BLASTX nr result
ID: Rheum21_contig00020039
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Rheum21_contig00020039
(467 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006362231.1| PREDICTED: non-structural maintenance of chr... 80 4e-13
ref|XP_004295144.1| PREDICTED: non-structural maintenance of chr... 80 4e-13
ref|XP_004249168.1| PREDICTED: non-structural maintenance of chr... 80 4e-13
ref|XP_006445927.1| hypothetical protein CICLE_v10015454mg [Citr... 79 8e-13
gb|EMJ06504.1| hypothetical protein PRUPE_ppa006782mg [Prunus pe... 78 1e-12
emb|CBI30028.3| unnamed protein product [Vitis vinifera] 78 1e-12
ref|XP_002279026.1| PREDICTED: non-structural maintenance of chr... 78 1e-12
gb|EOY32462.1| Non-structural maintenance of chromosome element ... 77 2e-12
gb|EOY32461.1| Nse4, component of Smc5/6 DNA repair complex, put... 77 2e-12
ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [A... 77 2e-12
ref|XP_002304893.1| hypothetical protein POPTR_0003s21830g [Popu... 75 7e-12
ref|XP_006373741.1| hypothetical protein POPTR_0016s04610g, part... 75 1e-11
ref|XP_002337215.1| predicted protein [Populus trichocarpa] 75 1e-11
ref|XP_002323286.2| hypothetical protein POPTR_0016s04710g [Popu... 74 2e-11
ref|XP_006393077.1| hypothetical protein EUTSA_v10011541mg [Eutr... 73 3e-11
gb|ESW14613.1| hypothetical protein PHAVU_007G003000g [Phaseolus... 73 4e-11
ref|XP_006838288.1| hypothetical protein AMTR_s00103p00104910 [A... 73 4e-11
gb|EEE56493.1| hypothetical protein OsJ_05737 [Oryza sativa Japo... 73 4e-11
gb|EEC72666.1| hypothetical protein OsI_06217 [Oryza sativa Indi... 73 4e-11
ref|XP_006307701.1| hypothetical protein CARUB_v10009330mg [Caps... 72 6e-11
>ref|XP_006362231.1| PREDICTED: non-structural maintenance of chromosomes element 4
homolog A-like [Solanum tuberosum]
Length = 400
Score = 79.7 bits (195), Expect = 4e-13
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLML SV G+ELMPHR D+ + +Q A+S +STTPIRK
Sbjct: 305 FVFRFDFQDWKLMLASVAVGDELMPHRNEA-DIPA--TSQPASSTVDKEQAVSTTPIRKL 361
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QEQ VE
Sbjct: 362 SRNRGLVLQEQTVVE 376
>ref|XP_004295144.1| PREDICTED: non-structural maintenance of chromosome element 4-like
[Fragaria vesca subsp. vesca]
Length = 384
Score = 79.7 bits (195), Expect = 4e-13
Identities = 43/78 (55%), Positives = 51/78 (65%), Gaps = 3/78 (3%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMS---TTPI 173
FVFRFDF+DWKLM D V +GEELMPHR P ++ A+ EP A TTPI
Sbjct: 293 FVFRFDFKDWKLMKDMVPDGEELMPHRVPP-------NSEPASQEEPAAYSSQTGHTTPI 345
Query: 174 RKRTRNRGLVIQEQAFVE 227
RK +RNRG V+QE+A VE
Sbjct: 346 RKLSRNRGRVVQEEAVVE 363
>ref|XP_004249168.1| PREDICTED: non-structural maintenance of chromosome element 4-like
[Solanum lycopersicum]
Length = 400
Score = 79.7 bits (195), Expect = 4e-13
