTGLGLRICKSSSMIVSGYSDADWAGCLDDRRSTGGFAVYLG 1303

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TEAEY+ALA+AT E +W+Q+LL EL I  P    LWCDNMGA
Sbjct: 1304 DNLVSWNAKKQATVSRSSTEAEYKALANATAEIMWVQTLLQELNIVSPAMAQLWCDNMGA 1363

Query: 895  TYLA 906
             YL+
Sbjct: 1364 KYLS 1367



 Score = 62.0 bits (149), Expect(2) = 1e-90
 Identities = 29/60 (48%), Positives = 38/60 (63%)
 Frame = +3

Query: 909  NPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVCLRSQLGL 1088
            NP+ + R KH+ +DYHFVRERV  K L V +VS+NDQ  D  TK LP+ +    +  L L
Sbjct: 1369 NPVFHARTKHIEVDYHFVRERVARKLLQVDYVSTNDQVADGFTKALPVKQLENFKYNLNL 1428


>gb|AAK43485.1|AC084807_10 polyprotein, putative [Arabidopsis thaliana]
            gi|225898008|dbj|BAH30336.1| hypothetical protein
            [Arabidopsis thaliana]
          Length = 1459

 Score =  290 bits (743), Expect(2) = 4e-90
 Identities = 143/303 (47%), Positives = 205/303 (67%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            +L+K++YGLKQ+PRAW+ + +  L+ +GF  S +D+SLFI+ +G   +++LVY+DD +V 
Sbjct: 1091 RLRKAIYGLKQAPRAWYMELKQHLLNIGFVNSLADTSLFIYSHGTTLLYLLVYVDDIIVT 1150

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
             +  +  +  +++L+ +F +KD + ++Y LGIEA R+  G+ L Q KY+ DLL + NM +
Sbjct: 1151 GSDHKSVSAVLSSLAERFSIKDPTDLHYFLGIEATRTNTGLHLMQRKYMTDLLAKHNMLD 1210

Query: 361  CKPINTPMATNFTSCTDESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHKPQ 540
             KP+ TP+ T+            +A +YRS+VGSLQYLAFTRPD++F VNR+ QFMH+P 
Sbjct: 1211 AKPVATPLPTSPKLTLHGGTKLNDASEYRSVVGSLQYLAFTRPDIAFAVNRLSQFMHQPT 1270

Query: 541  EKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLGSN 720
              HWQA KR+LRYL         L+S    HL  FS A+W GD  D  ST+AY I+LG N
Sbjct: 1271 SDHWQAAKRVLRYLAGTTTHGIFLNSSSPIHLHAFSDADWAGDSADYVSTNAYVIYLGRN 1330

Query: 721  LISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGATY 900
             ISW   KQ  V+RS+TE+EYRA+A+A  E  W+ SLL EL I LP  PT++CDN+GATY
Sbjct: 1331 PISWSSKKQRGVSRSSTESEYRAVANAASEIRWLCSLLTELHIRLPHGPTIFCDNIGATY 1390

Query: 901  LAS 909
            + +
Sbjct: 1391 ICA 1393



 Score = 69.7 bits (169), Expect(2) = 4e-90
 Identities = 32/67 (47%), Positives = 44/67 (65%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G    C NP+ + R+KH+ LDYHFVR  + S+AL V+ VS+NDQ  D LTK L    F+ 
Sbjct: 1387 GATYICANPVFHSRMKHIALDYHFVRGMIQSRALRVSHVSTNDQLADALTKSLSRPHFLS 1446

Query: 1068 LRSQLGL 1088
             RS++G+
Sbjct: 1447 ARSKIGV 1453


>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
            gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1447

 Score =  301 bits (770), Expect(2) = 7e-90
 Identities = 147/305 (48%), Positives = 200/305 (65%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF  SK D+SLF +  G   +F+L+Y+DD +V 
Sbjct: 1080 KLDKALYGLKQAPRAWYSRLSKKLYDLGFQGSKGDTSLFFYNKGGLIIFVLIYVDDIIVT 1139

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S+  E  +  +  L  +F +KDL  ++Y LGIE  +    I L+Q KY  DLL R NM +
Sbjct: 1140 SSRQEAVSALLQDLKKEFALKDLGDLHYFLGIEVNKVTDEIILTQDKYACDLLRRVNMFD 1199

