BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Rheum21_contig00018590
         (1883 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicag...   292   4e-76
ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Popu...   287   1e-74
ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E sub...   280   2e-72
gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinac...   280   2e-72
ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V sub...   277   1e-71
gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus no...   276   2e-71
gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus...   275   5e-71
ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V sub...   274   1e-70
emb|CBI40152.3| unnamed protein product [Vitis vinifera]              270   2e-69
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   270   2e-69
ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citr...   265   4e-68
ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V sub...   265   7e-68
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   259   2e-66
gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis th...   259   2e-66
ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thalian...   259   2e-66
gb|AAB95289.1| unknown protein [Arabidopsis thaliana]                 259   2e-66
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   259   4e-66
ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|3555218...   258   6e-66
ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Caps...   255   5e-65
ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi...   253   3e-64

>ref|XP_003627838.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
            gi|355521860|gb|AET02314.1| DNA-directed RNA polymerase
            subunit [Medicago truncatula]
          Length = 2032

 Score =  292 bits (747), Expect = 4e-76
 Identities = 194/614 (31%), Positives = 297/614 (48%), Gaps = 26/614 (4%)
 Frame = +1

Query: 34   DEGASGWNQSGGWGSKKNLPET---------SSAWGSSKEISVPESCAAWGSTVDSRAPA 186
            D+  +  N   GWG  K+  +          SSAWG++      +S +AWG  V     +
Sbjct: 1420 DQPNTNSNDWSGWGPNKSDLQVDVIQEDSSKSSAWGAATNQKSDQSASAWGKAVVQEDSS 1479

Query: 187  SSEGWGAANESGK------STQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDA 348
             S  WG A           +  +  +D+ AS W ++V + DS  +  W  + S    D +
Sbjct: 1480 KSGAWGTATNQNSEQPSWGAATNQKSDQSASAWGKAVVQEDSSKSGAWGNAKSVVQEDSS 1539

Query: 349  -SGWGSKKNKAEASNTWGG-SKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAW 522
             SG  +  N +   + WG  +   E ++G   G +                T S    AW
Sbjct: 1540 KSGAPANTNHSSDQSCWGQITGGEERAQGESGGTK-----KWKADVSQEDSTNSGGWKAW 1594

Query: 523  GSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLK 702
            GS+K             V E + + ++++   ++  WK+G   S+KD+  +      K K
Sbjct: 1595 GSSKP-----------EVHEGESTKVQDS--WNSQKWKAGEDVSQKDSQKSSAWGATKPK 1641

Query: 703  HTDEGASDWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNW 882
              D  +S W  K     +  +    S+ W    E  P      W +       P  +S+W
Sbjct: 1642 SNDNRSS-WGQKKDEIHVMPEDSSRSNAW----EQKPENVKDSWVAK-----VPVANSSW 1691

Query: 883  NAADKSHEKSGWGSVHDAKSDLEKESSW-SAPSNKTNDGDSYGWGSSSNEKSAPRDSPGW 1059
              A KS E   W S ++  +   K +S  + P +  N+ DS  WG   +++S P     W
Sbjct: 1692 GKA-KSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDS-SWGKPKSQESQP-----W 1744

Query: 1060 DAKVSGTEAEASVEAQSQWGKPGAM-----GSSDQWQEAANSQGWGASNSDNSGEHETQS 1224
            D+K          E+ S WGKP +       S ++  + A S+GW +  +  + E +   
Sbjct: 1745 DSKN---------ESNSSWGKPKSQENHPWDSKNESNQTAGSRGWDSQVASANSESDKSF 1795

Query: 1225 PWGQTGGSTWKK---KGSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQRLD 1395
             WG+ G  ++KK   +GS +  G  +  DWK               +R+       QR +
Sbjct: 1796 QWGKQGRDSFKKNRFEGSQS--GGPNAGDWK---------------NRSRPVRPPGQRFE 1838

Query: 1396 LFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGG 1575
            L+T EEQDI+ ++EPI+ SIRRIMQ +GY DGDP++ EDQ Y+++ V  +HPDK+ K+G 
Sbjct: 1839 LYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKYVLENVFEHHPDKETKMGV 1898

Query: 1576 GMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRP 1755
            G+DH+MVSKH+NFQDSRC+YVV  DG+K+DFSYRKCLENLV+KKYP+  ESF  KY+R+P
Sbjct: 1899 GVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKYPETAESFCGKYFRKP 1958

Query: 1756 RNAGDQEQKPNNGG 1797
            +    ++Q PN  G
Sbjct: 1959 QPRVKRDQTPNPAG 1972



 Score = 64.3 bits (155), Expect = 2e-07
 Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 24/218 (11%)
 Frame = +1

Query: 727  WNSKSGGWDLKEKKVEA-SSTWGSSKELPPPTGSQGWGS----ANQGNTAPDGSSNW--N 885
            ++ ++G +D+  +      + +  + ELP  + S GW S     +Q NT  +  S W  N
Sbjct: 1376 FDDENGDFDMSPQHASGFDAVFDETFELPNGSTSNGWDSNKDQIDQPNTNSNDWSGWGPN 1435

Query: 886  AAD--------KSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNEKSAP 1041
             +D         S + S WG+  + KSD +  S+W     + +   S  WG+++N+ S  
Sbjct: 1436 KSDLQVDVIQEDSSKSSAWGAATNQKSD-QSASAWGKAVVQEDSSKSGAWGTATNQNS-- 1492

Query: 1042 RDSPGWDAKVSGTEAEASVEAQSQWG---------KPGAMGSSDQWQEAANSQGWGASNS 1194
             + P W A  +    + S ++ S WG         K GA G++    +  +S+    +N+
Sbjct: 1493 -EQPSWGAATN----QKSDQSASAWGKAVVQEDSSKSGAWGNAKSVVQEDSSKSGAPANT 1547

Query: 1195 DNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWK 1308
            ++S +   QS WGQ  G   + +G      S  T  WK
Sbjct: 1548 NHSSD---QSCWGQITGGEERAQGE-----SGGTKKWK 1577


>ref|XP_002303926.2| hypothetical protein POPTR_0003s19630g [Populus trichocarpa]
            gi|550343552|gb|EEE78905.2| hypothetical protein
            POPTR_0003s19630g [Populus trichocarpa]
          Length = 1920

 Score =  287 bits (735), Expect = 1e-74
 Identities = 197/612 (32%), Positives = 281/612 (45%), Gaps = 29/612 (4%)
 Frame = +1

Query: 34   DEGASGWNQSGG------WGSKKNLPETSS--AWGSSKEISVPESCAAWGSTVDSRAPAS 189
            D  +SGW+ +        W S+ N+ +++S   W + K    PE    + + V    P +
Sbjct: 1360 DVASSGWDTAAARTTNNSWNSENNVAQSNSFSGWATKK----PEPHNGFATKVQEE-PTT 1414

Query: 190  SEGWGAANESGKSTQDHTTDE--GASGWNQSVSKGDSDDASNWNQSVSKGDNDD---ASG 354
            S  W A    G+  +D+   E   +  W   V+ GD    S  N+S +K   D      G
Sbjct: 1415 SNDWDAGAAWGRKDRDNKFAETNASKSWWGKVTDGDE---SGQNKSKNKRPEDQDVGTHG 1471

Query: 355  WGSKKNKAEASNTWGGSKLPES---SEGWGS-GNEIXXXXXXXXXXXXXXXTTSKTSNAW 522
            W  K ++ ++ + W      E+   S GW S GN                    K ++ W
Sbjct: 1472 WDDKMSQDQSISGWASKTTQEATTESLGWDSKGNSNPGDAACGW----------KAASTW 1521

Query: 523  GSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLK 702
            G+          K WG    S+++   +   K  S   S  W S K++  +D        
Sbjct: 1522 GAENT----DGDKLWGKEVSSNQADTASGWGKPKSPEISLGWGSTKESVKSDR------- 1570

Query: 703  HTDEGASDWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNW 882
                    W   S G   ++KK E  S  G  KE      S GWG+    N A D +S W
Sbjct: 1571 -------GWGVSSSGGG-RDKKTENQSLAGQGKE------SGGWGNKVTSNQA-DTASGW 1615

Query: 883  NAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNEKSAPRDSPGWD 1062
                 S    GWG   ++  ++ +   W  P++   +G      + +          GWD
Sbjct: 1616 GKPKSSENSQGWGLSKESGKEVHE---WGVPNSAGGNGSETNNNNENQSLVEQGKESGWD 1672

Query: 1063 AKVSGTEAEASVEAQSQWGKPGAMGSSDQW----QEAANSQGWGASNSDNSGEHETQSPW 1230
             K S  +   +    S WGKP +   S+ W    +      GWG  NS           W
Sbjct: 1673 NKASSNQEGTA----SGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQW 1728

Query: 1231 GQTGGSTWKKK-GSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTA 1407
            GQ      K +   S  WGS++  DWK             D + + +FT TRQRLD+FT+
Sbjct: 1729 GQQSREFKKDRFEGSRGWGSNN-GDWKNKRNRPSKPH--EDLNASGIFTTTRQRLDVFTS 1785

Query: 1408 EEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDH 1587
            +EQDIL+++EP+MLSIRRIM Q GY DGDP+S +DQSY++D V  YHPDK  K+G G+DH
Sbjct: 1786 QEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKMGAGIDH 1845

Query: 1588 IMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYW------- 1746
            + VS+H+NFQ+SRC Y+VS DG KQDFSYRKCLEN +K KYPD  + F +KY+       
Sbjct: 1846 VTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFARRGNRQ 1905

Query: 1747 RRPRNAGDQEQK 1782
            R P   G +E+K
Sbjct: 1906 RTPAPEGTEEEK 1917



 Score = 68.2 bits (165), Expect = 1e-08
 Identities = 63/241 (26%), Positives = 93/241 (38%), Gaps = 16/241 (6%)
 Frame = +1

Query: 13   STQGHTADEGASGWNQSGGWGSKKNLPET-------SSAWGSSKEISVPESCAAWGSTVD 171
            ST+     +   G + SGG   KK   ++       S  WG+    +  ++ + WG    
Sbjct: 1561 STKESVKSDRGWGVSSSGGGRDKKTENQSLAGQGKESGGWGNKVTSNQADTASGWGKPKS 1620

Query: 172  SRAPASSEGWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDAS 351
            S    +S+GWG + ESGK   +      A         G+  + +N N++ S  +    S
Sbjct: 1621 SE---NSQGWGLSKESGKEVHEWGVPNSAG--------GNGSETNNNNENQSLVEQGKES 1669

Query: 352  GWGSK--KNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWG 525
            GW +K   N+   ++ WG  K P  SEGWGS  E                  S     WG
Sbjct: 1670 GWDNKASSNQEGTASGWGKPKSPALSEGWGSPREPVKAVHGWGVPNSGGGNGSGRDQQWG 1729

Query: 526  -SAKELPAP--VSSKTWGSVGESDKSFLENTPHKSASDWK-SGCWDS---RKDAPTTDEV 684
              ++E        S+ WGS    D     N P K   D   SG + +   R D  T+ E 
Sbjct: 1730 QQSREFKKDRFEGSRGWGS-NNGDWKNKRNRPSKPHEDLNASGIFTTTRQRLDVFTSQEQ 1788

Query: 685  D 687
            D
Sbjct: 1789 D 1789


>ref|XP_004511031.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cicer
            arietinum]
          Length = 2263

 Score =  280 bits (716), Expect = 2e-72
 Identities = 205/649 (31%), Positives = 305/649 (46%), Gaps = 50/649 (7%)
 Frame = +1

Query: 1    ESGKSTQGHTADEGASGWNQSGGWGSKKNLPETSSAWGSSK-------EISVPESCAA-- 153
            ESG S+Q   A       ++SG WG+  N      +WG +K       E +  ES ++  
Sbjct: 1607 ESG-SSQKWKAGVVQEDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGAEKAQWESGSSQK 1665

Query: 154  WGSTVDSRAPASSEGWGAANESGKSTQDHTTDEGASGWNQSVSKG--DSDDASNWNQSVS 327
            W + V     + S  WGA   + +++   +  +  SG      K   +S  +  W   V 
Sbjct: 1666 WKAGVVQEDSSKSGSWGA--NTNQNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVV 1723

Query: 328  KGDNDDASGWGSKKNKAEASNTWGGSK--LPESSEG--WGSGNEIXXXXXXXXXXXXXXX 495
            + D+  +  WG+  N+     +WG +K  + + +E   W SG+                 
Sbjct: 1724 QEDSSKSGSWGANTNQNSDQPSWGKNKSGIQDGAEKAQWESGSS-------QKWKAGVVQ 1776

Query: 496  TTSKTSNAWGSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTT 675
              S  S +WG+     +  SS  WG     ++   E +   S S  KSG W++       
Sbjct: 1777 EDSSKSGSWGANTNQNSDQSS--WGRNKSGEQDGAERSQWASGSSQKSGAWEANPSQKWN 1834