Identities = 44/75 (58%), Positives = 53/75 (70%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLML SV G+ELMPHR D+ + +Q A+S +STTPIRK
Sbjct: 305 FVFRFDFQDWKLMLASVAVGDELMPHRNEA-DIPA--TSQPASSTVDKEQAVSTTPIRKL 361
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QEQ VE
Sbjct: 362 SRNRGLVLQEQTVVE 376
>ref|XP_006445927.1| hypothetical protein CICLE_v10015454mg [Citrus clementina]
gi|568879420|ref|XP_006492656.1| PREDICTED:
non-structural maintenance of chromosomes element 4
homolog A-like [Citrus sinensis]
gi|557548538|gb|ESR59167.1| hypothetical protein
CICLE_v10015454mg [Citrus clementina]
Length = 405
Score = 78.6 bits (192), Expect = 8e-13
Identities = 42/82 (51%), Positives = 52/82 (63%), Gaps = 7/82 (8%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQ-------PTIDVGSFNGTQNAASAEPGAGGMS 161
FVFR+DF+DWKLM D V GEELMPHR+ P + S+N T+ G
Sbjct: 311 FVFRYDFKDWKLMKDVVPAGEELMPHRESSNALPVPQAEQASYNNTE---------GASR 361
Query: 162 TTPIRKRTRNRGLVIQEQAFVE 227
TTPIRK +RNRGLVI+E++ VE
Sbjct: 362 TTPIRKLSRNRGLVIREESVVE 383
>gb|EMJ06504.1| hypothetical protein PRUPE_ppa006782mg [Prunus persica]
Length = 395
Score = 78.2 bits (191), Expect = 1e-12
Identities = 39/75 (52%), Positives = 49/75 (65%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM D + GEELMPHR P S +Q +A + TTPIRK
Sbjct: 303 FVFRFDFKDWKLMKDMLPVGEELMPHRSPP---NSLPASQEEPAAYSSQTALPTTPIRKL 359
Query: 183 TRNRGLVIQEQAFVE 227
+RNRG ++QE++ VE
Sbjct: 360 SRNRGRLVQEESVVE 374
>emb|CBI30028.3| unnamed protein product [Vitis vinifera]
Length = 452
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM SV GEELMP R ++++ + N ++ + E A TTPIRK
Sbjct: 355 FVFRFDFKDWKLMATSVGAGEELMPQRN-SVNLPN-NSQTDSVAEECEAAAAPTTPIRKL 412
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QEQA VE
Sbjct: 413 SRNRGLVLQEQAVVE 427
>ref|XP_002279026.1| PREDICTED: non-structural maintenance of chromosome element 4
[Vitis vinifera]
Length = 380
Score = 77.8 bits (190), Expect = 1e-12
Identities = 42/75 (56%), Positives = 53/75 (70%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM SV GEELMP R ++++ + N ++ + E A TTPIRK
Sbjct: 283 FVFRFDFKDWKLMATSVGAGEELMPQRN-SVNLPN-NSQTDSVAEECEAAAAPTTPIRKL 340
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QEQA VE
Sbjct: 341 SRNRGLVLQEQAVVE 355
>gb|EOY32462.1| Non-structural maintenance of chromosome element 4, putative
isoform 2 [Theobroma cacao]
Length = 424
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM+ V GEELMPHR+ + + S + ++A G ++TTPIRK
Sbjct: 333 FVFRFDFKDWKLMMSGVPVGEELMPHREESHSILS----KAESAANNSEGALTTTPIRKL 388
Query: 183 TRNRGLVIQE 212
+RNRGLV+QE
Sbjct: 389 SRNRGLVLQE 398
>gb|EOY32461.1| Nse4, component of Smc5/6 DNA repair complex, putative isoform 1
[Theobroma cacao]
Length = 391
Score = 77.4 bits (189), Expect = 2e-12
Identities = 38/70 (54%), Positives = 50/70 (71%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM+ V GEELMPHR+ + + S + ++A G ++TTPIRK