Query: 361  CKPINTPMATNFTSCTDESPHFP--NAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP++TP++T+      E       +A  YRS+VG+LQYL  TRPD++F VN+VCQF+H 
Sbjct: 1200 CKPVSTPLSTSEKLSAHEGDLLGPLDATNYRSVVGALQYLTLTRPDIAFPVNKVCQFLHA 1259

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRYL     +  KL       +S +S A+W G   DRRST  + +FLG
Sbjct: 1260 PTTVHWAAVKRILRYLKQCTKLGLKLCKSKSMLVSAYSDADWAGSLDDRRSTGGFAVFLG 1319

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TE+EY+ALA+AT E +W+Q+LL ELQ+  P    LWCDN+GA
Sbjct: 1320 DNLVSWCARKQATVSRSSTESEYKALANATAEIMWVQTLLTELQVQSPPMAKLWCDNLGA 1379

Query: 895  TYLAS 909
             YL+S
Sbjct: 1380 KYLSS 1384



 Score = 58.5 bits (140), Expect(2) = 7e-90
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +3

Query: 909  NPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVCLRSQLGL 1088
            NP+ + R KH+ +DYHFVRERV  K L + FV + DQ  D  TK LP+ +    +  L L
Sbjct: 1385 NPVFHARTKHIEVDYHFVRERVSQKLLEIDFVPTGDQVADGFTKALPVRQLENFKHNLNL 1444


>gb|AAP53968.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 932

 Score =  300 bits (768), Expect(2) = 7e-90
 Identities = 148/305 (48%), Positives = 200/305 (65%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF  SK+D+SLF +  G   +FILVY+DD +V 
Sbjct: 567  KLDKALYGLKQAPRAWYSRLSTKLQELGFISSKADTSLFFYNKGGCTIFILVYVDDIIVA 626

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++ E+    +  L   F +KDL  ++Y LGIE  +   G+ LSQ+ Y  D+L+R  MS 
Sbjct: 627  SSSAEVVAALLKDLEKDFALKDLGDLHYFLGIEVKKVSQGLVLSQAWYASDILKRAGMSI 686

Query: 361  CKPINTPMATNFTSCTDESPHFP--NAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CKP +TP++T      ++       +A  YRSIVG+LQYL  TR D+SF VN+VCQF+H 
Sbjct: 687  CKPASTPLSTTEKLSIEDGDFLGQNDASHYRSIVGALQYLTLTRSDLSFLVNKVCQFLHS 746

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   HW AVKRILRY+   V+   +        +S FS A+W G   DRRST  + +FLG
Sbjct: 747  PTTVHWSAVKRILRYIKGTVEFGLRFGKSDSMLISAFSDADWAGCSDDRRSTGGFAVFLG 806

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NLISW   KQATV+RS+TEAEY+ALA+AT E  W++ +L EL+IA P    LWCDN+GA
Sbjct: 807  PNLISWSARKQATVSRSSTEAEYKALANATTEVTWVRKILDELRIARPSVAQLWCDNLGA 866

Query: 895  TYLAS 909
            TYL++
Sbjct: 867  TYLSA 871



 Score = 59.3 bits (142), Expect(2) = 7e-90
 Identities = 27/60 (45%), Positives = 36/60 (60%)
 Frame = +3

Query: 909  NPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVCLRSQLGL 1088
            NP+ + R KH+ +DYHFVRE+V  K L++ F+S+ DQ  D  TK LP       R  L L
Sbjct: 872  NPVFHARTKHIEIDYHFVREQVAKKLLDIQFISTTDQLADGFTKSLPAPSLAQYRHNLNL 931


>ref|XP_002442174.1| hypothetical protein SORBIDRAFT_08g015513 [Sorghum bicolor]
            gi|241942867|gb|EES16012.1| hypothetical protein
            SORBIDRAFT_08g015513 [Sorghum bicolor]
          Length = 757

 Score =  296 bits (757), Expect(2) = 7e-90
 Identities = 147/305 (48%), Positives = 205/305 (67%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL+K+LY LKQ+PRAW+A+    L+++ F  S++D+SLF +  G H +F+LVY+DD +V 
Sbjct: 398  KLEKALYELKQAPRAWYARLSSKLISLRFKSSRADTSLFYYNKGGHTIFVLVYVDDIIVA 457