Query: 676  DEVDTFKLKHTDEGASDWNSKSGGWDL-KEKKVEASSTWGSSKELPPPTG-SQGWGSANQ 849
             ++       ++   S  NS  GGW      K E     G SK++   +  SQ W +   
Sbjct: 1835 ADLVQEDSSRSNNDESKTNS--GGWKAWGSSKTEVHE--GESKKVQEDSWKSQKWKAGAD 1890

Query: 850  GNTAPDGSSNWNAAD-----KSHEKSGWGS----VHDAKSDLEKESSWSAPSNKTNDG-- 996
                     +W A       KS++ S WG     +HD  S+  +E SWS+   K      
Sbjct: 1891 VTQDSPKMGSWGATKDATKPKSNDWSSWGKKKDEIHDGGSEKIQEDSWSSGKRKAESKSV 1950

Query: 997  ------DSYGWGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAM-----GSS 1143
                  DS    +  ++    +DS  WDAKV          A S WGKP +       S 
Sbjct: 1951 ADVMQEDSSKSNTWEHKSDDVKDS--WDAKVP--------VANSSWGKPKSQENQPWDSK 2000

Query: 1144 DQWQEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKK---KGS--STPWGSSDTSDWK 1308
            ++    A+S+GW +  +  + + +    WG+ G  ++KK   +GS  S  WGS+   DWK
Sbjct: 2001 NESNPTASSRGWDSQVASANSDSDKNFQWGKPGRESFKKNRFEGSQGSQGWGSN-AGDWK 2059

Query: 1309 XXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTD 1488
                           ++N        RLDL+++EEQDIL ++EPI+ SIRRIMQQ+GY D
Sbjct: 2060 ---------------NKNRPARPPGPRLDLYSSEEQDILKDIEPIVQSIRRIMQQQGYND 2104

Query: 1489 GDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDF 1668
            GDP++ EDQ Y+++ V  +HPDK+ K+G G+DH+MVS+H+NFQ+SRC YVV  DG+K+DF
Sbjct: 2105 GDPLAAEDQQYVLENVFEHHPDKETKMGVGIDHVMVSRHSNFQESRCFYVVLKDGKKEDF 2164

Query: 1669 SYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQ------EQKPNNGG 1797
            SYRKCLE+ V+KKY D  ESF  KY+R+PR   DQ      EQ  N GG
Sbjct: 2165 SYRKCLESFVRKKYADTAESFCGKYFRKPRPKRDQIANSGGEQTANPGG 2213



 Score = 90.5 bits (223), Expect = 2e-15
 Identities = 108/478 (22%), Positives = 180/478 (37%), Gaps = 71/478 (14%)
 Frame = +1

Query: 88   LPETSSAWGSSKEISVPESCAAWGSTVDSRAP----ASSEGWGAANESGKSTQDHTTDEG 255
            L + +  WG S     PE  + + +  D        ++S GW +  +  K     TT   
Sbjct: 1273 LDDDNMDWGMS-----PEHTSGFDAVFDESFELLNGSTSNGWDSNKDQNK-----TTTND 1322

Query: 256  ASGWNQSVSKGDSDDASN----------WNQSVSKGDNDDASGWGSKKNKAEASNTWGGS 405
             SGW Q+ S+   D A            W   ++K D+  +  W +  N+     +WGG+
Sbjct: 1323 WSGWGQNKSEIQVDVAETDQWGSGSTQKWKADITKEDSSKSGAWETGTNQNSDQPSWGGN 1382

Query: 406  KLPESSEG-----WGSGNEIXXXXXXXXXXXXXXXTTSKTSN-----AWGSAKE-LPAPV 552
            K     +G     W SG+                   + T+      +WG  K  +    
Sbjct: 1383 KTGVQDDGVVKTQWESGSSQKLKSDINKDSSKSGAWEASTNQNNDQPSWGRNKSGVQDDG 1442

Query: 553  SSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLKH--TDEGA-- 720
            + KT    G S K   +     S+   KSG W++  +   +D+    K K    D+GA  
Sbjct: 1443 AVKTQWESGSSQKWKTDVIQENSS---KSGAWEANTN-KNSDQPSWGKNKSGIQDDGAVK 1498

Query: 721  SDW----------------NSKSGGWDLKEKKVEASSTWGSSKELPPPTG---------- 822
            + W                +SKSG W+    K     +WG +K      G          
Sbjct: 1499 TQWESGSSQKWKTDVIQEDSSKSGAWEANTNKNSDPPSWGKNKSGIQDDGAVKTQWESGS 1558

Query: 823  SQGWGS-ANQGNTAPDGSSNWNA-ADKSHEKSGWGSVHDAKSDLEKESSWSAPSN----- 981
            SQ W +   Q +++  G+  W A  +K+ ++  WG       D  +++ W + S+     
Sbjct: 1559 SQKWKTDVIQEDSSKPGA--WEANTNKNSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKA 1616

Query: 982  ---KTNDGDSYGWGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAMGSSDQW 1152
               + +   S  WG+++N+ S   D P W    SG +  A    ++QW      GSS +W
Sbjct: 1617 GVVQEDSSKSGSWGANTNQNS---DQPSWGKNKSGIQDGAE---KAQW----ESGSSQKW 1666

Query: 1153 ------QEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWK 1308
                  ++++ S  WGA+ + NS     Q  WG+   S  +       W S  +  WK
Sbjct: 1667 KAGVVQEDSSKSGSWGANTNQNS----DQPSWGK-NKSGIQDGAEKAQWESGSSQKWK 1719



 Score = 88.2 bits (217), Expect = 1e-14
 Identities = 101/459 (22%), Positives = 166/459 (36%), Gaps = 27/459 (5%)
 Frame = +1

Query: 13   STQGHTADEGASGWNQSGGWGSKKNLPETSSAWGSSKEISVPESC--AAWGSTVDSRAPA 186
            STQ   AD      ++SG W +  N      +WG +K     +      W S    +  +
Sbjct: 1347 STQKWKADITKEDSSKSGAWETGTNQNSDQPSWGGNKTGVQDDGVVKTQWESGSSQKLKS 1406

Query: 187  SSEGWGAANESGKSTQDHTTDEGASGWNQSVSKGD--------SDDASNWNQSVSKGDND 342
                  + + + +++ +   D+ + G N+S  + D        S  +  W   V + ++ 
Sbjct: 1407 DINKDSSKSGAWEASTNQNNDQPSWGRNKSGVQDDGAVKTQWESGSSQKWKTDVIQENSS 1466

Query: 343  DASGWGSKKNKAEASNTWGGSKLPESSEG-----WGSGNEIXXXXXXXXXXXXXXXTTSK 507
             +  W +  NK     +WG +K     +G     W SG+                   S 
Sbjct: 1467 KSGAWEANTNKNSDQPSWGKNKSGIQDDGAVKTQWESGSS-------QKWKTDVIQEDSS 1519

Query: 508  TSNAW--GSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDE 681
             S AW   + K    P   K    + + D +        S+  WK+         P   E
Sbjct: 1520 KSGAWEANTNKNSDPPSWGKNKSGI-QDDGAVKTQWESGSSQKWKTDVIQEDSSKPGAWE 1578

Query: 682  VDTFKLKHTDEGASDWNSKSGGWDLKEK---KVEASSTWGSSKELPPPTGSQGWG-SANQ 849
             +T K     +  S   +KSG  D  EK   +  +S  W +       + S  WG + NQ
Sbjct: 1579 ANTNK---NSDQPSWGKNKSGIQDGAEKAQWESGSSQKWKAGVVQEDSSKSGSWGANTNQ 1635

Query: 850  GNTAPDGSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNE 1029
             +  P    N +      EK+ W S    K        W A   + +   S  WG+++N+
Sbjct: 1636 NSDQPSWGKNKSGIQDGAEKAQWESGSSQK--------WKAGVVQEDSSKSGSWGANTNQ 1687

Query: 1030 KSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAMGSSDQW------QEAANSQGWGASN 1191
             S   D P W    SG +  A    ++QW      GSS +W      ++++ S  WGA+ 
Sbjct: 1688 NS---DQPSWGKNKSGIQDGAE---KAQW----ESGSSQKWKAGVVQEDSSKSGSWGANT 1737

Query: 1192 SDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWK 1308
            + NS     Q  WG+   S  +       W S  +  WK
Sbjct: 1738 NQNS----DQPSWGK-NKSGIQDGAEKAQWESGSSQKWK 1771


>gb|AAX12374.1| DNA-directed RNA polymerase alpha subunit [Spinacia oleracea]
          Length = 1902

 Score =  280 bits (716), Expect = 2e-72
 Identities = 208/636 (32%), Positives = 287/636 (45%), Gaps = 55/636 (8%)
 Frame = +1

Query: 43   ASGWNQSGG---WGSKKNL--PETSSA---WGSSKEISVPESCAAWGSTVDSRAPASSEG 198
            ASG  + GG   WG KK+L  PE S+    WG+SK  S  E  +AWG          + G
Sbjct: 1285 ASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGASKSKS-KEPSSAWGKPAQE---TDNIG 1340

Query: 199  WGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDD-------ASGW 357
            W   N      +D    EG SGWN  + K ++   S  +Q  S  D D        ++G+
Sbjct: 1341 WKKNNPQ----RDSENLEGTSGWNDKLQK-ENKSFSKQSQPASSKDWDSTGNITAGSTGF 1395

Query: 358  GSKKNKAEASNTWGGSKLPESSEGWGSGN---EIXXXXXXXXXXXXXXXTTSKTSNAWGS 528
            G +K   +  +      + +S+ G   GN   +                 + K+S++W S
Sbjct: 1396 GVEKGNEKPWDVASNVSVKKSTWGQTGGNSWKKNEQDEKDGDPQGLPWGKSHKSSDSWTS 1455

Query: 529  AKELPAPVSS---------KTWGSVGESD-KSFLENTPHKSASDWKSG-CWDSRKDAPTT 675
             +    PVS           +WG   +S  K+  EN    + +   +G  WDS+K     
Sbjct: 1456 GQGNQHPVSQGVSEKQGTLSSWGQPRDSSQKNNNENGVSSNFNRQGAGKSWDSKKKESNV 1515

Query: 676  DEVDTFKLKHTDEGASDW--------------NSKSGGWDLKEKKVEA-SSTWGSSKELP 810
                        +G S W              ++ SGGW   +  V+  SS+WGS KE  
Sbjct: 1516 QS------SWAQQGDSTWKDSKEARSSVKANNSTNSGGWSTGKALVDGVSSSWGSQKEDR 1569

Query: 811  PPTGSQGWGSANQGNTAPDGSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTN 990
            P   S         N    G  N+   DK  ++ G  S    K + + +SSW  PS   N
Sbjct: 1570 PQPKS---------NDRSVGDGNF---DKDAKEEGLSSWDAKKVERKTQSSWGQPSESKN 1617

Query: 991  DGDSYGWGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAMGSSDQWQEAANS 1170
               S      S++ + P  S GW ++   T A    E Q  WGK             +N 
Sbjct: 1618 SAQSSADHWGSDKSNQPGKSSGWGSE--DTNAGKDSEKQDSWGK-------------SNV 1662

Query: 1171 QGWGASNSDN-SGEHETQSPWGQTGGSTWKKKG--SSTPWGSSDTSDWKXXXXXXXXXXX 1341
              W   + +   G  ++QSPWGQ GGS W KK       WGSS+T +WK           
Sbjct: 1663 STWKKESGEKLHGSDDSQSPWGQPGGSGWNKKQPEGGRGWGSSNTGEWKSRKNQNQNQNQ 1722

Query: 1342 X--------SDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDP 1497
                     +D S     T TR+R+D F  EE+D+L+EVE +M SIRRIM Q G  DG+P
Sbjct: 1723 NQNRPPRGPNDDSPRVALTATRKRMDEFPTEEKDVLSEVESLMQSIRRIMHQSGCVDGEP 1782

Query: 1498 ISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYR 1677
            +  +DQ+Y++D +L YHPDK AK+G G+D I V KH+NFQ+SRC YVVS DG+  DFSY 
Sbjct: 1783 LLPDDQTYLIDNILNYHPDKAAKIGAGVDFITVKKHSNFQESRCFYVVSTDGKDTDFSYI 1842

Query: 1678 KCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQKP 1785
            KC+E  VK KYP   ESF SKY+RR +        P
Sbjct: 1843 KCIETFVKGKYPSVAESFTSKYFRRSQRPQPASPSP 1878



 Score =  101 bits (252), Expect = 1e-18
 Identities = 122/458 (26%), Positives = 159/458 (34%), Gaps = 49/458 (10%)
 Frame = +1