Sbjct: 300 FVFRFDFKDWKLMMSGVPVGEELMPHREESHSILS----KAESAANNSEGALTTTPIRKL 355
Query: 183 TRNRGLVIQE 212
+RNRGLV+QE
Sbjct: 356 SRNRGLVLQE 365
>ref|NP_175525.1| Nse4, component of Smc5/6 DNA repair complex [Arabidopsis thaliana]
gi|75169065|sp|Q9C689.1|NSE4A_ARATH RecName:
Full=Non-structural maintenance of chromosomes element 4
homolog A; Short=Non-SMC element 4 homolog A
gi|12320790|gb|AAG50545.1|AC079828_16 hypothetical
protein [Arabidopsis thaliana]
gi|28393397|gb|AAO42122.1| unknown protein [Arabidopsis
thaliana] gi|29824223|gb|AAP04072.1| unknown protein
[Arabidopsis thaliana] gi|332194504|gb|AEE32625.1| Nse4,
component of Smc5/6 DNA repair complex [Arabidopsis
thaliana]
Length = 403
Score = 77.0 bits (188), Expect = 2e-12
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFR DF+DWKLM + V GEELMPHRQ + S ASA+ TTPIRK
Sbjct: 309 FVFRLDFKDWKLMSEMVPLGEELMPHRQTAVASSSCPAASAPASAD-FTQDTQTTPIRKL 367
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 368 SRNRGLVVQEETVVE 382
>ref|XP_002304893.1| hypothetical protein POPTR_0003s21830g [Populus trichocarpa]
gi|222842325|gb|EEE79872.1| hypothetical protein
POPTR_0003s21830g [Populus trichocarpa]
Length = 393
Score = 75.5 bits (184), Expect = 7e-12
Identities = 41/74 (55%), Positives = 47/74 (63%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDFRDWKLM V +GEELMPHR+ S +Q A G S TPIRK
Sbjct: 300 FVFRFDFRDWKLMKGVVPDGEELMPHRE------SSGASQVEPDANNTEGTRSRTPIRKF 353
Query: 183 TRNRGLVIQEQAFV 224
+RNRGLV+QE + V
Sbjct: 354 SRNRGLVVQEDSVV 367
>ref|XP_006373741.1| hypothetical protein POPTR_0016s04610g, partial [Populus
trichocarpa] gi|550320826|gb|ERP51538.1| hypothetical
protein POPTR_0016s04610g, partial [Populus trichocarpa]
Length = 329
Score = 74.7 bits (182), Expect = 1e-11
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM+ +V+ GEELMP+R I++ S + + E AGG TTPIRK
Sbjct: 234 FVFRFDFKDWKLMISAVEVGEELMPNRN-QINMPS-DSVADPIPVETQAGG-PTTPIRKF 290
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 291 SRNRGLVLQEKTVVE 305
>ref|XP_002337215.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 74.7 bits (182), Expect = 1e-11
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM+ +V+ GEELMP+R I++ S + + E AGG TTPIRK
Sbjct: 20 FVFRFDFKDWKLMISAVEVGEELMPNRN-QINMPS-DSVADPIPVETQAGG-PTTPIRKF 76
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 77 SRNRGLVLQEKTVVE 91
>ref|XP_002323286.2| hypothetical protein POPTR_0016s04710g [Populus trichocarpa]
gi|550320838|gb|EEF05047.2| hypothetical protein
POPTR_0016s04710g [Populus trichocarpa]
Length = 382
Score = 74.3 bits (181), Expect = 2e-11
Identities = 42/75 (56%), Positives = 54/75 (72%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM+ +V+ GEELMP+R I++ S + + E AGG TTPIRK
Sbjct: 287 FVFRFDFKDWKLMISAVEVGEELMPNRN-QINMPS-DSLADPIPVETQAGG-PTTPIRKF 343
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 344 SRNRGLVLQEKTVVE 358