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++ E +   ++ L   F +KDL  ++Y LGIE  R   G+ LSQ KY  D+L R+ MS 
Sbjct: 458  SSSLEATKVLLSDLQKDFALKDLGDLHYFLGIEVKRDSNGLVLSQGKYANDILVRSGMSK 517

Query: 361  CKPINTPM-ATNFTSCTD-ESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
             KP++TP+ +T   S TD +     +  +YRS+VG+LQYL  TRPD+SF VN+VCQF+H 
Sbjct: 518  SKPVHTPLPSTQKISITDGDKLGEEDCTRYRSLVGALQYLTLTRPDISFAVNKVCQFLHA 577

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P   H  AVKRILRY+        ++     + +S FS A+W GD  DRRST  + +FLG
Sbjct: 578  PTTTHLSAVKRILRYIQGTSKFGLRIRKSKCRIVSAFSYADWAGDVDDRRSTGGFAVFLG 637

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NLISW   KQATV+RS+TEAEY+ALA+AT E +W+Q LLAEL +   +   LWCDN+GA
Sbjct: 638  ENLISWTAQKQATVSRSSTEAEYKALANATAEVMWVQKLLAELCVPHARVARLWCDNLGA 697

Query: 895  TYLAS 909
             YL++
Sbjct: 698  KYLSA 702



 Score = 63.5 bits (153), Expect(2) = 7e-90
 Identities = 27/58 (46%), Positives = 38/58 (65%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRF 1061
            G      NP+ + R KH+ +D+HFVRERV  K L++ F+SS DQ  D  TK LP+++F
Sbjct: 696  GAKYLSANPVFHARTKHIEIDFHFVRERVAQKLLDIRFISSEDQLADGFTKSLPVTKF 753


>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
            gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
            sativa Japonica Group]
          Length = 1431

 Score =  299 bits (766), Expect(2) = 9e-90
 Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF  SKSD+SLF +  G  A+F+LVY+DD +V 
Sbjct: 1063 KLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVAMFMLVYVDDIIVA 1122

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++ + +   +  L+ +F +KDL  ++Y LGIE      GI L+Q KY  D+L+R NMS+
Sbjct: 1123 SSSIDATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNNGIVLTQEKYAMDVLKRVNMSD 1182

Query: 361  CKPINTPMA-TNFTSCTDESPHFP-NAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CK +NTP++ +   S  + +P  P ++ +YRS+VG+LQYL  TRPD+SF+VN+VCQ++H 
Sbjct: 1183 CKAVNTPLSISEKLSAHEGNPFGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHA 1242

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
            P  KHW A KRILRYL   V +  K+S      +S FS A+W G   DR ST  + +F+G
Sbjct: 1243 PTTKHWAAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRHSTGGFAVFIG 1302

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TEAEY+ALA+ T E +WIQ+LL EL I  P+   +WCDN+GA
Sbjct: 1303 PNLVSWSARKQATVSRSSTEAEYKALANVTAEIMWIQTLLHELGIQAPKIAKVWCDNIGA 1362

Query: 895  TYLAS 909
             Y+ +
Sbjct: 1363 KYMTA 1367



 Score = 59.7 bits (143), Expect(2) = 9e-90
 Identities = 28/67 (41%), Positives = 38/67 (56%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L V ++S+ DQ  D  TK L + +   
Sbjct: 1361 GAKYMTANPVFHARTKHIEVDYHFVRERVARKFLQVEYISTKDQVADGFTKTLSVRQLEM 1420

Query: 1068 LRSQLGL 1088
             R+ L L
Sbjct: 1421 FRNNLNL 1427


>gb|AAK55460.1|AC069300_15 putative gag-pol polyprotein [Oryza sativa Japonica Group]
            gi|31433472|gb|AAP54977.1| retrotransposon protein,
            putative, Ty1-copia subclass [Oryza sativa Japonica
            Group]
          Length = 1031

 Score =  297 bits (760), Expect(2) = 3e-89
 Identities = 148/305 (48%), Positives = 209/305 (68%), Gaps = 2/305 (0%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL K+LYGLKQ+PRAW+++    L  +GF  SKSD+SLF +  G   +F+LVY+DD +V 
Sbjct: 663  KLDKALYGLKQAPRAWYSRLSTKLHELGFKSSKSDTSLFFYSKGDVTIFMLVYVDDIIVA 722