Query: 31   ADEGASGWNQSGGWGSKKNLPETSSAWGSSKEISVPESCAAWGSTVDSRAPASSEGWGAA 210
            ADE +     S G G   N  +T S        S     ++WGS  D   P  S   G  
Sbjct: 1108 ADESSWDAFPSSGTGWNANKIDTGSG-------SAEGGWSSWGSKKDQANPEDSSKTGGW 1160

Query: 211  NESGKSTQDHTTDEGASG-WNQSVSKGDS---DDASNWNQSVSKGDND------------ 342
            +  G   +    D   SG W+ S S G S   D +  W Q V K  ND            
Sbjct: 1161 SSGGSKQKPQPEDSSKSGGWDASKSWGGSNQGDPSPVWGQPV-KATNDISIENDHGSGSA 1219

Query: 343  DASGW---GSKKNKA-----------EASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXX 480
            +  GW   G KK+ +           +AS +W GSK  + S  WG+G +           
Sbjct: 1220 EGGGWANSGMKKDLSKQENSSTAGGWDASKSWSGSKPKDPSSAWGAGKKTDDNNGWKKSD 1279

Query: 481  XXXXXTTSKTS----NAWGSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCW 648
                  +        + WG  K+L  P  S      G S          KS S   S  W
Sbjct: 1280 SKKDLASGSVEDGGCSGWGPKKDLLQPEDSAGENGWGAS----------KSKSKEPSSAW 1329

Query: 649  DSRKDAPTTDEVDTFKL-----KHTDEGASDWN---SKSGGWDLKEKKVEASSTWGSSKE 804
               K A  TD +   K          EG S WN    K      K+ +  +S  W S+  
Sbjct: 1330 G--KPAQETDNIGWKKNNPQRDSENLEGTSGWNDKLQKENKSFSKQSQPASSKDWDSTGN 1387

Query: 805  LPPPTGSQGWGSANQGNTAPDGSSNWN-AADKSHEKSGWGSVHDAKSDLEKESSWSAPSN 981
            +    GS G+G   +GN  P     W+ A++ S +KS WG            +SW     
Sbjct: 1388 I--TAGSTGFG-VEKGNEKP-----WDVASNVSVKKSTWGQTGG--------NSWKKNEQ 1431

Query: 982  KTNDGDSYG--WGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAMGSSDQWQ 1155
               DGD  G  WG S     +     G    VS   +E      S WG+P      +  +
Sbjct: 1432 DEKDGDPQGLPWGKSHKSSDSWTSGQGNQHPVSQGVSEKQ-GTLSSWGQPRDSSQKNNNE 1490

Query: 1156 EAA----NSQGWGASNSDNSGEHETQSPWGQTGGSTWK 1257
                   N QG G S      E   QS W Q G STWK
Sbjct: 1491 NGVSSNFNRQGAGKSWDSKKKESNVQSSWAQQGDSTWK 1528


>ref|XP_006598109.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2082

 Score =  277 bits (708), Expect = 1e-71
 Identities = 203/666 (30%), Positives = 302/666 (45%), Gaps = 83/666 (12%)
 Frame = +1

Query: 37   EGASGWNQSGGWGSKKNLPETS--SAWGSSKEI----SVPESCAAWGSTVDSRAPASS-- 192
            +G S   Q   WG   N  ++S  +AW +S  +    +     +AWGS   S  PA    
Sbjct: 1404 DGRSETAQENSWGKTVNQEDSSKSNAWNTSTTVDHANTKSNEWSAWGSN-QSEIPAGGSK 1462

Query: 193  ----EGWGAANESGKSTQDHTTDEGA--------------SGWNQS--VSKGDSDDASNW 312
                + WG++       Q+  +  GA              SGW +   V++ D+     W
Sbjct: 1463 AVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDNSRLGAW 1522

Query: 313  NQSVS-KGDNDDASGWGSKKNKAEASNT----WGGSKLPE--SSE--GWGSGNEIXXXXX 465
            + + + +  + D SGWG KK+  +  N+    W  +   +  SSE  GWG   ++     
Sbjct: 1523 DANAADQTKSRDWSGWGKKKDITQEDNSRLGAWDANAADQTKSSEWSGWGKKKDVTQEDN 1582

Query: 466  XXXXXXXXXXTTSKTSN---AWGSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDW- 633
                           SN    WG  KE+    +S+    +G  D +  + T     S W 
Sbjct: 1583 SRLGAWDANTADQTKSNEWSGWGKKKEVTQEDNSR----LGAWDANTADQTKSNEWSGWG 1638

Query: 634  -----------KSGCWDSRKDAPTTD-------------EVDTFKLKHTDEGASDWNSKS 741
                       + G WD+  +  T               + D  +L   D  A+D  +KS
Sbjct: 1639 KKKEVTQEDNSRFGAWDANAEDQTKSNEWSGWGKKKDVTQEDNSRLGAWDANAAD-QTKS 1697

Query: 742  GGWDLKEKKVEASS------TWGSSKELPPPT-----GSQGWGSANQGNTAPDGSSNWNA 888
              W    KK E +       +WGS K     T     GS GWG AN+ + A   SS W++
Sbjct: 1698 NEWSDWGKKKEVTQEDNVQDSWGSGKRKDKVTQEDNSGSGGWG-ANRTDLAKSKSSEWSS 1756

Query: 889  ADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNEK-SAPRDSPGWDA 1065
              K+  +   G   + ++D          + K N G +  W  +  E      + P  DA
Sbjct: 1757 WGKNKSEIPAGGSENVQNDSWGSGKLEDDTQKENSGSA--WVRNKAETIDGGSEKPQEDA 1814

Query: 1066 KVSGTEAEASVEAQSQWGKPG-----AMGSSDQWQEAANSQGWGASNSDNSGEHETQSPW 1230
              SG     S    + WGKP      A  S +Q  + ++SQGW +  +  + E E    W
Sbjct: 1815 WNSGNWKAESKVGNASWGKPKSSESQAWDSHNQSNQNSSSQGWESHIASANSESEKGFQW 1874

Query: 1231 GQTGGSTWKKKGSSTPWG-SSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTA 1407
            G+ G  ++KK       G  S+  DWK               +RN       QRLD++++
Sbjct: 1875 GKQGRDSFKKNRFEGSQGRGSNAGDWK---------------NRNRPPRAPGQRLDIYSS 1919

Query: 1408 EEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDH 1587
             EQD+L ++EPIM SIRRIMQQ+GY DGDP++ EDQ ++++ V  +HPDK+ K+G G+D+
Sbjct: 1920 GEQDVLKDIEPIMQSIRRIMQQQGYNDGDPLAAEDQLFVLENVFEHHPDKETKMGTGIDY 1979

Query: 1588 IMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAG 1767
            +MV+KH++FQ+SRC YVV  DG+ +DFSYRKCL N + KKYPD  ESF  KY+R+PR  G
Sbjct: 1980 VMVNKHSSFQESRCFYVVCKDGESKDFSYRKCLANYISKKYPDLAESFLGKYFRKPRARG 2039

Query: 1768 DQEQKP 1785
            DQ   P
Sbjct: 2040 DQTATP 2045


>gb|EXB62675.1| DNA-directed RNA polymerase E subunit 1 [Morus notabilis]
          Length = 2054

 Score =  276 bits (707), Expect = 2e-71
 Identities = 206/651 (31%), Positives = 306/651 (47%), Gaps = 80/651 (12%)
 Frame = +1

Query: 67   GWGSKKNLPETSSAWGSSKEISVPESCAAWGSTVDSRAPASSEGWGAAN-ESGKSTQDHT 243
            G   +++ P +S    SSK   V ++   WG+   S   +SS GW + N  SG       
Sbjct: 1392 GDADERHNPFSSKPQESSKRSDVWDATPGWGTNTASEKVSSSTGWNSENISSGAGWSKAD 1451

Query: 244  TDEG-ASGWN-QSVSKG--------DSDDASNW-NQSVSKG--------DNDDASGWGSK 366
            +D   A GWN +++S G        D+  A  W ++++S G        DN  A GW S+
Sbjct: 1452 SDNSHAKGWNSENISSGAGWSKAGSDNSHAKGWKSENISSGAGWSKADSDNSHAKGWNSE 1511

Query: 367  KNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPA 546
               + A  +  GS     ++GW S N                   S  S+A G   E   
Sbjct: 1512 NISSGAGWSKAGSDNSSHAKGWNSEN--------ISSGAGWSKADSDNSHAKGWNSE--- 1560

Query: 547  PVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLKHTDEGASD 726
             +SS    S   SD S  +    ++ S   SG   S+  +  +     +  ++   GA  
Sbjct: 1561 NISSGAGWSKAGSDNSHAKGWNSENIS---SGAGWSKAGSDNSSHAKGWNSENISSGAG- 1616

Query: 727  W------NSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQGWGSAN----------QGNT 858
            W      NS + GW+ +      SS  G SK     + ++GW S N            + 
Sbjct: 1617 WSKEDSDNSHAKGWNSE----NISSGAGWSKAGSDNSHAKGWNSENISSGARWSKADSDN 1672

Query: 859  APDGSSNWNAAD---KSHEKSGWGSVHDAKS------------DLEKESSWSAPSNKTND 993
                S++WN      K+  K+ W   H  KS            DL + S W A SN+ N+
Sbjct: 1673 THAKSTDWNTTSDRTKTMTKNTWSGWHGEKSEKEDILSTKSQQDLPRNSDWGAVSNRENN 1732

Query: 994  GD-SYGWGSSS----NEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAMGSSDQ--- 1149
             + +Y + S      ++ S P D   WD K++  +A +   + +  G      SS++   
Sbjct: 1733 AERAYEFVSKDQPLPDQVSEPCD---WDNKLTPQKAVSGWLSSNDEGWTKDANSSERKEP 1789

Query: 1150 ---------WQ-----------EAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGS 1269
                     W+           E+A+   W    + + GE E  + W +  GS  K  G 
Sbjct: 1790 TDSPVVYNSWEKRTSSEISQNVESASFNSW-LPRAGDGGEVEKPNEWVKKSGSFKKNHGE 1848

Query: 1270 STPWGSSDTSDWK-XXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIM 1446
            ++    SD+ DWK             +D +   +FT TRQRLDLFT+EEQD L+ +EP M
Sbjct: 1849 TSGGWGSDSGDWKIKKNHPGKFPRMNNDNTSVRLFTETRQRLDLFTSEEQDALSLIEPTM 1908

Query: 1447 LSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSR 1626
             SIRRIM + GY DGDPI  EDQS+I+D V  YHPDK AK+G G+DH+M+S+H++FQDSR
Sbjct: 1909 KSIRRIMHKSGYNDGDPIRPEDQSFIIDNVFNYHPDKAAKMGSGIDHLMISRHSSFQDSR 1968

Query: 1627 CMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQ 1779
            C+YVVS DG+K+DFSYRKCL NL+K ++PD  + F  KY+R+P+  G+Q++
Sbjct: 1969 CLYVVSTDGRKEDFSYRKCLGNLIKSRFPDVADEFLDKYFRKPKPGGNQDR 2019


>gb|ESW05756.1| hypothetical protein PHAVU_011G206900g [Phaseolus vulgaris]
          Length = 2052

 Score =  275 bits (703), Expect = 5e-71
 Identities = 214/699 (30%), Positives = 322/699 (46%), Gaps = 108/699 (15%)
 Frame = +1

Query: 13   STQGHTADEGASGWNQSGGWGSKKN------LPETSSAWGSSKEISVPES----CAAWGS 162
            +T GHT  +     N+   WGSKK+        +   +WGS K   V +       AWG+
Sbjct: 1363 NTTGHTNTKS----NEWSAWGSKKSEIQAGGSEKVEGSWGSGKTKDVTQKDNFGSGAWGA 1418

Query: 163  TVDSRAPASSEGWGAANESGKST----QDHTTDEGASGWNQSVSKGDSDDASNWNQSV-- 324
                +A   S  W +   +         ++  D   SG  + V++  +  +  W  +V  
Sbjct: 1419 NKTDQAKTKSNEWSSWGNNNSEILAGGSENMQDSWGSGGRKDVTQEGNVTSGAWGANVDQ 1478

Query: 325  SKGDNDDASGWGSKKNKAEASNT------WGGSK-------LPESSEGWGSGNEIXXXXX 465
            +K  +++ SGWG  K++  A  +      WG  K       +  S+ GWG          
Sbjct: 1479 TKTQSNEWSGWGKNKSEIPAGGSENVQGSWGSDKWKDGVTQVDNSASGWGGNRR------ 1532

Query: 466  XXXXXXXXXXTTSKTSNAW---GSAK-ELPAPVSSK----TWGS------VGESDKSFL- 600
                       T   SN W   GS K E+PA  S      +WGS      V E D S   
Sbjct: 1533 ---------DQTKAKSNEWSGRGSNKAEIPAGASENVQEDSWGSGKLGDDVTEKDNSGSG 1583