>ref|XP_006393077.1| hypothetical protein EUTSA_v10011541mg [Eutrema salsugineum]
gi|557089655|gb|ESQ30363.1| hypothetical protein
EUTSA_v10011541mg [Eutrema salsugineum]
Length = 402
Score = 73.2 bits (178), Expect = 3e-11
Identities = 40/76 (52%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPG-AGGMSTTPIRK 179
FVFR DF+DWKLM + V GEELMPHR+ I + + SA G TTPIRK
Sbjct: 314 FVFRLDFKDWKLMSEMVPMGEELMPHREIAI------ASSSCPSASAGFTQDSQTTPIRK 367
Query: 180 RTRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 368 LSRNRGLVVQEETVVE 383
>gb|ESW14613.1| hypothetical protein PHAVU_007G003000g [Phaseolus vulgaris]
Length = 370
Score = 72.8 bits (177), Expect = 4e-11
Identities = 36/75 (48%), Positives = 49/75 (65%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFR+D++DWKLM D+V EGE+LMPHR + Q + ++ TPIRK
Sbjct: 275 FVFRYDYQDWKLMKDAVPEGEDLMPHRDQCC---AGADPQERKGGDDSQLALALTPIRKL 331
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE++ VE
Sbjct: 332 SRNRGLVVQEESVVE 346
>ref|XP_006838288.1| hypothetical protein AMTR_s00103p00104910 [Amborella trichopoda]
gi|548840756|gb|ERN00857.1| hypothetical protein
AMTR_s00103p00104910 [Amborella trichopoda]
Length = 385
Score = 72.8 bits (177), Expect = 4e-11
Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 11/81 (13%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHR-----------QPTIDVGSFNGTQNAASAEPGA 149
FVFRFDF+DWK+M+D+V GEE MP+R PT+ G+ G AS + A
Sbjct: 282 FVFRFDFKDWKMMIDTVPSGEEAMPYRNAAIHSGNTQVDPTVHFGNSQGNPAVASIDSQA 341
Query: 150 GGMSTTPIRKRTRNRGLVIQE 212
TTPIRK +RNRGLVI +
Sbjct: 342 A--PTTPIRKLSRNRGLVIND 360
>gb|EEE56493.1| hypothetical protein OsJ_05737 [Oryza sativa Japonica Group]
Length = 360
Score = 72.8 bits (177), Expect = 4e-11
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM + V +GEELMPHR P + ++ A+P TPIRK
Sbjct: 268 FVFRFDFKDWKLMQEVVPDGEELMPHRNPE----NIPCAEDHDQADPPELCAQRTPIRKL 323
Query: 183 TRNRGLVIQEQAFV 224
TRNRGLV+Q+ V
Sbjct: 324 TRNRGLVMQQDQMV 337
>gb|EEC72666.1| hypothetical protein OsI_06217 [Oryza sativa Indica Group]
Length = 360
Score = 72.8 bits (177), Expect = 4e-11
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFRFDF+DWKLM + V +GEELMPHR P + ++ A+P TPIRK
Sbjct: 268 FVFRFDFKDWKLMQEVVPDGEELMPHRNPE----NIPCAEDHDQADPPELCAQRTPIRKL 323
Query: 183 TRNRGLVIQEQAFV 224
TRNRGLV+Q+ V
Sbjct: 324 TRNRGLVMQQDQMV 337
>ref|XP_006307701.1| hypothetical protein CARUB_v10009330mg [Capsella rubella]
gi|482576412|gb|EOA40599.1| hypothetical protein
CARUB_v10009330mg [Capsella rubella]
Length = 402
Score = 72.4 bits (176), Expect = 6e-11
Identities = 38/75 (50%), Positives = 47/75 (62%)
Frame = +3
Query: 3 FVFRFDFRDWKLMLDSVKEGEELMPHRQPTIDVGSFNGTQNAASAEPGAGGMSTTPIRKR 182
FVFR DF+DWKLM + V GEELMPHR+ + S A++ TTPIRK
Sbjct: 314 FVFRLDFKDWKLMSEVVPLGEELMPHRETAVASSS-----RRAASPDFTQDSQTTPIRKL 368
Query: 183 TRNRGLVIQEQAFVE 227
+RNRGLV+QE+ VE
Sbjct: 369 SRNRGLVVQEETVVE 383