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
            S++   +   +  L+ +F +KDL  ++Y LGIE      GI L+Q KY  D+L+R NMS+
Sbjct: 723  SSSIVATNALLKNLNQEFALKDLGRLHYFLGIEVKEVNDGIVLTQEKYAMDVLKRVNMSD 782

Query: 361  CKPINTPMA-TNFTSCTDESPHFP-NAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHK 534
            CK +NTP++ +   S  + +P  P ++ +YRS+VG+LQYL  TRPD+SF+VN+VCQ++H 
Sbjct: 783  CKAVNTPLSISEKLSAHEGNPLGPEDSTRYRSLVGALQYLTLTRPDLSFSVNKVCQYLHA 842

Query: 535  PQEKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLG 714
               KHW A KRILRYL   V +  K+S      +S FS A+W G   DRRST  + +F+G
Sbjct: 843  ATTKHWVAAKRILRYLKHTVKLGLKISKSNSLLVSAFSDADWAGCLDDRRSTGGFAVFIG 902

Query: 715  SNLISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGA 894
             NL+SW   KQATV+RS+TEAEY+ALA+AT E +WIQ+LL EL I +P+   +WCDN+GA
Sbjct: 903  PNLVSWSARKQATVSRSSTEAEYKALANATAEIMWIQTLLHELGIQVPKIAKVWCDNIGA 962

Query: 895  TYLAS 909
             Y+ +
Sbjct: 963  KYMTA 967



 Score = 60.1 bits (144), Expect(2) = 3e-89
 Identities = 28/67 (41%), Positives = 38/67 (56%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G      NP+ + R KH+ +DYHFVRERV  K L V ++S+ DQ  D  TK L + +   
Sbjct: 961  GAKYMTANPVFHARTKHIEVDYHFVRERVARKLLQVEYISTKDQVADGFTKTLSVRQLEM 1020

Query: 1068 LRSQLGL 1088
             R+ L L
Sbjct: 1021 FRNNLNL 1027


>emb|CAN61230.1| hypothetical protein VITISV_010115 [Vitis vinifera]
          Length = 478

 Score =  284 bits (727), Expect(2) = 7e-89
 Identities = 144/303 (47%), Positives = 194/303 (64%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL+K++YGLKQ+PRAW+ +    L+  GF  S +D+SLFI       +++LVY+DD ++ 
Sbjct: 99   KLRKAIYGLKQAPRAWYHELCQFLLQFGFINSIADTSLFIFNNHDTILYLLVYVDDIIIT 158

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
                E +  F+  LS +F +KDL P+ Y LG+E      G+FLSQ KYI DLL RT+M+ 
Sbjct: 159  GNNVEAAQTFIQQLSQRFSLKDLGPLTYFLGVEVTSHTNGLFLSQRKYIADLLNRTHMTE 218

Query: 361  CKPINTPMATNFTSCTDESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHKPQ 540
             KP  TP+AT+            +  +YR++VGSLQYL+ TRPD+++TVN++ QFMH+P 
Sbjct: 219  AKPAPTPLATSPILTLQSGTPLSDPTEYRTVVGSLQYLSLTRPDIAYTVNKLSQFMHQPT 278

Query: 541  EKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLGSN 720
              HW AVKR+LRYL   +D    L       L  FS ++W G+  D  STSAY I+LG N
Sbjct: 279  SDHWNAVKRLLRYLCGTLDHDITLRRTSPLALHAFSDSDWAGNKDDFTSTSAYIIYLGHN 338

Query: 721  LISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGATY 900
             ISW   KQ TVARS+TEAEYR++A    E  WI SLL EL + LPQ P ++CDN+GAT 
Sbjct: 339  PISWSSKKQRTVARSSTEAEYRSVASTAAEIRWICSLLTELGVTLPQQPVIYCDNVGATN 398

Query: 901  LAS 909
            L S
Sbjct: 399  LCS 401



 Score = 71.6 bits (174), Expect(2) = 7e-89
 Identities = 31/64 (48%), Positives = 47/64 (73%)
 Frame = +3

Query: 903  CVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVCLRSQL 1082
            C NP+ + R+KH+ LDYHF+RE+V +  L V+ +S++DQ  D LTKPL   +F  L++++
Sbjct: 400  CSNPVFHSRMKHVALDYHFIREQVQNGLLRVSHISASDQLADALTKPLARPQFDSLKAKI 459