Query: 601  -------ENTPHKSASDWKSGCWDSRKDAPT-------TDEVDTFKLK-----HTDEGAS 723
                   + T  KS ++W SG   ++ + P         D   + KLK     + + G+ 
Sbjct: 1584 AWGGNRRDQTKTKS-NEW-SGWGRNKLEIPAGGSENVQEDSWGSGKLKDDVTQNDNSGSD 1641

Query: 724  DWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQG----WGSAN-----QGNTAPDGSS 876
             W + S G   K K  E S   G +K   P  GS+     WGS       Q +T+  GS 
Sbjct: 1642 AWGANSTG-QTKSKSNEWSGR-GKNKSEIPAGGSENVQDSWGSGTRKDVTQVDTSVSGSW 1699

Query: 877  NWNAADK----SHEKSGWG----SVHDAKSDLEKESSWSAP------SNKTNDGDSYGWG 1014
              +  D+    S+E +GWG     +     +  +E SW +       + K N G S  WG
Sbjct: 1700 GGSRKDQTNTTSNEWAGWGRNKSEIPAGGCETVQEDSWGSGKLKDDVTQKDNSG-SGAWG 1758

Query: 1015 SSSN----------EKSAPRDSPGWDAKV------SGTEAEASVEAQSQWGKPGAMGSS- 1143
            ++             ++    + G   K+      SG     S    + WGKP + GS  
Sbjct: 1759 ANKTGLTKTEVDEWARNKVETADGGSEKLQEDSWNSGNLKSESKVGNASWGKPNSSGSQS 1818

Query: 1144 ----DQWQEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWG-SSDTSDWK 1308
                +Q  + ++S+GW +  +  + + E    WG+ G  ++KK       G  S++ DWK
Sbjct: 1819 WDSHNQSNQNSSSRGWESHIASANSDSEKGFQWGKQGRESFKKNRFEGSQGRGSNSGDWK 1878

Query: 1309 XXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTD 1488
                           +RN       QRLDL+++EEQD+L E+EPIM SIRRIMQQ+GY D
Sbjct: 1879 ---------------NRNRPPRTPGQRLDLYSSEEQDVLKEIEPIMQSIRRIMQQQGYND 1923

Query: 1489 GDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDF 1668
            GDP++ +DQ ++++ V  +HPDKD K+G G+D++MV+KH++FQDSRC YVV  DG+++DF
Sbjct: 1924 GDPLAADDQLFVLENVFEHHPDKDTKMGAGIDYVMVNKHSSFQDSRCFYVVLKDGRREDF 1983

Query: 1669 SYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQKP 1785
            SYRKCL+N ++KKYP+  ESFF KY+R+PRN  +Q   P
Sbjct: 1984 SYRKCLDNWIRKKYPELAESFFGKYFRKPRNRAEQTATP 2022



 Score = 94.7 bits (234), Expect = 1e-16
 Identities = 114/412 (27%), Positives = 165/412 (40%), Gaps = 38/412 (9%)
 Frame = +1

Query: 172  SRAPASSEGWGAANESGKSTQDHTTDEGA-SGWNQSVSKGDSDDASNWNQSVSKGDN--- 339
            S+  + + GW     +   T +  +D    S W ++V++ DS  +S WN + +   N   
Sbjct: 1313 SQTESKTNGWSGWVSNKAETNEGRSDRAQESSWGKTVTQEDSSKSSAWNTNTTGHTNTKS 1372

Query: 340  DDASGWGSKKNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKT--- 510
            ++ S WGSKK++ +A    GGS+  E S  WGSG                   T K    
Sbjct: 1373 NEWSAWGSKKSEIQA----GGSEKVEGS--WGSGK--------------TKDVTQKDNFG 1412

Query: 511  SNAWGSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDT 690
            S AWG+ K   A   S  W S G ++   L          W SG    RKD         
Sbjct: 1413 SGAWGANKTDQAKTKSNEWSSWGNNNSEILAGGSENMQDSWGSG---GRKDV-------- 1461

Query: 691  FKLKHTDEGASDWNSKSGGW--DLKEKKVEAS--STWGSSKELPPPTGSQ----GWGSA- 843
                 T EG    N  SG W  ++ + K +++  S WG +K   P  GS+     WGS  
Sbjct: 1462 -----TQEG----NVTSGAWGANVDQTKTQSNEWSGWGKNKSEIPAGGSENVQGSWGSDK 1512

Query: 844  -NQGNTAPDGS-SNW--NAAD----KSHEKSGWGS----VHDAKSDLEKESSWSA----- 972
               G T  D S S W  N  D    KS+E SG GS    +    S+  +E SW +     
Sbjct: 1513 WKDGVTQVDNSASGWGGNRRDQTKAKSNEWSGRGSNKAEIPAGASENVQEDSWGSGKLGD 1572

Query: 973  -PSNKTNDGDSYGWGSSSNE--KSAPRDSPGWDAKVSGTEAEASVEAQ-SQWGKPGAMGS 1140
              + K N G S  WG +  +  K+   +  GW        A  S   Q   WG  G +  
Sbjct: 1573 DVTEKDNSG-SGAWGGNRRDQTKTKSNEWSGWGRNKLEIPAGGSENVQEDSWGS-GKLKD 1630

Query: 1141 SDQWQEAANSQGWGASNSDNSGEHETQS-PWGQTGGSTWKKKGSSTPWGSSD 1293
                 + + S  WGA   +++G+ +++S  W   G     K  S  P G S+
Sbjct: 1631 DVTQNDNSGSDAWGA---NSTGQTKSKSNEWSGRG-----KNKSEIPAGGSE 1674



 Score = 84.7 bits (208), Expect = 1e-13
 Identities = 110/485 (22%), Positives = 165/485 (34%), Gaps = 57/485 (11%)
 Frame = +1

Query: 13   STQGHTADEGASGW-NQSGGWGSKKNLPETSSAWGSSKEISVPESCAAWGSTVDSRAPAS 189
            S+Q  +   G SGW +        ++     S+WG +         +AW +         
Sbjct: 1312 SSQTESKTNGWSGWVSNKAETNEGRSDRAQESSWGKTVTQEDSSKSSAWNTNTTGHTNTK 1371

Query: 190  SEGWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSK- 366
            S  W A        Q   +++    W    +K            V++ DN  +  WG+  
Sbjct: 1372 SNEWSAWGSKKSEIQAGGSEKVEGSWGSGKTK-----------DVTQKDNFGSGAWGANK 1420

Query: 367  ----KNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAK 534
                K K+   ++WG +    +SE    G+E                  + TS AWG+  
Sbjct: 1421 TDQAKTKSNEWSSWGNN----NSEILAGGSENMQDSWGSGGRKDVTQEGNVTSGAWGANV 1476

Query: 535  ELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLKHTDE 714
            +      S  W   G++               W S  W   KD  T            D 
Sbjct: 1477 D-QTKTQSNEWSGWGKNKSEIPAGGSENVQGSWGSDKW---KDGVT----------QVDN 1522

Query: 715  GASDWNSKSGGWDLKEKKVEASSTW---GSSKELPPPTGSQ-----GWGSANQGNTAPD- 867
             AS W     G + +++    S+ W   GS+K   P   S+      WGS   G+   + 
Sbjct: 1523 SASGW-----GGNRRDQTKAKSNEWSGRGSNKAEIPAGASENVQEDSWGSGKLGDDVTEK 1577

Query: 868  ---GSSNW--NAAD----KSHEKSGWG----SVHDAKSDLEKESSWSA-------PSNKT 987
               GS  W  N  D    KS+E SGWG     +    S+  +E SW +         N  
Sbjct: 1578 DNSGSGAWGGNRRDQTKTKSNEWSGWGRNKLEIPAGGSENVQEDSWGSGKLKDDVTQNDN 1637

Query: 988  NDGDSYGWGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGK-------------PG 1128
            +  D++G  S+   KS   +  G     S   A  S   Q  WG               G
Sbjct: 1638 SGSDAWGANSTGQTKSKSNEWSGRGKNKSEIPAGGSENVQDSWGSGTRKDVTQVDTSVSG 1697

Query: 1129 AMGSS--DQWQEAANS-QGWGASNSD-NSGEHET--QSPWGQ---TGGSTWKKKGSSTPW 1281
            + G S  DQ    +N   GWG + S+  +G  ET  +  WG        T K    S  W
Sbjct: 1698 SWGGSRKDQTNTTSNEWAGWGRNKSEIPAGGCETVQEDSWGSGKLKDDVTQKDNSGSGAW 1757

Query: 1282 GSSDT 1296
            G++ T
Sbjct: 1758 GANKT 1762


>ref|XP_003541591.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Glycine max]
          Length = 2020

 Score =  274 bits (700), Expect = 1e-70
 Identities = 199/634 (31%), Positives = 287/634 (45%), Gaps = 57/634 (8%)
 Frame = +1

Query: 43   ASGWNQSGGWGSKKNLPETSSAWGSSKEISVPESCAAWGSTVDSRAPASSEGWGAANESG 222
            ++ WN S      K   +  SAWGS+K   +P    A GS       + S  W   N S 
Sbjct: 1401 SNAWNTSTTSNQTKTKSKEWSAWGSNKS-EIP----ACGSKAVQEDSSKSNTW---NTST 1452

Query: 223  KSTQDHTTDEGASGWNQSVSK----------GDSDDASNWNQSVS----KGDNDDASGWG 360
             + Q  T     S W  + S+           DS  ++ WN+S +    K  +++ S WG
Sbjct: 1453 TADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNRSTTADQTKTKSNEWSAWG 1512

Query: 361  SKKNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAK-E 537
            S K++  A  +    +    S  W +                   T S   +AWGS K E
Sbjct: 1513 SNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTK-----------TKSNEWSAWGSNKSE 1561

Query: 538  LPA-------PVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFK 696
            +PA         SSK W +   +D++  ++    +    KS        A   D   + K
Sbjct: 1562 IPAGGSKAVQEDSSKAWNTSTTADQTKTKSNEWSARVSNKSEIPAGGSKAVQEDSWGSSK 1621

Query: 697  LKHTDEGASDWNSKSGGWDLK---EKKVEASSTWGSSKELPPPTGSQ-GWGSANQGNTAP 864
             K   + A + NS+ G WD     + K    S WG  K++      Q  WGS  + +   
Sbjct: 1622 WKA--DVAQEDNSRLGAWDANAADQTKSNEWSGWGKKKDVTQEDNVQHSWGSGKRKDKVT 1679

Query: 865  D----GSSNWNA------ADKSHEKSGWGS----VHDAKSDLEKESSWSAPSNKTNDGDS 1002
                 GS +W A        KS E S WG     +    S   +  SW          D+
Sbjct: 1680 QEDNSGSGDWGANRTDLAITKSSEWSSWGKNKTEIPAGGSANVQNDSWGLGKLNDTQKDN 1739

Query: 1003 YG---WGSSSNEK---------SAPRDSPGWDAKVSGTEAEASVEAQSQWGKPG-----A 1131
             G   WG +S                + P  DA  SG     S    + WGKP      A
Sbjct: 1740 SGCGAWGENSGSAWVRNKAETIDGGSEKPQEDAWNSGNWKAESKVGNTTWGKPKSSESHA 1799

Query: 1132 MGSSDQWQEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWKX 1311
              S +Q  + ++SQGW +  +  + E+E    WG+   S  K +   +    S+  DWK 
Sbjct: 1800 WDSHNQSNQNSSSQGWESHIASANSENEKGFQWGKGRDSFKKNRFEGSQGRGSNAGDWK- 1858

Query: 1312 XXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDG 1491
                          +RN       QRLD++++EEQD+L ++EPIM SIRRIMQQ+GY+DG
Sbjct: 1859 --------------NRNRPPRAPGQRLDIYSSEEQDVLKDIEPIMQSIRRIMQQQGYSDG 1904

Query: 1492 DPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFS 1671
            DP++ EDQ ++++ V  +HPDK+ K+G G+D++MV+KH++FQ+SRC YVV  DGQ +DFS
Sbjct: 1905 DPLAAEDQLFVLENVFEHHPDKETKMGAGIDYVMVNKHSSFQESRCFYVVCKDGQSKDFS 1964

Query: 1672 YRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQ 1773
            YRKCL N + KKYPD  ESF  KY+R+PR  GDQ
Sbjct: 1965 YRKCLANYISKKYPDLAESFLGKYFRKPRARGDQ 1998



 Score = 86.3 bits (212), Expect = 4e-14
 Identities = 99/407 (24%), Positives = 157/407 (38%), Gaps = 37/407 (9%)
 Frame = +1

Query: 196  GWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSV----SKGDNDDASGWGS 363
            GW ++N+ G+S    T  E +  W ++V++ DS  ++ WN S     +K  +++ S WGS
Sbjct: 1327 GWASSNKDGRS---ETAQENS--WGKTVNQEDSSKSNAWNTSTTADQTKTKSNEWSDWGS 1381

Query: 364  KKNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAK-EL 540
             K++  A  +    +    S  W +                   T SK  +AWGS K E+
Sbjct: 1382 NKSEIPAGGSKAVQEDSSKSNAWNTST-----------TSNQTKTKSKEWSAWGSNKSEI 1430

Query: 541  PAPVS---------SKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTF 693
            PA  S         S TW +   +D++         +++W +  W S K      E+   
Sbjct: 1431 PACGSKAVQEDSSKSNTWNTSTTADQT------KTKSNEWSA--WGSNK-----SEIPAG 1477

Query: 694  KLKHTDEGASD---WNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQG-WGSANQGNTA 861
              K   E +S    WN  +     K K  E S+ WGS+K   P  GS+     +++ N  
Sbjct: 1478 GSKAVQEDSSKSNAWNRSTTADQTKTKSNEWSA-WGSNKSEIPAGGSKAVQEDSSKSNAW 1536

Query: 862  PDGSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNEKSAP 1041
               ++      KS+E S WGS         K    +  S    +  S  W +S+      
Sbjct: 1537 NTSTTADQTKTKSNEWSAWGS--------NKSEIPAGGSKAVQEDSSKAWNTSTTADQTK 1588

Query: 1042 RDSPGWDAKVS------------------GTEAEASVEAQSQWGKPGAMGSSDQWQEAAN 1167
              S  W A+VS                  G+    +  AQ    + GA  ++   Q  +N
Sbjct: 1589 TKSNEWSARVSNKSEIPAGGSKAVQEDSWGSSKWKADVAQEDNSRLGAWDANAADQTKSN 1648

Query: 1168 S-QGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDW 1305
               GWG    D + E   Q  WG     + K+K   T   +S + DW
Sbjct: 1649 EWSGWG-KKKDVTQEDNVQHSWG-----SGKRKDKVTQEDNSGSGDW 1689



 Score = 65.1 bits (157), Expect = 1e-07
 Identities = 68/272 (25%), Positives = 109/272 (40%), Gaps = 39/272 (14%)
 Frame = +1

Query: 604  NTPHKSASDWKSGCWDSRKD--APTTDEVDTFKLKHTDEGASD--WNSKSGGWDLKEKKV 771
            N      ++W SG   S KD  + T  E    K  + ++ +    WN+ +     K K  
Sbjct: 1316 NQTQSKTNEW-SGWASSNKDGRSETAQENSWGKTVNQEDSSKSNAWNTSTTADQTKTKSN 1374

Query: 772  EASSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNWNAAD-KSHEKSGWGSVHD----- 933
            E S  WGS+K   P  GS+     +  + A + S+  N    KS E S WGS        
Sbjct: 1375 EWSD-WGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTSNQTKTKSKEWSAWGSNKSEIPAC 1433

Query: 934  ----AKSDLEKESSW----SAPSNKTNDGDSYGWGSSSNE------KSAPRDSP---GWD 1062
                 + D  K ++W    +A   KT   +   WGS+ +E      K+   DS     W+
Sbjct: 1434 GSKAVQEDSSKSNTWNTSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWN 1493

Query: 1063 AKVSGTEAEASVEAQSQWG----KPGAMGSSDQWQEAANSQGWGASNSDNSGEHETQ--S 1224
               +  + +      S WG    +  A GS    ++++ S  W  S + +  + ++   S
Sbjct: 1494 RSTTADQTKTKSNEWSAWGSNKSEIPAGGSKAVQEDSSKSNAWNTSTTADQTKTKSNEWS 1553

Query: 1225 PWGQ------TGGSTWKKKGSSTPWGSSDTSD 1302
             WG        GGS   ++ SS  W +S T+D
Sbjct: 1554 AWGSNKSEIPAGGSKAVQEDSSKAWNTSTTAD 1585


>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  270 bits (690), Expect = 2e-69
 Identities = 186/548 (33%), Positives = 264/548 (48%), Gaps = 32/548 (5%)
 Frame = +1

Query: 250  EGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNKAEASNTWGGSKLPESSEG 429
            E +S + + V +  ++  + W   V     D    W   +NK   ++T      P +   
Sbjct: 1351 EHSSNFEKPVFEDSAEFQNTWENHVPGSGGD----WAVNQNKETTASTLK----PSAWSS 1402

Query: 430  WGSGNEIXXXXXXXXXXXXXXXTTS-KTSNAWGSAKELPAPVSSKTWGSVGES--DKSFL 600
            WG+                   +        WG+ K            S   S  D++F 
Sbjct: 1403 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFR 1462

Query: 601  ENTPHKSASDWKSGCWDSRKDAPTTDEVD-TFKLKHTDEGASDWNSKSGGWDLK--EKKV 771
            +  P  ++S W              DE D T   K+  +   D   +S  WD K  ++K 
Sbjct: 1463 DGRPQFASSAW----------GKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKT 1512

Query: 772  EASSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNWNA------ADKSHEKSGWGSVHD 933
              S+  G S        ++      Q + +P    +W+A        ++    GW S   
Sbjct: 1513 TQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDS--S 1570

Query: 934  AKSDLEKESSWSAPSNKTNDGDSYGWGSSSN----EKSAPRDSPGWDAKVSGTEAEASVE 1101
               D  K    S PS +  D     W SS N    + + P  + GWD+   G +    VE
Sbjct: 1571 TGKDWTKRKLQS-PSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSP--GAKGWNDVE 1627

Query: 1102 AQSQWGKPGAM------------GSSDQWQEAANSQGWGASNSDNSGEHETQSPWGQTGG 1245
             QSQW + G+             G S++  +  +SQGWG+ N+    E ETQS WGQ  G
Sbjct: 1628 EQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSG 1687

Query: 1246 STWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXX--SDGSRNTMFTVTRQRLDLFTAEEQD 1419
               + +GS   WGS++T +WK               D S   +FT TRQR+D+FT+EEQD
Sbjct: 1688 KKSRPEGSRG-WGSNNT-EWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQD 1745

Query: 1420 ILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVS 1599
            IL +VEPIM SIRRIM Q GY DGDP+S +DQSYI+DKV   HPDK  K+G G+D++MVS
Sbjct: 1746 ILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVS 1805

Query: 1600 KHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQ 1779
            +H++F +SRC YVVS DG K+DFSYRKCLEN +K+KYPD+ E+F  KY+RRPR  G++E+
Sbjct: 1806 RHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRER 1865

Query: 1780 K--PNNGG 1797
               P +GG
Sbjct: 1866 SVIPEDGG 1873


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  270 bits (690), Expect = 2e-69
 Identities = 186/548 (33%), Positives = 264/548 (48%), Gaps = 32/548 (5%)
 Frame = +1

Query: 250  EGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNKAEASNTWGGSKLPESSEG 429
            E +S + + V +  ++  + W   V     D    W   +NK   ++T      P +   
Sbjct: 1291 EHSSNFEKPVFEDSAEFQNTWENHVPGSGGD----WAVNQNKETTASTLK----PSAWSS 1342

Query: 430  WGSGNEIXXXXXXXXXXXXXXXTTS-KTSNAWGSAKELPAPVSSKTWGSVGES--DKSFL 600
            WG+                   +        WG+ K            S   S  D++F 
Sbjct: 1343 WGTDKVTMKDTFSTREPDESSRSAGWDDKGTWGTDKAQNTAFRRTHEDSPRSSGRDETFR 1402

Query: 601  ENTPHKSASDWKSGCWDSRKDAPTTDEVD-TFKLKHTDEGASDWNSKSGGWDLK--EKKV 771
            +  P  ++S W              DE D T   K+  +   D   +S  WD K  ++K 
Sbjct: 1403 DGRPQFASSAW----------GKKIDEADKTGWNKNDGKPQMDKLRESYDWDCKVAQEKT 1452

Query: 772  EASSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNWNA------ADKSHEKSGWGSVHD 933
              S+  G S        ++      Q + +P    +W+A        ++    GW S   
Sbjct: 1453 TQSTYGGISSTTGDWKKNELQMEVVQHDESPVNEHSWDANLPEDPLAQATTSVGWDS--S 1510

Query: 934  AKSDLEKESSWSAPSNKTNDGDSYGWGSSSN----EKSAPRDSPGWDAKVSGTEAEASVE 1101
               D  K    S PS +  D     W SS N    + + P  + GWD+   G +    VE
Sbjct: 1511 TGKDWTKRKLQS-PSEQQRDPAIKSWSSSHNVMKEQSNQPASTHGWDSP--GAKGWNDVE 1567

Query: 1102 AQSQWGKPGAM------------GSSDQWQEAANSQGWGASNSDNSGEHETQSPWGQTGG 1245
             QSQW + G+             G S++  +  +SQGWG+ N+    E ETQS WGQ  G
Sbjct: 1568 EQSQWNQRGSAVKNDQSESSHGWGPSNEQNQLPSSQGWGSPNAGAGHESETQSQWGQPSG 1627

Query: 1246 STWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXX--SDGSRNTMFTVTRQRLDLFTAEEQD 1419
               + +GS   WGS++T +WK               D S   +FT TRQR+D+FT+EEQD
Sbjct: 1628 KKSRPEGSRG-WGSNNT-EWKNKKNRPNKPQGPLNDDYSAGGIFTATRQRVDIFTSEEQD 1685

Query: 1420 ILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVS 1599
            IL +VEPIM SIRRIM Q GY DGDP+S +DQSYI+DKV   HPDK  K+G G+D++MVS
Sbjct: 1686 ILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHPDKAVKMGTGIDYVMVS 1745

Query: 1600 KHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQ 1779
            +H++F +SRC YVVS DG K+DFSYRKCLEN +K+KYPD+ E+F  KY+RRPR  G++E+
Sbjct: 1746 RHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETFIGKYFRRPRAGGNRER 1805

Query: 1780 K--PNNGG 1797
               P +GG
Sbjct: 1806 SVIPEDGG 1813


>ref|XP_006420718.1| hypothetical protein CICLE_v10004129mg [Citrus clementina]
            gi|557522591|gb|ESR33958.1| hypothetical protein
            CICLE_v10004129mg [Citrus clementina]
          Length = 1867

 Score =  265 bits (678), Expect = 4e-68
 Identities = 190/560 (33%), Positives = 266/560 (47%), Gaps = 31/560 (5%)
 Frame = +1

Query: 190  SEGWGAANESGKSTQDHTTDEGA-----SGWNQSVSKGDSDDASNWNQSVSKGDNDDASG 354
            S GW      GKS+ D     G+     SGW    S G+S  +  W ++V        S 
Sbjct: 1341 SSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESS-SDKW-ENVGSPAAKSFSE 1398

Query: 355  WGSKKNKAEASNTWGG------SKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSN 516
            WG++   A    ++G       S   ++S GWGS  E                + SK  +
Sbjct: 1399 WGTE---ASWGKSFGDKPENVRSPAAKTSSGWGS--EASWGKSPGDRQENVGRSASKPLS 1453

Query: 517  AWGSAKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKS-GCWDSRKDAPTTDEVDTF 693
             WG+           +WG   E     +E T  K +S W +   WD   +  T ++V   
Sbjct: 1454 GWGA---------KASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEV-TLEKV--- 1500

Query: 694  KLKHTDEGASDWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQGWG-SANQGNTAPDG 870
                    A+   +   GW  + +    SS W   K+    T S  WG + ++ N+  D 
Sbjct: 1501 --------AAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS--WGRNGSEENSGWDT 1550

Query: 871  SSNWNAADKSHEKSGWGSVHDAKSDLEKESS-WSAPSNKTNDGDSYGWGSSSNEKSAPRD 1047
             ++WN   K+ +K     + D  S +E  SS W A  + +  G       S+NEKS    
Sbjct: 1551 KASWNT--KALDK-----LDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQ 1603

Query: 1048 SPGWDAKVSGTEAEASVEAQSQWGKP----GAMGSSDQ-W----------QEAANSQGWG 1182
              GW+        +A     S WGK      A G+ D  W           + A+S  W 
Sbjct: 1604 IGGWNVP------DAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPASSNAWD 1657

Query: 1183 ASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXX--SDGS 1356
              ++    E E Q  WGQ+    +KK      W SS + +WK               D +
Sbjct: 1658 LPDATGGSETEMQV-WGQSRKEPFKKNRG---WASS-SGEWKGKKNRPPRSPGVVNDDST 1712

Query: 1357 RNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKV 1536
             N M+TVTRQRLD+FT+EEQDIL++VEPIM SIRRIM Q GY DGD +S +D+S+I D V
Sbjct: 1713 VNAMYTVTRQRLDMFTSEEQDILSDVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNV 1772

Query: 1537 LAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPD 1716
              YHPDK  K+G G+DH  V KH +FQDSRC++VVS DG +QDFSYRKCLE+ ++ KYP+
Sbjct: 1773 FNYHPDKAMKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPE 1832