Query: 1083 GLAP 1094
            GLAP
Sbjct: 460  GLAP 463


>gb|AAK62788.1|AC027036_9 polyprotein, putative [Arabidopsis thaliana]
            gi|18265373|dbj|BAB84015.1| polyprotein [Arabidopsis
            thaliana]
          Length = 1466

 Score =  288 bits (738), Expect(2) = 2e-88
 Identities = 151/303 (49%), Positives = 199/303 (65%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL+K+LYGLKQ+PRAW+ + R+ L+T+GF  S SD+SLF+ + G   V++LVY+DD L+ 
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
               P L    ++ LS +F VKD   ++Y LGIEA R P G+ LSQ +YI DLL RTNM  
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 361  CKPINTPMATNFTSCTDESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHKPQ 540
             KP+ TPMA +            +  +YR IVGSLQYLAFTRPD+S+ VNR+ QFMH P 
Sbjct: 1218 AKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

Query: 541  EKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLGSN 720
            E+H QA+KRILRYL    +    L       L  +S A+W GD  D  ST+ Y ++LG +
Sbjct: 1278 EEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHH 1337

Query: 721  LISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGATY 900
             ISW   KQ  V RS+TEAEYR++A+ + E  WI SLL EL I L +PP ++CDN+GATY
Sbjct: 1338 PISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATY 1397

Query: 901  LAS 909
            L +
Sbjct: 1398 LCA 1400



 Score = 66.2 bits (160), Expect(2) = 2e-88
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G    C NP+ + R+KH+ +DYHF+R +V S AL V  VS++DQ  D LTKPL  + F  
Sbjct: 1394 GATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQN 1453

Query: 1068 LRSQLGL 1088
              S++G+
Sbjct: 1454 FASKIGV 1460


>dbj|BAK41511.1| polyprotein [Arabidopsis thaliana]
          Length = 1466

 Score =  288 bits (738), Expect(2) = 2e-88
 Identities = 151/303 (49%), Positives = 199/303 (65%)
 Frame = +1

Query: 1    KLQKSLYGLKQSPRAWFAK*RDSLVTMGFTPSKSDSSLFIHRYGPHAVFILVYIDDFLVF 180
            KL+K+LYGLKQ+PRAW+ + R+ L+T+GF  S SD+SLF+ + G   V++LVY+DD L+ 
Sbjct: 1098 KLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILIT 1157

Query: 181  STTPELSTCFVNTLSSQFPVKDLSPINYVLGIEAYRSPAGIFLSQSKYIKDLLERTNMSN 360
               P L    ++ LS +F VKD   ++Y LGIEA R P G+ LSQ +YI DLL RTNM  
Sbjct: 1158 GNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMIT 1217

Query: 361  CKPINTPMATNFTSCTDESPHFPNAPQYRSIVGSLQYLAFTRPDMSFTVNRVCQFMHKPQ 540
             KP+ TPMA +            +  +YR IVGSLQYLAFTRPD+S+ VNR+ QFMH P 
Sbjct: 1218 AKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPT 1277

Query: 541  EKHWQAVKRILRYLNAIVDMSFKLSSRPGQHLSVFSVAEWGGDPLDRRSTSAYCIFLGSN 720
            E+H QA+KRILRYL    +    L       L  +S A+W GD  D  ST+ Y ++LG +
Sbjct: 1278 EEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHH 1337

Query: 721  LISW**NKQATVARSTTEAEYRALAHATCEALWIQSLLAELQIALPQPPTLWCDNMGATY 900
             ISW   KQ  V RS+TEAEYR++A+ + E  WI SLL EL I L +PP ++CDN+GATY
Sbjct: 1338 PISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGIRLTRPPVIYCDNVGATY 1397

Query: 901  LAS 909
            L +
Sbjct: 1398 LCA 1400



 Score = 66.2 bits (160), Expect(2) = 2e-88
 Identities = 30/67 (44%), Positives = 43/67 (64%)
 Frame = +3

Query: 888  GCHLSCVNPILYHRIKHLGLDYHFVRERVLSKALNVAFVSSNDQSVDMLTKPLPISRFVC 1067
            G    C NP+ + R+KH+ +DYHF+R +V S AL V  VS++DQ  D LTKPL  + F  
Sbjct: 1394 GATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQN 1453

Query: 1068 LRSQLGL 1088
              S++G+
Sbjct: 1454 FASKIGV 1460