Query: 1717 HVESFFSKYWRRPRNAGDQE 1776
             V+ F  KY+RRPR+ G++E
Sbjct: 1833 FVDEFIGKYFRRPRSGGNRE 1852



 Score = 69.7 bits (169), Expect = 4e-09
 Identities = 96/408 (23%), Positives = 140/408 (34%), Gaps = 63/408 (15%)
 Frame = +1

Query: 22   GHTADEGASGWNQSGGWGS-------KKNLPE-------TSSAWGSS------------- 120
            G + ++ +SGW   G WG        K   P        T ++WG S             
Sbjct: 1334 GTSLEKPSSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESSSDKWENVGSPAA 1393

Query: 121  KEISVPESCAAWGST-------VDSRAPASSEGWGAANESGKSTQDHTTDEG------AS 261
            K  S   + A+WG +       V S A  +S GWG+    GKS  D   + G       S
Sbjct: 1394 KSFSEWGTEASWGKSFGDKPENVRSPAAKTSSGWGSEASWGKSPGDRQENVGRSASKPLS 1453

Query: 262  GWNQSVSKGDS--DDASNWNQSVSKGDNDDASGWGSKKN---KAEASNTWGGSKLPESSE 426
            GW    S G S  D       +V+K     +S WG++ +    +E +     +       
Sbjct: 1454 GWGAKASWGKSSEDKLEEVETTVAK----PSSAWGTEASWDKSSEVTLEKVAAPAENPLS 1509

Query: 427  GWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPAPVSSKTWGSVGESDKSFLEN 606
            GWG+  +                  S  S+ W   K+     +S  WG  G  + S  + 
Sbjct: 1510 GWGTEAQ-----------------DSGKSSDWSEWKDHANATAS--WGRNGSEENSGWDT 1550

Query: 607  TPH------------KSASDWKSGCWDSRKDAPTTDEVDTFKLKHTDEGASDWNSKSGGW 750
                            SA +  S  W +R+D  T    D+ K    ++       + GGW
Sbjct: 1551 KASWNTKALDKLDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIV---HQIGGW 1607

Query: 751  DLKEKKVEASSTWGSSK--ELPPPTGSQGWGSANQGNTAPDGSSNWNAADKSHEKSGWGS 924
            ++ + K    S+WG  K  E    T    WG            ++ NA D          
Sbjct: 1608 NVPDAKGTDDSSWGKQKLTENAKGTDDSSWGKQKHTENESSQPASSNAWD---------- 1657

Query: 925  VHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSSNE----KSAPRDSPG 1056
            + DA    E E      S K     + GW SSS E    K+ P  SPG
Sbjct: 1658 LPDATGGSETEMQVWGQSRKEPFKKNRGWASSSGEWKGKKNRPPRSPG 1705


>ref|XP_006470866.1| PREDICTED: DNA-directed RNA polymerase V subunit 1-like [Citrus
            sinensis]
          Length = 1865

 Score =  265 bits (676), Expect = 7e-68
 Identities = 187/552 (33%), Positives = 262/552 (47%), Gaps = 23/552 (4%)
 Frame = +1

Query: 190  SEGWGAANESGKSTQDHTTDEGA-----SGWNQSVSKGDSDDASNWNQSVSKGDNDDASG 354
            S GW      GKS+ D     G+     SGW    S G+S     W ++V        S 
Sbjct: 1340 SSGWRTEGAWGKSSDDKLEKAGSPSRKPSGWGTEASWGESS-CDKW-ENVGSPAAKSFSE 1397

Query: 355  WGSKKN--KAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGS 528
            WG++ +  K+        S   ++S GWGS  E                + SK  + WG+
Sbjct: 1398 WGTEASWGKSFGDKPENVSPAAKTSSGWGS--EASWGKSSGDRQENVGGSASKPLSGWGA 1455

Query: 529  AKELPAPVSSKTWGSVGESDKSFLENTPHKSASDWKS-GCWDSRKDAPTTDEVDTFKLKH 705
                       +WG   E     +E T  K +S W +   WD   +  T ++V       
Sbjct: 1456 ---------KASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEV-TLEKV------- 1498

Query: 706  TDEGASDWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQGWG-SANQGNTAPDGSSNW 882
                A+   +   GW  + +    SS W   K+    T S  WG + ++ N+  D  ++W
Sbjct: 1499 ----AAPAENPLSGWGTEAQDSGKSSDWSEWKDHANATAS--WGRNGSEENSGWDTKASW 1552

Query: 883  NAADKSHEKSGWGSVHDAKSDLEKESS-WSAPSNKTNDGDSYGWGSSSNEKSAPRDSPGW 1059
                K+ +K     + D  S +E  SS W A  + +  G       S+NEKS      GW
Sbjct: 1553 KT--KALDK-----LDDVGSAVENSSSVWGAREDFSTKGWEDSSKPSANEKSIVHQIGGW 1605

Query: 1060 DAK-VSGTE----------AEASVEAQSQWGKPGAMGSSDQWQEAANSQGWGASNSDNSG 1206
            +     GT+            A     S WGK     + ++  + A+S  W   ++    
Sbjct: 1606 NVPDAKGTDDSCWGKQKLTENAKGTDDSSWGKQ--KHTENESPQPASSNAWDLPDATGGS 1663

Query: 1207 EHETQSPWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXX--SDGSRNTMFTVT 1380
            E E Q  WGQ+    +KK      W SS + +WK               D + N M+TVT
Sbjct: 1664 ETEMQV-WGQSRKEPFKKNRG---WASS-SGEWKGKKNRPPRSPGVVNDDSTVNAMYTVT 1718

Query: 1381 RQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKD 1560
            RQRLD+FT+EEQDIL+ VEPIM SIRRIM Q GY DGD +S +D+S+I D V  YHPDK 
Sbjct: 1719 RQRLDMFTSEEQDILSHVEPIMRSIRRIMHQSGYNDGDRLSADDKSFIFDNVFNYHPDKA 1778

Query: 1561 AKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSK 1740
             K+G G+DH  V KH +FQDSRC++VVS DG +QDFSYRKCLE+ ++ KYPD V+ F  K
Sbjct: 1779 MKMGAGIDHFKVDKHGSFQDSRCLFVVSTDGSQQDFSYRKCLESFIRGKYPDLVDEFIGK 1838

Query: 1741 YWRRPRNAGDQE 1776
            Y+RRPR+ G++E
Sbjct: 1839 YFRRPRSGGNRE 1850



 Score = 73.9 bits (180), Expect = 2e-10
 Identities = 81/316 (25%), Positives = 121/316 (38%), Gaps = 41/316 (12%)
 Frame = +1

Query: 22   GHTADEGASGWNQSGGWG-SKKNLPE-------TSSAWGSSKEISVPESCAAWGSTVDSR 177
            G  A +  S W     WG S  + PE       TSS WGS  E S  +S       V   
Sbjct: 1388 GSPAAKSFSEWGTEASWGKSFGDKPENVSPAAKTSSGWGS--EASWGKSSGDRQENVGGS 1445

Query: 178  APASSEGWGAANESGKSTQDH------TTDEGASGWNQSVSKGDSDDA------------ 303
            A     GWGA    GKS++D       T  + +S W    S   S +             
Sbjct: 1446 ASKPLSGWGAKASWGKSSEDKLEEVETTVAKPSSAWGTEASWDKSSEVTLEKVAAPAENP 1505

Query: 304  -SNWNQSVSKGDNDDASGWGSKKNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXX 480
             S W       D+  +S W   K+ A A+ +WG +   E+S GW +  +           
Sbjct: 1506 LSGWGTEAQ--DSGKSSDWSEWKDHANATASWGRNGSEENS-GWDT--KASWKTKALDKL 1560

Query: 481  XXXXXTTSKTSNAWGSAKELPAPVSSKTW---GSVGESDKSFLE-----NTPHKSASDWK 636
                     +S+ WG+ ++     S+K W        ++KS +      N P    +D  
Sbjct: 1561 DDVGSAVENSSSVWGAREDF----STKGWEDSSKPSANEKSIVHQIGGWNVPDAKGTD-- 1614

Query: 637  SGCWDSRK---DAPTTDEVDTFKLKHTDEGASDWNSKSGGWDLKEKKVEASS---TWGSS 798
              CW  +K   +A  TD+    K KHT E  S   + S  WDL +    + +    WG S
Sbjct: 1615 DSCWGKQKLTENAKGTDDSSWGKQKHT-ENESPQPASSNAWDLPDATGGSETEMQVWGQS 1673

Query: 799  KELPPPTGSQGWGSAN 846
            ++  P   ++GW S++
Sbjct: 1674 RK-EPFKKNRGWASSS 1688


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  259 bits (663), Expect = 2e-66
 Identities = 195/645 (30%), Positives = 284/645 (44%), Gaps = 71/645 (11%)
 Frame = +1

Query: 64   GGWGSKKNLPETSSA-------WGSSKEISVPESCAAWGSTVDSRAPASSEGWGAANESG 222
            G W S +N   T+S+       WG   E  V        +  +++   S+  W   +  G
Sbjct: 1388 GQWESNENGKATNSSDGNDWSGWGRKAEPDV--------TVTNAQENTSNSAWDTTSSWG 1439

Query: 223  KSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSK--------KNKA 378
                + + D   S  N S  + + D  ++  ++   G  D AS WG+K        +   
Sbjct: 1440 NKATNSSNDNDWS--NCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAP 1497

Query: 379  EASNTWGGSKLP--ESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPAP- 549
            + S+ W G +    E+ + +    E+               T SKT + W S  +  A  
Sbjct: 1498 KKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGT-SKTEDNWSSQVKDKAES 1556

Query: 550  -------VSSKT--WGSVGESDKSFLENTPHKSASDWKSGC-----------WDSRKD-- 663
                   VSSKT  WGS G   K+      H+S + W  G            WD +    
Sbjct: 1557 FQVQVQEVSSKTNGWGSTGGWTKN--SGGDHQSEAGWNDGQASMDREKVSDRWDRKATQK 1614

Query: 664  ----------APTT-DEVDTFKLKHTDEGASDWNSKSGGWDLKEKKVEASS-----TWGS 795
                      +PT  D  D+F  K  D   S  N     WD ++K  EAS       WG 
Sbjct: 1615 LESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHS---WD-RQKSPEASQGFGNDAWGQ 1670

Query: 796  SKE---LPPPTGSQ-----GWGSANQGNTAPD-GSSNWNAADKSHEKSGWGSVHDAKSDL 948
             K    + P   +      GWGS  + N   D G        KS +  GW S        
Sbjct: 1671 QKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPW 1730

Query: 949  EKESSWSAPSNKTNDGDSYG-WG-----SSSNEKSAPRDSPGWDAKVSGTEAEASVEAQS 1110
            +K+ S  A  +  +  DS G WG     S    + +  DS    +++   E     E Q 
Sbjct: 1731 DKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQK 1790

Query: 1111 QWGKPGAMGSSDQWQEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSS 1290
                    GS+ +  E  +S GW   N  + G       WG   G  WK + +  P    
Sbjct: 1791 SPEVSHGWGSNKESSEQTSSHGWDKKNQGSKG-------WGGNAGE-WKNRKNRPPKSPG 1842

Query: 1291 DTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQ 1470
             ++D               D +   ++T + QRLD+FT+EEQDIL ++EPIM SIR++M 
Sbjct: 1843 MSND---------------DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMH 1887

Query: 1471 QEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVD 1650
            Q GY DGDP+S EDQS+++  V  +HPDK AK+G G+DH MVS+H++FQ+SRC YVV+ D
Sbjct: 1888 QSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTD 1947

Query: 1651 GQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQKP 1785
            G K+DFSYRKCL+N +K KYPD  E F +KY+R+PR   ++++ P
Sbjct: 1948 GHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNRNRDRNP 1992


>gb|AAY89362.1| RNA polymerase IV largest subunit [Arabidopsis thaliana]
          Length = 1976

 Score =  259 bits (663), Expect = 2e-66
 Identities = 185/612 (30%), Positives = 270/612 (44%), Gaps = 30/612 (4%)
 Frame = +1

Query: 34   DEG---ASGWNQSGGWGSKKNLPETSSAWGSSKEI---SVPESCAAWGSTVDSRAPASSE 195
            DEG    + W +S  W    N     S WG SK     + PES   W  T +       +
Sbjct: 1304 DEGKPSGANWEKSSSWD---NGCSGGSEWGVSKSTGGEANPES--NWEKTTNVE---KED 1355

Query: 196  GWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNK 375
             W + N + K  Q+ +  +    W       D+D   NW  S +  D+         +N 
Sbjct: 1356 AWSSWN-TRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSI------VPENN 1408

Query: 376  AEASNTWGGSKLPESS---EGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPA 546
               S+ WG   + + S   + WG                     T     AWGS      
Sbjct: 1409 EPTSDVWGHKSVSDKSWDKKNWG---------------------TESAPAAWGST----- 1442

Query: 547  PVSSKTWGSVGESDKSFLEN--------TPHKSASDWKSGC-----WDSRKDAPTTDEVD 687
               +  WGS   SDK   E         +  K+ SD  SG      W+ +     ++   
Sbjct: 1443 --DAAVWGS---SDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGAT 1497

Query: 688  TFKLKHTDEGASDWNSKSGGWDLKEKKVEAS-STWGSS--KELPPPTGSQGWGSANQGNT 858
                  T  GA+ WNS    WD K  + ++  + WGS   K     +G   WG+ ++  +
Sbjct: 1498 WGSSDKTKSGAAAWNS----WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKS 1553

Query: 859  APD-GSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSS-NEK 1032
              + G + W   DK + ++  G       D +K  + S P+      D+  WGSS  N  
Sbjct: 1554 ETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPA-AWGSTDAAAWGSSDKNNS 1612

Query: 1033 SAPRDSPGWDAKVSGT-EAEASVEAQSQWGKPGAMGSSDQWQEAANSQGWGASNSDNSGE 1209
                D+  W ++   T E E+   A   WG+P          E   +  W +     S E
Sbjct: 1613 ETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNP-WVSLKETKSRE 1671

Query: 1210 HETQ--SPWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTR 1383
             + +  S WG       KK  SS  W +   +DWK             D     MFT TR
Sbjct: 1672 KDDKERSQWGNPA----KKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLA-PMFTATR 1726

Query: 1384 QRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDA 1563
            QRLD FT+EEQ++L++VEP+M ++R+IM    Y DGDPIS +D++++++K+L +HP K+ 
Sbjct: 1727 QRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKET 1786

Query: 1564 KVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKY 1743
            K+G G+D I V KHT F DSRC +VVS DG KQDFSYRK L N + KKYPD  E F  KY
Sbjct: 1787 KLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846

Query: 1744 WRRPRNAGDQEQ 1779
            + +PR +G++++
Sbjct: 1847 FTKPRPSGNRDR 1858


>ref|NP_181532.2| nuclear RNA polymerase D1B [Arabidopsis thaliana]
            gi|75320513|sp|Q5D869.1|NRPE1_ARATH RecName:
            Full=DNA-directed RNA polymerase V subunit 1; AltName:
            Full=DNA-directed RNA polymerase D subunit 1b;
            Short=AtNRPD1b; Short=Nuclear RNA polymerase D 1b;
            AltName: Full=DNA-directed RNA polymerase E subunit 1;
            Short=Nuclear RNA polymerase E 1; AltName: Full=Protein
            DEFECTIVE IN MERISTEM SILENCING 5; AltName: Full=Protein
            DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 3; AltName:
            Full=Protein RNA-DIRECTED DNA METHYLATION DEFECTIVE 1;
            AltName: Full=RNA polymerase IV subunit 1; Short=POL IV 1
            gi|59939210|gb|AAX12373.1| DNA-directed RNA polymerase
            alpha subunit [Arabidopsis thaliana]
            gi|62822917|gb|AAY15198.1| DNA-dependent RNA polymerase
            large subunit [Arabidopsis thaliana]
            gi|330254673|gb|AEC09767.1| nuclear RNA polymerase D1B
            [Arabidopsis thaliana]
          Length = 1976

 Score =  259 bits (663), Expect = 2e-66
 Identities = 185/612 (30%), Positives = 270/612 (44%), Gaps = 30/612 (4%)
 Frame = +1

Query: 34   DEG---ASGWNQSGGWGSKKNLPETSSAWGSSKEI---SVPESCAAWGSTVDSRAPASSE 195
            DEG    + W +S  W    N     S WG SK     + PES   W  T +       +
Sbjct: 1304 DEGKPSGANWEKSSSWD---NGCSGGSEWGVSKSTGGEANPES--NWEKTTNVE---KED 1355

Query: 196  GWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNK 375
             W + N + K  Q+ +  +    W       D+D   NW  S +  D+         +N 
Sbjct: 1356 AWSSWN-TRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSI------VPENN 1408

Query: 376  AEASNTWGGSKLPESS---EGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPA 546
               S+ WG   + + S   + WG                     T     AWGS      
Sbjct: 1409 EPTSDVWGHKSVSDKSWDKKNWG---------------------TESAPAAWGST----- 1442

Query: 547  PVSSKTWGSVGESDKSFLEN--------TPHKSASDWKSGC-----WDSRKDAPTTDEVD 687
               +  WGS   SDK   E         +  K+ SD  SG      W+ +     ++   
Sbjct: 1443 --DAAVWGS---SDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGAT 1497

Query: 688  TFKLKHTDEGASDWNSKSGGWDLKEKKVEAS-STWGSS--KELPPPTGSQGWGSANQGNT 858
                  T  GA+ WNS    WD K  + ++  + WGS   K     +G   WG+ ++  +
Sbjct: 1498 WGSSDKTKSGAAAWNS----WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKS 1553

Query: 859  APD-GSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSS-NEK 1032
              + G + W   DK + ++  G       D +K  + S P+      D+  WGSS  N  
Sbjct: 1554 ETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPA-AWGSTDAAAWGSSDKNNS 1612

Query: 1033 SAPRDSPGWDAKVSGT-EAEASVEAQSQWGKPGAMGSSDQWQEAANSQGWGASNSDNSGE 1209
                D+  W ++   T E E+   A   WG+P          E   +  W +     S E
Sbjct: 1613 ETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNP-WVSLKETKSRE 1671

Query: 1210 HETQ--SPWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTR 1383
             + +  S WG       KK  SS  W +   +DWK             D     MFT TR
Sbjct: 1672 KDDKERSQWGNPA----KKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLA-PMFTATR 1726

Query: 1384 QRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDA 1563
            QRLD FT+EEQ++L++VEP+M ++R+IM    Y DGDPIS +D++++++K+L +HP K+ 
Sbjct: 1727 QRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKET 1786

Query: 1564 KVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKY 1743
            K+G G+D I V KHT F DSRC +VVS DG KQDFSYRK L N + KKYPD  E F  KY
Sbjct: 1787 KLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 1846

Query: 1744 WRRPRNAGDQEQ 1779
            + +PR +G++++
Sbjct: 1847 FTKPRPSGNRDR 1858


>gb|AAB95289.1| unknown protein [Arabidopsis thaliana]
          Length = 839

 Score =  259 bits (663), Expect = 2e-66
 Identities = 185/612 (30%), Positives = 270/612 (44%), Gaps = 30/612 (4%)
 Frame = +1

Query: 34   DEG---ASGWNQSGGWGSKKNLPETSSAWGSSKEI---SVPESCAAWGSTVDSRAPASSE 195
            DEG    + W +S  W    N     S WG SK     + PES   W  T +       +
Sbjct: 167  DEGKPSGANWEKSSSWD---NGCSGGSEWGVSKSTGGEANPES--NWEKTTNVE---KED 218

Query: 196  GWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNK 375
             W + N + K  Q+ +  +    W       D+D   NW  S +  D+         +N 
Sbjct: 219  AWSSWN-TRKDAQESSKSDSGGAWGIKTKDADADTTPNWETSPAPKDSI------VPENN 271

Query: 376  AEASNTWGGSKLPESS---EGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPA 546
               S+ WG   + + S   + WG                     T     AWGS      
Sbjct: 272  EPTSDVWGHKSVSDKSWDKKNWG---------------------TESAPAAWGST----- 305

Query: 547  PVSSKTWGSVGESDKSFLEN--------TPHKSASDWKSGC-----WDSRKDAPTTDEVD 687
               +  WGS   SDK   E         +  K+ SD  SG      W+ +     ++   
Sbjct: 306  --DAAVWGS---SDKKNSETESDAAAWGSRDKNNSDVGSGAGVLGPWNKKSSETESNGAT 360

Query: 688  TFKLKHTDEGASDWNSKSGGWDLKEKKVEAS-STWGSS--KELPPPTGSQGWGSANQGNT 858
                  T  GA+ WNS    WD K  + ++  + WGS   K     +G   WG+ ++  +
Sbjct: 361  WGSSDKTKSGAAAWNS----WDKKNIETDSEPAAWGSQGKKNSETESGPAAWGAWDKKKS 416

Query: 859  APD-GSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWGSSS-NEK 1032
              + G + W   DK + ++  G       D +K  + S P+      D+  WGSS  N  
Sbjct: 417  ETEPGPAGWGMGDKKNSETELGPAAMGNWDKKKSDTKSGPA-AWGSTDAAAWGSSDKNNS 475

Query: 1033 SAPRDSPGWDAKVSGT-EAEASVEAQSQWGKPGAMGSSDQWQEAANSQGWGASNSDNSGE 1209
                D+  W ++   T E E+   A   WG+P          E   +  W +     S E
Sbjct: 476  ETESDAAAWGSRNKKTSEIESGAGAWGSWGQPSPTAEDKDTNEDDRNP-WVSLKETKSRE 534

Query: 1210 HETQ--SPWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTR 1383
             + +  S WG       KK  SS  W +   +DWK             D     MFT TR
Sbjct: 535  KDDKERSQWGNPA----KKFPSSGGWSNGGGADWKGNRNHTPRPPRSEDNLA-PMFTATR 589

Query: 1384 QRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDA 1563
            QRLD FT+EEQ++L++VEP+M ++R+IM    Y DGDPIS +D++++++K+L +HP K+ 
Sbjct: 590  QRLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKET 649

Query: 1564 KVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKY 1743
            K+G G+D I V KHT F DSRC +VVS DG KQDFSYRK L N + KKYPD  E F  KY
Sbjct: 650  KLGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMKKYPDRAEEFIDKY 709

Query: 1744 WRRPRNAGDQEQ 1779
            + +PR +G++++
Sbjct: 710  FTKPRPSGNRDR 721


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  259 bits (661), Expect = 4e-66
 Identities = 195/645 (30%), Positives = 283/645 (43%), Gaps = 71/645 (11%)
 Frame = +1

Query: 64   GGWGSKKNLPETSSA-------WGSSKEISVPESCAAWGSTVDSRAPASSEGWGAANESG 222
            G W S +N   T+S+       WG   E  V        +  +++   S+  W   +  G
Sbjct: 1328 GQWESNENGKATNSSDGNDWSGWGRKAEPDV--------TVTNAQENTSNSAWDTTSSWG 1379

Query: 223  KSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSK--------KNKA 378
                + + D   S  N S  + + D  ++  ++   G  D AS WG+K        +   
Sbjct: 1380 NKATNSSNDNDWS--NCSTKEVERDSFTSMEKTPKSGGWDSASTWGTKTKDDSFKRETAP 1437

Query: 379  EASNTWGGSKLP--ESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPAP- 549
            + S+ W G +    E+ + +    E+               T SKT + W S  +  A  
Sbjct: 1438 KKSSQWSGLQKDKAETQDAFHKKAEMASKSGGWEDKAWSRGT-SKTEDNWSSQVKDKAES 1496

Query: 550  -------VSSKT--WGSVGESDKSFLENTPHKSASDWKSGC-----------WDSRKD-- 663
                   VSSKT  WGS G   K+      H+S + W  G            WD +    
Sbjct: 1497 FQVQVQEVSSKTNGWGSTGGWTKN--SGGDHQSEAGWNDGQASMDREKVSDRWDRKATQK 1554

Query: 664  ----------APTT-DEVDTFKLKHTDEGASDWNSKSGGWDLKEKKVEASS-----TWGS 795
                      +PT  D  D+F  K  D   S  N     WD ++K  EAS       WG 
Sbjct: 1555 LESHQTSSWGSPTVGDSKDSFPSKAVDHSDSVVNHS---WD-RQKSPEASQGFGNDAWGQ 1610

Query: 796  SKE---LPPPTGSQ-----GWGSANQGNTAPD-GSSNWNAADKSHEKSGWGSVHDAKSDL 948
             K    + P   +      GWGS  + N   D G        KS +  GW S        
Sbjct: 1611 QKSRDVIKPSLANNESNLSGWGSQIESNEGSDHGFDQVTNEQKSSDTRGWDSQEKTDKPW 1670

Query: 949  EKESSWSAPSNKTNDGDSYG-WG-----SSSNEKSAPRDSPGWDAKVSGTEAEASVEAQS 1110
            +K+ S  A  +  +  DS G WG     S    + +  DS    +++   E     E Q 
Sbjct: 1671 DKQKSLEASQSWGSQNDSLGSWGQPQRASEECSRESQDDSSTQFSQLKPPETSLGWEQQK 1730

Query: 1111 QWGKPGAMGSSDQWQEAANSQGWGASNSDNSGEHETQSPWGQTGGSTWKKKGSSTPWGSS 1290
                    GS  +  E  +S GW   N  + G       WG   G  WK + +  P    
Sbjct: 1731 SPEVSHGWGSHKESSEQTSSHGWDKKNQGSKG-------WGGNAGE-WKNRKNRPPKSPG 1782

Query: 1291 DTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQ 1470
             ++D               D +   ++T + QRLD+FT+EEQDIL ++EPIM SIR++M 
Sbjct: 1783 MSND---------------DANLRALYTASGQRLDMFTSEEQDILADIEPIMQSIRKVMH 1827

Query: 1471 QEGYTDGDPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVD 1650
            Q GY DGDP+S EDQS+++  V  +HPDK AK+G G+DH MVS+H++FQ+SRC YVV+ D
Sbjct: 1828 QSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMVSRHSSFQESRCFYVVTTD 1887

Query: 1651 GQKQDFSYRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQKP 1785
            G K+DFSYRKCL+N +K KYPD  E F +KY+R+PR   ++++ P
Sbjct: 1888 GHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRPNRNRDRNP 1932


>ref|XP_003627850.1| Protein DCL [Medicago truncatula] gi|355521872|gb|AET02326.1| Protein
            DCL [Medicago truncatula]
          Length = 481

 Score =  258 bits (659), Expect = 6e-66
 Identities = 159/452 (35%), Positives = 231/452 (51%), Gaps = 19/452 (4%)
 Frame = +1

Query: 499  TSKTSNAWGSAKELPAPV-----SSKTWGSVGESDKSFLENTPHKSASDWKSGCWD---- 651
            T +  NAWG+ K     +     +S  W + G S     E    K    W S  W     
Sbjct: 13   TLRNGNAWGATKLKSNDIQEDSTNSGGWKAWGSSKPEVHEGESTKVQDSWNSQKWKAAED 72

Query: 652  -SRKDAPTTDEVDTFKLKHTDEGASDWNSKSGGWDLKEKKVEASSTWGSSKELPPPTGSQ 828
             S+KD+  +      K K  D  +S W  K     +  +    S+ W    E  P     
Sbjct: 73   VSQKDSQKSSAWGATKPKSNDNRSS-WGQKKDEIHVMPEDSSRSNAW----EQKPENVKD 127

Query: 829  GWGSANQGNTAPDGSSNWNAADKSHEKSGWGSVHDAKSDLEKESSW-SAPSNKTNDGDSY 1005
             W +       P  +S+W  A KS E   W S ++  +   K +S  + P +  N+ DS 
Sbjct: 128  SWVAK-----VPVANSSWGKA-KSPENRPWDSKNEPNNSFGKPNSQENEPWDSKNESDS- 180

Query: 1006 GWGSSSNEKSAPRDSPGWDAKVSGTEAEASVEAQSQWGKPGAM-----GSSDQWQEAANS 1170
             WG   +++S P     WD+K          E+ S WGKP +       S ++  + A S
Sbjct: 181  SWGKPKSQESQP-----WDSKN---------ESNSSWGKPKSQENHPWDSKNESNQTAGS 226

Query: 1171 QGWGASNSDNSGEHETQSPWGQTGGSTWKK---KGSSTPWGSSDTSDWKXXXXXXXXXXX 1341
            +GW +  +  + E +    WG+ G  ++KK   +GS +  G  +  DWK           
Sbjct: 227  RGWDSQVASANSESDKSFQWGKQGRDSFKKNRFEGSQS--GGPNAGDWK----------- 273

Query: 1342 XSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSY 1521
                +R+       QR +L+T EEQDI+ ++EPI+ SIRRIMQ +GY DGDP++ EDQ Y
Sbjct: 274  ----NRSRPVRPPGQRFELYTPEEQDIMKDIEPIVQSIRRIMQLQGYNDGDPLANEDQKY 329

Query: 1522 IVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVK 1701
            +++ V  +HPDK+ K+G G+DH+MVSKH+NFQDSRC+YVV  DG+K+DFSYRKCLENLV+
Sbjct: 330  VLENVFEHHPDKETKMGVGVDHVMVSKHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVR 389

Query: 1702 KKYPDHVESFFSKYWRRPRNAGDQEQKPNNGG 1797
            KKYP+  ESF  KY+R+P+    ++Q PN  G
Sbjct: 390  KKYPETAESFCGKYFRKPQPRVKRDQTPNPAG 421


>ref|XP_006293553.1| hypothetical protein CARUB_v10022497mg [Capsella rubella]
            gi|482562261|gb|EOA26451.1| hypothetical protein
            CARUB_v10022497mg [Capsella rubella]
          Length = 1959

 Score =  255 bits (651), Expect = 5e-65
 Identities = 172/576 (29%), Positives = 264/576 (45%), Gaps = 53/576 (9%)
 Frame = +1

Query: 211  NESGKSTQDH-----TTDEGASGWNQ-SVSK---GDSDDASNWNQSVSKGDNDDASGWGS 363
            ++ GK ++ +     + D G SG ++  VSK   G+S+  SNW ++ S    D  SGW +
Sbjct: 1303 HDDGKQSESNWEKSSSWDNGCSGGSEWGVSKSTGGESNTESNWEKTTSVEKEDAWSGWNT 1362

Query: 364  KKNKAEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELP 543
            KK+  E+S +  G      ++   +                       TS+ WG      
Sbjct: 1363 KKDAQESSKSDSGGAWGIKTKDDDANTTPNWETRPAQMDSIVPEINEPTSDVWGLKSVSE 1422

Query: 544  APVSSKTWGSVGESDKSFLENTPHKSASDWKSGCWDSRKDAPTTDEVDTFKLKHTDEGAS 723
             P + K WG+         E+ P    S   +  W S     +  E D       D+  S
Sbjct: 1423 KPWNKKNWGT---------ESAPAAWGST-DADAWGSSNKKNSETESDAAAWGSRDKRNS 1472

Query: 724  DWNSKSG---GWDLKEKKVEA-SSTWGSSKELPPPTGSQGWGSANQGNTAPDGSSNWNAA 891
            D  S +G    W+ K  + E+ ++ WGSS +      +  W   ++ N  PD        
Sbjct: 1473 DIGSGAGVLGPWNKKSSETESDAAAWGSSGKTKSDAAT--WSPWDKNNMEPDS------- 1523

Query: 892  DKSHEKSGWGSVHDAKSDLEKES---SWSAPSNKTNDG----------------DSYGWG 1014
                E +GWGS  + KS+ E ES   SW + S KT  G                +   WG
Sbjct: 1524 ----EPAGWGSQGNMKSETETESNGASWGS-SGKTKSGAAAWGSCDKNNMETNSEPSAWG 1578

Query: 1015 SSSNEKSAPRDSPG----WDAKVSGTEA---------------EASVEAQSQWGKPGAMG 1137
            S   +K+     P     WD K+S TE+               E+   A   WG+P    
Sbjct: 1579 SQGKKKAETESGPASWGAWDKKISETESGLAGWGNGDKINSETESGAAAWGSWGQPSPTA 1638

Query: 1138 SSDQWQEAANSQGWGASNSDNSGEHETQ--SPWGQTGGSTWKKKGSSTPWGSSDTSDWKX 1311
            +     E  +   W +     SGE + +  S WG      +   GS   W +   ++W+ 
Sbjct: 1639 ADKDTNED-DGNPWVSLKETKSGEKDEKEKSQWGNPA-KKFPSDGSYGGWSNGGGAEWRG 1696

Query: 1312 XXXXXXXXXXXSDGSRNTMFTVTRQRLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDG 1491
                        D     MFT T+QRLD FT+EEQ++L++VEP+M ++R+IM   GY DG
Sbjct: 1697 KRNHTPRPPRSEDNLA-PMFTATKQRLDSFTSEEQELLSDVEPVMRTLRKIMHMSGYPDG 1755

Query: 1492 DPISTEDQSYIVDKVLAYHPDKDAKVGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFS 1671
            +PIS +D++++++K+L +HP+K+ K+G  +D I V KHT F D+RC +VVS DG KQDFS
Sbjct: 1756 EPISDDDKTFVLEKILNFHPEKERKLGSAVDFITVDKHTTFTDTRCFFVVSTDGAKQDFS 1815

Query: 1672 YRKCLENLVKKKYPDHVESFFSKYWRRPRNAGDQEQ 1779
            YRK L N +  KYPD  E F  KY+++PR +G++++
Sbjct: 1816 YRKSLNNYLMTKYPDRAEEFIDKYFKKPRPSGNRDR 1851


>ref|XP_002879839.1| NRPD1b [Arabidopsis lyrata subsp. lyrata] gi|297325678|gb|EFH56098.1|
            NRPD1b [Arabidopsis lyrata subsp. lyrata]
          Length = 1947

 Score =  253 bits (645), Expect = 3e-64
 Identities = 181/611 (29%), Positives = 267/611 (43%), Gaps = 29/611 (4%)
 Frame = +1

Query: 34   DEGA---SGWNQSGGWGSKKNLPETSSAWGSSKEI---SVPESCAAWGSTVDSRAPASSE 195
            DEG    S W +S  W    N     S WG SK     + PES   W  T +       +
Sbjct: 1304 DEGKPSESNWEKSSSWD---NGCSGGSEWGVSKNTGGEANPES--NWEKTTNVE---KED 1355

Query: 196  GWGAANESGKSTQDHTTDEGASGWNQSVSKGDSDDASNWNQSVSKGDNDDASGWGSKKNK 375
             W + N    + +   +D G + W       D+D   NW    ++ D+         +N 
Sbjct: 1356 AWSSWNTKKDAQESSKSDSGVA-WGLKTKDDDADTTPNWETRPAQTDSI------VPENN 1408

Query: 376  AEASNTWGGSKLPESSEGWGSGNEIXXXXXXXXXXXXXXXTTSKTSNAWGSAKELPAPVS 555
               S+ WG      S + W   N                  T     AWGS         
Sbjct: 1409 EPTSDVWGHKS--GSDKSWDKKN----------------GGTESAPAAWGST-------D 1443

Query: 556  SKTWGSVGESDKSFLENTPHKSASDWKS---------------GCWDSRKDAPTTDEVDT 690
            +  WGS   SDK   E      A+ W S               G W+ +     +D    
Sbjct: 1444 AAVWGS---SDKKNSET--ESDAAAWGSRDKKNSEVGSGAGVLGPWNKKSSKTESDGATW 1498

Query: 691  FKLKHTDEGASDWNSKSGGWDLKEKKVEAS-STWGSSKELPPPT--GSQGWGSANQGNTA 861
                 T  GA+ W+S    WD K  + ++  + WGS  +  P T  G   WG+ +   + 
Sbjct: 1499 GSSDKTKSGAAAWSS----WDKKNMETDSEPAAWGSQSKNKPETESGPSTWGAWDTKKSE 1554

Query: 862  PD-GSSNWNAADKSHEKSGWGSVHDAKSDLEKESSWSAPSNKTNDGDSYGWG-SSSNEKS 1035
             + G + W   DK + ++  G       D +K ++ S P+      D+  WG S  N   
Sbjct: 1555 TESGPAGWGIVDKKNSETESGPAAMGNWDKKKSNTESGPA-AWGSTDAAVWGFSDKNNSE 1613

Query: 1036 APRDSPGWDAKVSGT-EAEASVEAQSQWGKPGAMGSSDQWQEAANSQGWGASNSDNSGEH 1212
               D+  W ++   T E E+   A   WG+P    +++   E  +   W +     S + 
Sbjct: 1614 TESDAAAWGSRDKKTSETESGAAAWGSWGQPTPTAANEDANED-DENPWVSLKETKSRDK 1672

Query: 1213 ETQS--PWGQTGGSTWKKKGSSTPWGSSDTSDWKXXXXXXXXXXXXSDGSRNTMFTVTRQ 1386
            + +    WG       KK  SS  W +   +DWK             D     MFT TRQ
Sbjct: 1673 DDKERIQWGNPA----KKFPSSGGWSNGGGADWKGKRNHTPRPPRSEDNLA-PMFTATRQ 1727

Query: 1387 RLDLFTAEEQDILTEVEPIMLSIRRIMQQEGYTDGDPISTEDQSYIVDKVLAYHPDKDAK 1566
            RLD FT+EEQ++L++VEP+M ++R+IM    Y DGDPIS +D++++++K+L +HP K+ K
Sbjct: 1728 RLDSFTSEEQELLSDVEPVMRTLRKIMHPSAYPDGDPISDDDKTFVLEKILNFHPQKETK 1787

Query: 1567 VGGGMDHIMVSKHTNFQDSRCMYVVSVDGQKQDFSYRKCLENLVKKKYPDHVESFFSKYW 1746
            +G G+D I V KHT F DSRC +VVS DG KQDFSYRK L N +  KYPD  E F  KY+
Sbjct: 1788 LGSGVDFITVDKHTIFSDSRCFFVVSTDGAKQDFSYRKSLNNYLMMKYPDRAEEFIDKYF 1847

Query: 1747 RRPRNAGDQEQ 1779
             +PR +G++++
Sbjct: 1848 TKPRPSGNRDR 1858